Wall clock time and date at job start Tue Mar 31 2020 05:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86800 * 120.00399 * 2 1 4 4 H 1.48497 * 109.47040 * 239.99868 * 3 2 1 5 5 H 1.48499 * 109.46810 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47308 * 119.99819 * 3 2 1 7 7 C 1.40037 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00178 * 192.28202 * 7 2 1 9 9 C 1.41543 * 119.99625 * 12.28103 * 7 2 1 10 10 C 1.41183 * 120.99315 * 201.60034 * 9 7 2 11 11 C 1.37579 * 119.02017 * 180.02562 * 10 9 7 12 12 N 1.32081 * 121.11360 * 0.02562 * 11 10 9 13 13 C 1.32482 * 122.23027 * 0.02562 * 12 11 10 14 14 N 1.39378 * 119.58394 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99950 * 6.18203 * 14 13 12 16 16 O 1.21543 * 119.99923 * 354.23310 * 15 14 13 17 17 C 1.47894 * 119.99594 * 174.51587 * 15 14 13 18 18 C 1.40002 * 120.11444 * 179.72141 * 17 15 14 19 19 C 1.38413 * 117.96692 * 179.73705 * 18 17 15 20 20 C 1.39353 * 118.03590 * 0.52449 * 19 18 17 21 21 O 1.35513 * 120.02520 * 179.75191 * 20 19 18 22 22 N 1.32673 * 119.94588 * 359.73087 * 20 19 18 23 23 N 1.28356 * 122.20183 * 359.97438 * 22 20 19 24 24 C 1.38624 * 120.83403 * 0.25078 * 13 12 11 25 25 H 0.97001 * 119.99832 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.48896 * 0.02562 * 10 9 7 27 27 H 1.08006 * 119.44697 * 180.02562 * 11 10 9 28 28 H 0.97007 * 119.99403 * 186.17726 * 14 13 12 29 29 H 1.07998 * 121.01589 * 359.97438 * 18 17 15 30 30 H 1.08001 * 120.98173 * 180.27835 * 19 18 17 31 31 H 0.96697 * 113.99888 * 269.98045 * 21 20 19 32 32 H 1.07995 * 120.60547 * 179.74531 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0953 1.6962 -1.2125 5 1 1.2765 2.7464 -0.0006 6 1 3.0952 1.6963 1.2124 7 6 2.0075 -1.2128 0.0005 8 1 3.0690 -1.2235 0.1995 9 6 1.3240 -2.4246 -0.2597 10 6 1.8541 -3.6633 0.1620 11 6 1.1559 -4.8164 -0.1130 12 7 0.0058 -4.7797 -0.7614 13 6 -0.5339 -3.6442 -1.1792 14 7 -1.7503 -3.6696 -1.8591 15 6 -2.4311 -4.8265 -1.9792 16 8 -1.9371 -5.8658 -1.5877 17 6 -3.7766 -4.8324 -2.5931 18 6 -4.4836 -6.0336 -2.7244 19 6 -5.7413 -5.9869 -3.3003 20 6 -6.2221 -4.7495 -3.7241 21 8 -7.4463 -4.6581 -4.2980 22 7 -5.4806 -3.6610 -3.5649 23 7 -4.3162 -3.6994 -3.0261 24 6 0.0988 -2.4316 -0.9536 25 1 -0.4850 0.8401 -0.0004 26 1 2.7939 -3.7051 0.6925 27 1 1.5549 -5.7678 0.2067 28 1 -2.1069 -2.8545 -2.2457 29 1 -4.0620 -6.9676 -2.3832 30 1 -6.3310 -6.8836 -3.4214 31 1 -7.4389 -4.7626 -5.2593 32 1 -0.3424 -1.5085 -1.2993 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323958183.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:37 Heat of formation + Delta-G solvation = 4.080493 kcal Electronic energy + Delta-G solvation = -20909.772188 eV Core-core repulsion = 17449.761352 eV Total energy + Delta-G solvation = -3460.010836 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.47853 -41.14334 -39.60261 -38.58448 -36.24522 -35.61870 -34.35637 -32.91380 -32.39468 -30.35850 -27.94374 -26.63886 -25.64218 -23.89060 -23.55979 -21.82740 -20.25647 -19.60980 -19.53239 -18.70965 -17.50503 -17.27755 -17.05677 -16.47835 -16.20921 -16.02571 -15.59838 -15.34421 -15.08913 -14.77687 -14.43127 -14.34819 -14.13460 -13.42314 -13.16413 -13.01427 -12.86007 -12.67820 -12.10153 -11.93429 -11.60641 -11.48900 -11.36861 -11.19952 -10.94314 -10.71326 -9.96328 -9.70652 -8.90901 -8.60668 -6.58767 -0.83085 -0.41900 0.72357 1.00455 1.41753 1.50769 1.54193 1.65496 1.81612 2.20047 2.20268 2.42894 2.80449 2.82073 3.36843 3.57102 3.69823 3.74599 3.87686 4.15112 4.46180 4.69715 4.76245 4.81036 4.89787 4.91863 5.07266 5.24738 5.47058 5.57908 5.90054 6.06815 6.36676 6.44572 6.52479 6.77029 6.83002 7.01402 7.31383 7.76454 8.25981 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.022144 B = 0.003915 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.136723 B = 7151.027387 C = 8355.683811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.035 3.965 3 Si 0.991 3.009 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.478 4.478 8 H 0.087 0.913 9 C 0.110 3.890 10 C -0.296 4.296 11 C 0.115 3.885 12 N -0.577 5.577 13 C 0.327 3.673 14 N -0.635 5.635 15 C 0.562 3.438 16 O -0.498 6.498 17 C 0.006 3.994 18 C -0.047 4.047 19 C -0.111 4.111 20 C 0.278 3.722 21 O -0.473 6.473 22 N -0.288 5.288 23 N -0.205 5.205 24 C -0.260 4.260 25 H 0.292 0.708 26 H 0.119 0.881 27 H 0.156 0.844 28 H 0.425 0.575 29 H 0.183 0.817 30 H 0.211 0.789 31 H 0.433 0.567 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.531 -6.700 -8.484 15.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.181 4.181 3 Si 0.811 3.189 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.182 1.182 7 C -0.508 4.508 8 H 0.105 0.895 9 C 0.102 3.898 10 C -0.319 4.319 11 C -0.039 4.039 12 N -0.298 5.298 13 C 0.103 3.897 14 N -0.281 5.281 15 C 0.345 3.655 16 O -0.368 6.368 17 C -0.142 4.142 18 C -0.075 4.075 19 C -0.141 4.141 20 C 0.093 3.907 21 O -0.283 6.283 22 N -0.141 5.141 23 N -0.054 5.054 24 C -0.285 4.285 25 H 0.103 0.897 26 H 0.137 0.863 27 H 0.173 0.827 28 H 0.264 0.736 29 H 0.200 0.800 30 H 0.228 0.772 31 H 0.297 0.703 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.046 -6.461 -8.071 15.875 hybrid contribution 0.577 0.498 -0.115 0.771 sum -11.469 -5.963 -8.186 15.301 Atomic orbital electron populations 1.69774 1.09097 1.30987 1.34001 1.26896 0.95621 1.04820 0.90811 0.85108 0.78626 0.74970 0.80183 1.18282 1.19171 1.18243 1.19919 0.96947 0.91063 1.42904 0.89461 1.18021 0.91073 0.93558 0.87128 1.22097 1.04480 0.93666 1.11686 1.22248 0.89778 0.97925 0.93914 1.67301 1.14754 1.27449 1.20249 1.18380 0.86675 0.90714 0.93980 1.43248 1.19090 1.12392 1.53359 1.18018 0.84064 0.83918 0.79465 1.90857 1.67916 1.31412 1.46652 1.22735 0.96417 0.93697 1.01302 1.22640 0.93367 0.99135 0.92405 1.22953 0.94722 1.00052 0.96368 1.21228 0.86176 0.89862 0.93412 1.84704 1.19949 1.94618 1.29016 1.72987 0.99926 1.28470 1.12764 1.73242 1.03640 1.23996 1.04568 1.21788 1.01250 0.95889 1.09614 0.89678 0.86273 0.82702 0.73644 0.79969 0.77161 0.70257 0.85074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.76 10.56 21.84 0.23 -40.53 16 2 C 0.04 1.71 5.30 85.29 0.45 2.16 16 3 Si 0.99 36.30 29.58 68.60 2.03 38.33 16 4 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 5 H -0.27 -9.30 7.11 99.48 0.71 -8.60 16 6 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 7 C -0.48 -24.80 9.15 23.52 0.22 -24.59 16 8 H 0.09 4.27 7.88 -2.91 -0.02 4.25 16 9 C 0.11 5.95 5.64 -21.11 -0.12 5.83 16 10 C -0.30 -14.56 9.90 22.84 0.23 -14.33 16 11 C 0.11 5.48 11.15 84.50 0.94 6.42 16 12 N -0.58 -29.68 7.85 -193.58 -1.52 -31.20 16 13 C 0.33 16.57 7.41 132.79 0.98 17.55 16 14 N -0.63 -27.26 5.37 -311.24 -1.67 -28.93 16 15 C 0.56 22.20 7.76 86.80 0.67 22.88 16 16 O -0.50 -22.18 14.64 -3.85 -0.06 -22.24 16 17 C 0.01 0.19 6.83 41.99 0.29 0.47 16 18 C -0.05 -0.99 9.72 22.74 0.22 -0.77 16 19 C -0.11 -1.58 10.14 22.58 0.23 -1.35 16 20 C 0.28 5.22 7.85 84.83 0.67 5.89 16 21 O -0.47 -6.03 13.56 -88.15 -1.20 -7.23 16 22 N -0.29 -7.89 11.54 -170.02 -1.96 -9.85 16 23 N -0.21 -6.43 10.74 -48.52 -0.52 -6.95 16 24 C -0.26 -13.80 8.65 22.99 0.20 -13.61 16 25 H 0.29 13.22 8.29 -92.71 -0.77 12.45 16 26 H 0.12 5.29 8.06 -2.91 -0.02 5.27 16 27 H 0.16 6.20 8.06 -2.91 -0.02 6.18 16 28 H 0.43 16.65 8.06 -92.70 -0.75 15.90 16 29 H 0.18 3.29 7.71 -2.91 -0.02 3.27 16 30 H 0.21 0.92 8.06 -2.91 -0.02 0.90 16 31 H 0.43 0.63 9.06 -74.06 -0.67 -0.04 16 32 H 0.13 7.05 5.87 -2.91 -0.02 7.03 16 Total: -1.00 -72.56 295.71 0.11 -72.45 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: -0.20 Total: 29.60 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: 4.98 Total: 6.55 kcal Atomic # 7 Polarization: -112.02 SS G_CDS: -5.44 Total: -117.46 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -1.25 Total: -29.47 kcal Atomic # 14 Polarization: 36.30 SS G_CDS: 2.03 Total: 38.33 kcal Total: -72.56 0.11 -72.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323958183.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.529 kcal (2) G-P(sol) polarization free energy of solvation -72.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds