Wall clock time and date at job start Tue Mar 31 2020 05:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 120.00377 * 2 1 4 4 H 1.48499 * 109.47104 * 240.00312 * 3 2 1 5 5 H 1.48507 * 109.46948 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47647 * 119.99811 * 3 2 1 7 7 C 1.38803 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99772 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00248 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00303 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47181 * 179.97438 * 10 9 7 12 12 C 1.53008 * 109.47222 * 179.97438 * 11 10 9 13 13 O 1.45198 * 109.47231 * 180.02562 * 12 11 10 14 14 C 1.34221 * 116.99903 * 180.02562 * 13 12 11 15 15 O 1.20826 * 120.00367 * 359.97438 * 14 13 12 16 16 C 1.50706 * 120.00092 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47238 * 180.02562 * 16 14 13 18 18 N 1.46496 * 109.47294 * 179.97438 * 17 16 14 19 19 C 1.34598 * 126.44096 * 124.99297 * 18 17 16 20 20 N 1.31070 * 106.67860 * 180.02562 * 19 18 17 21 21 N 1.28842 * 107.99645 * 0.02562 * 20 19 18 22 22 N 1.28744 * 109.39215 * 359.73360 * 21 20 19 23 23 H 0.97003 * 120.00004 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47258 * 59.99866 * 10 9 7 25 25 H 1.08994 * 109.47323 * 300.00239 * 10 9 7 26 26 H 1.09003 * 109.46913 * 59.99926 * 11 10 9 27 27 H 1.08993 * 109.47389 * 299.99900 * 11 10 9 28 28 H 1.08995 * 109.46885 * 60.00179 * 12 11 10 29 29 H 1.09006 * 109.46726 * 300.00547 * 12 11 10 30 30 H 1.09001 * 109.46953 * 299.99668 * 16 14 13 31 31 H 1.09000 * 109.47318 * 59.99266 * 16 14 13 32 32 H 1.09001 * 109.46832 * 299.99686 * 17 16 14 33 33 H 1.09004 * 109.47261 * 59.99705 * 17 16 14 34 34 H 1.07999 * 126.66161 * 0.04829 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9792 -5.3243 0.0001 12 6 3.1513 -6.3078 -0.0005 13 8 2.6421 -7.6676 -0.0005 14 6 3.5483 -8.6576 -0.0005 15 8 4.7281 -8.3968 -0.0010 16 6 3.0945 -10.0947 -0.0011 17 6 4.3163 -11.0155 -0.0004 18 7 3.8751 -12.4124 -0.0003 19 6 4.2269 -13.3620 -0.8870 20 7 3.6125 -14.4615 -0.5244 21 7 2.9190 -14.2008 0.5298 22 7 3.0796 -12.9648 0.8522 23 1 -0.4850 0.8401 0.0004 24 1 3.1244 -3.7315 0.8894 25 1 3.1244 -3.7315 -0.8904 26 1 1.3703 -5.4846 -0.8897 27 1 1.3709 -5.4841 0.8903 28 1 3.7605 -6.1476 0.8890 29 1 3.7593 -6.1478 -0.8910 30 1 2.4948 -10.2867 0.8887 31 1 2.4952 -10.2862 -0.8913 32 1 4.9164 -10.8237 -0.8899 33 1 4.9151 -10.8239 0.8901 34 1 4.8875 -13.2415 -1.7328 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335180181.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:49 Heat of formation + Delta-G solvation = -4.434652 kcal Electronic energy + Delta-G solvation = -18599.595018 eV Core-core repulsion = 15274.658889 eV Total energy + Delta-G solvation = -3324.936129 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.18917 -41.64592 -38.20049 -37.01052 -34.93073 -34.58614 -33.57422 -32.69465 -28.46053 -27.69395 -26.64320 -24.83360 -23.75352 -22.73624 -21.80132 -19.61722 -19.27188 -18.30486 -18.09205 -17.86584 -17.28204 -16.89865 -16.72031 -16.37220 -16.09485 -15.35496 -14.97003 -14.49736 -14.18847 -13.95042 -13.84810 -13.65868 -13.22537 -13.11810 -12.93487 -12.64810 -12.62504 -12.39938 -12.39573 -12.21356 -11.93041 -11.77743 -11.51731 -11.46185 -11.36091 -11.14191 -10.36143 -8.68656 -8.38297 -6.15014 0.24900 0.86741 1.04775 1.22932 1.29761 1.41099 1.46191 1.55181 1.87901 2.27199 2.96344 3.15544 3.27302 3.42168 3.50435 3.62235 3.81649 3.86323 3.97127 4.15254 4.18673 4.30394 4.34411 4.43673 4.53445 4.59728 4.68544 4.76524 5.01921 5.12456 5.22599 5.39226 5.42128 6.17070 6.56434 7.04167 7.55599 8.70647 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.068785 B = 0.002002 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.969194 B =13985.706805 C =14262.562046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.015 3.985 3 Si 0.994 3.006 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.075 0.925 9 S -0.189 6.189 10 C -0.091 4.091 11 C -0.089 4.089 12 C 0.082 3.918 13 O -0.358 6.358 14 C 0.475 3.525 15 O -0.530 6.530 16 C -0.123 4.123 17 C 0.128 3.872 18 N -0.305 5.305 19 C 0.187 3.813 20 N -0.346 5.346 21 N -0.112 5.112 22 N -0.111 5.111 23 H 0.272 0.728 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.126 0.874 31 H 0.135 0.865 32 H 0.159 0.841 33 H 0.120 0.880 34 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.316 -21.821 -3.308 24.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.190 4.190 3 Si 0.815 3.185 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.688 4.688 8 H 0.094 0.906 9 S 0.040 5.960 10 C -0.240 4.240 11 C -0.127 4.127 12 C 0.007 3.993 13 O -0.275 6.275 14 C 0.319 3.681 15 O -0.420 6.420 16 C -0.161 4.161 17 C 0.008 3.992 18 N -0.107 5.107 19 C -0.111 4.111 20 N -0.194 5.194 21 N -0.106 5.106 22 N -0.098 5.098 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.144 0.856 31 H 0.153 0.847 32 H 0.177 0.823 33 H 0.138 0.862 34 H 0.304 0.696 Dipole moment (debyes) X Y Z Total from point charges 9.518 -22.551 -2.480 24.603 hybrid contribution 2.086 2.111 -0.360 2.990 sum 11.605 -20.440 -2.840 23.676 Atomic orbital electron populations 1.70139 1.07667 1.28667 1.47813 1.26067 0.96037 1.03135 0.93750 0.85069 0.77926 0.76091 0.79364 1.18881 1.20103 1.18948 1.23028 0.94863 0.91907 1.59049 0.90650 1.84669 1.13327 1.00968 1.97076 1.23067 1.00686 0.96509 1.03760 1.21121 0.97294 0.89953 1.04381 1.23053 0.96366 0.76504 1.03381 1.86460 1.40750 1.16907 1.83345 1.23521 0.84082 0.88901 0.71633 1.90716 1.19135 1.85500 1.46615 1.21543 0.99844 0.85545 1.09191 1.22237 0.96038 0.71029 1.09920 1.48868 1.30436 1.13433 1.17968 1.28746 1.01045 0.82691 0.98635 1.74958 1.10455 1.25111 1.08904 1.78673 1.17583 1.05627 1.08711 1.78847 1.10439 1.04740 1.15775 0.91932 0.91296 0.91134 0.90292 0.90482 0.90520 0.90176 0.85587 0.84725 0.82280 0.86163 0.69591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.70 13.22 21.65 0.29 -53.41 16 2 C 0.02 0.85 5.49 84.86 0.47 1.32 16 3 Si 0.99 42.84 29.55 68.60 2.03 44.87 16 4 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 5 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 7 C -0.54 -30.31 9.50 67.96 0.65 -29.66 16 8 H 0.08 4.03 7.80 -2.91 -0.02 4.01 16 9 S -0.19 -9.66 21.44 -56.49 -1.21 -10.87 16 10 C -0.09 -3.36 5.67 71.98 0.41 -2.95 16 11 C -0.09 -2.55 5.60 30.60 0.17 -2.37 16 12 C 0.08 1.87 5.47 71.98 0.39 2.26 16 13 O -0.36 -7.20 10.22 -51.33 -0.52 -7.73 16 14 C 0.48 7.22 7.96 71.24 0.57 7.78 16 15 O -0.53 -10.26 15.73 21.96 0.35 -9.91 16 16 C -0.12 -0.90 5.96 29.85 0.18 -0.72 16 17 C 0.13 0.53 5.77 86.38 0.50 1.03 16 18 N -0.30 -2.89 3.44 -351.83 -1.21 -4.10 16 19 C 0.19 1.41 12.79 180.27 2.31 3.72 16 20 N -0.35 -6.28 12.36 -60.30 -0.74 -7.02 16 21 N -0.11 -2.53 13.43 37.01 0.50 -2.03 16 22 N -0.11 -2.02 13.08 37.02 0.48 -1.53 16 23 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 24 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.07 2.51 8.14 -2.40 -0.02 2.49 16 26 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.08 1.71 8.13 -2.39 -0.02 1.69 16 29 H 0.08 1.73 8.13 -2.38 -0.02 1.71 16 30 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.16 -0.32 8.04 -2.39 -0.02 -0.34 16 33 H 0.12 0.55 8.10 -2.38 -0.02 0.53 16 34 H 0.29 -1.48 8.06 -2.91 -0.02 -1.50 16 Total: -1.00 -77.93 323.41 6.69 -71.23 By element: Atomic # 1 Polarization: -1.00 SS G_CDS: 1.11 Total: 0.11 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: 5.63 Total: -19.61 kcal Atomic # 7 Polarization: -67.41 SS G_CDS: -0.69 Total: -68.10 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.18 Total: -17.64 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: -9.66 SS G_CDS: -1.21 Total: -10.87 kcal Total: -77.93 6.69 -71.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335180181.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.800 kcal (2) G-P(sol) polarization free energy of solvation -77.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds