Wall clock time and date at job start Tue Mar 31 2020 05:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 120.00377 * 2 1 4 4 H 1.48499 * 109.47104 * 240.00312 * 3 2 1 5 5 H 1.48507 * 109.46948 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47647 * 119.99811 * 3 2 1 7 7 C 1.38803 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99772 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00248 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00303 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47181 * 179.97438 * 10 9 7 12 12 C 1.53008 * 109.47222 * 179.97438 * 11 10 9 13 13 O 1.45198 * 109.47231 * 180.02562 * 12 11 10 14 14 C 1.34221 * 116.99903 * 180.02562 * 13 12 11 15 15 O 1.20826 * 120.00367 * 359.97438 * 14 13 12 16 16 C 1.50706 * 120.00092 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47238 * 180.02562 * 16 14 13 18 18 N 1.46496 * 109.47294 * 179.97438 * 17 16 14 19 19 C 1.34598 * 126.44096 * 124.99297 * 18 17 16 20 20 N 1.31070 * 106.67860 * 180.02562 * 19 18 17 21 21 N 1.28842 * 107.99645 * 0.02562 * 20 19 18 22 22 N 1.28744 * 109.39215 * 359.73360 * 21 20 19 23 23 H 0.97003 * 120.00004 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47258 * 59.99866 * 10 9 7 25 25 H 1.08994 * 109.47323 * 300.00239 * 10 9 7 26 26 H 1.09003 * 109.46913 * 59.99926 * 11 10 9 27 27 H 1.08993 * 109.47389 * 299.99900 * 11 10 9 28 28 H 1.08995 * 109.46885 * 60.00179 * 12 11 10 29 29 H 1.09006 * 109.46726 * 300.00547 * 12 11 10 30 30 H 1.09001 * 109.46953 * 299.99668 * 16 14 13 31 31 H 1.09000 * 109.47318 * 59.99266 * 16 14 13 32 32 H 1.09001 * 109.46832 * 299.99686 * 17 16 14 33 33 H 1.09004 * 109.47261 * 59.99705 * 17 16 14 34 34 H 1.07999 * 126.66161 * 0.04829 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9792 -5.3243 0.0001 12 6 3.1513 -6.3078 -0.0005 13 8 2.6421 -7.6676 -0.0005 14 6 3.5483 -8.6576 -0.0005 15 8 4.7281 -8.3968 -0.0010 16 6 3.0945 -10.0947 -0.0011 17 6 4.3163 -11.0155 -0.0004 18 7 3.8751 -12.4124 -0.0003 19 6 4.2269 -13.3620 -0.8870 20 7 3.6125 -14.4615 -0.5244 21 7 2.9190 -14.2008 0.5298 22 7 3.0796 -12.9648 0.8522 23 1 -0.4850 0.8401 0.0004 24 1 3.1244 -3.7315 0.8894 25 1 3.1244 -3.7315 -0.8904 26 1 1.3703 -5.4846 -0.8897 27 1 1.3709 -5.4841 0.8903 28 1 3.7605 -6.1476 0.8890 29 1 3.7593 -6.1478 -0.8910 30 1 2.4948 -10.2867 0.8887 31 1 2.4952 -10.2862 -0.8913 32 1 4.9164 -10.8237 -0.8899 33 1 4.9151 -10.8239 0.8901 34 1 4.8875 -13.2415 -1.7328 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335180181.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:50 Heat of formation + Delta-G solvation = 17.864556 kcal Electronic energy + Delta-G solvation = -18598.628051 eV Core-core repulsion = 15274.658889 eV Total energy + Delta-G solvation = -3323.969163 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.64207 -40.87533 -37.43917 -36.42113 -33.70326 -33.00975 -32.50036 -32.16033 -27.47017 -26.08413 -25.41338 -24.30324 -23.15274 -21.50079 -21.13391 -18.78969 -17.69124 -17.63078 -17.36035 -17.11959 -16.56992 -16.19811 -15.57396 -14.86998 -14.54364 -14.51123 -13.91014 -13.46411 -13.39119 -12.92927 -12.81383 -12.60572 -12.24619 -12.18430 -11.63669 -11.47326 -11.42202 -11.28129 -11.07098 -11.06700 -10.88968 -10.81816 -10.71561 -10.45544 -9.71553 -9.12260 -8.43187 -6.63155 -6.29939 -4.01816 0.74299 1.31167 1.74072 1.80660 2.33195 3.16417 3.18817 3.23676 3.44843 3.52680 3.75342 3.80578 4.14607 4.20554 4.28103 4.49307 4.69604 4.90260 4.95565 4.97324 5.01600 5.06526 5.20528 5.29190 5.33943 5.59353 5.65136 5.75305 6.01124 6.21947 6.33657 6.55452 7.31167 7.53287 8.13273 8.28982 9.16250 10.78101 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.068785 B = 0.002002 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.969194 B =13985.706805 C =14262.562046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.073 0.927 9 S -0.122 6.122 10 C -0.115 4.115 11 C -0.099 4.099 12 C 0.073 3.927 13 O -0.349 6.349 14 C 0.471 3.529 15 O -0.510 6.510 16 C -0.132 4.132 17 C 0.128 3.872 18 N -0.311 5.311 19 C 0.165 3.835 20 N -0.308 5.308 21 N -0.073 5.073 22 N -0.090 5.090 23 H 0.269 0.731 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.127 0.873 31 H 0.118 0.882 32 H 0.127 0.873 33 H 0.119 0.881 34 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.339 -21.638 -2.447 23.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.669 4.669 8 H 0.091 0.909 9 S 0.106 5.894 10 C -0.264 4.264 11 C -0.137 4.137 12 C -0.002 4.002 13 O -0.265 6.265 14 C 0.313 3.687 15 O -0.399 6.399 16 C -0.171 4.171 17 C 0.006 3.994 18 N -0.113 5.113 19 C -0.134 4.134 20 N -0.156 5.156 21 N -0.067 5.067 22 N -0.077 5.077 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.145 0.855 31 H 0.136 0.864 32 H 0.145 0.855 33 H 0.137 0.863 34 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 7.539 -22.352 -1.623 23.645 hybrid contribution 2.644 2.129 -0.598 3.447 sum 10.183 -20.223 -2.221 22.750 Atomic orbital electron populations 1.70002 1.05934 1.27600 1.46871 1.25022 0.95108 0.99149 0.94460 0.86198 0.79230 0.81074 0.78884 1.19902 1.20759 1.19891 1.22648 0.94542 0.90654 1.59014 0.90874 1.84677 1.08619 0.99232 1.96899 1.23178 1.03559 0.96271 1.03360 1.21305 0.96376 0.91581 1.04473 1.23377 0.97973 0.75966 1.02847 1.86474 1.39949 1.17198 1.82905 1.22928 0.84660 0.88306 0.72785 1.90718 1.18369 1.85180 1.45665 1.21533 0.99055 0.88097 1.08407 1.22011 0.96616 0.72608 1.08142 1.48746 1.31243 1.12734 1.18569 1.27828 1.02531 0.84311 0.98733 1.75044 1.09128 1.22804 1.08578 1.78697 1.16009 1.04656 1.07381 1.78926 1.09253 1.04940 1.14563 0.92134 0.91698 0.91712 0.90267 0.90215 0.90834 0.90871 0.85523 0.86410 0.85522 0.86307 0.74717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.40 13.22 55.49 0.73 -24.66 16 2 C 0.07 2.00 5.49 -17.43 -0.10 1.90 16 3 Si 0.92 21.03 29.55 -169.99 -5.02 16.01 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.52 -14.50 9.50 30.94 0.29 -14.21 16 8 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 9 S -0.12 -3.08 21.44 -107.50 -2.30 -5.38 16 10 C -0.12 -2.16 5.67 37.15 0.21 -1.95 16 11 C -0.10 -1.47 5.60 -26.73 -0.15 -1.62 16 12 C 0.07 0.90 5.47 37.16 0.20 1.10 16 13 O -0.35 -3.86 10.22 -39.23 -0.40 -4.26 16 14 C 0.47 4.14 7.96 36.01 0.29 4.43 16 15 O -0.51 -5.58 15.73 -18.75 -0.29 -5.88 16 16 C -0.13 -0.66 5.96 -27.88 -0.17 -0.82 16 17 C 0.13 0.46 5.77 -4.05 -0.02 0.44 16 18 N -0.31 -1.85 3.44 -62.56 -0.22 -2.06 16 19 C 0.16 0.86 12.79 -90.39 -1.16 -0.30 16 20 N -0.31 -2.95 12.36 29.59 0.37 -2.58 16 21 N -0.07 -0.83 13.43 60.35 0.81 -0.02 16 22 N -0.09 -0.86 13.08 60.35 0.79 -0.07 16 23 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.06 1.20 8.14 -51.91 -0.42 0.77 16 25 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 26 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 29 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 30 H 0.13 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.12 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.13 0.16 8.04 -51.93 -0.42 -0.26 16 33 H 0.12 0.43 8.10 -51.93 -0.42 0.01 16 34 H 0.24 -0.04 8.06 -52.49 -0.42 -0.46 16 LS Contribution 323.41 15.07 4.87 4.87 Total: -1.00 -34.92 323.41 -5.45 -40.37 By element: Atomic # 1 Polarization: -1.14 SS G_CDS: -4.19 Total: -5.32 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -0.60 Total: -11.02 kcal Atomic # 7 Polarization: -31.88 SS G_CDS: 2.48 Total: -29.40 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -0.70 Total: -10.13 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -3.08 SS G_CDS: -2.30 Total: -5.38 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.92 -5.45 -40.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335180181.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.231 kcal (2) G-P(sol) polarization free energy of solvation -34.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds