Wall clock time and date at job start Tue Mar 31 2020 05:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47128 * 2 1 4 4 C 1.50703 * 109.46526 * 240.00179 * 2 1 3 5 5 H 1.07999 * 120.00258 * 274.99312 * 4 2 1 6 6 C 1.37877 * 119.99716 * 95.00148 * 4 2 1 7 7 N 1.31513 * 120.00200 * 184.91109 * 6 4 2 8 8 Si 1.86800 * 120.00246 * 4.91106 * 6 4 2 9 9 H 1.48499 * 109.47327 * 84.83326 * 8 6 4 10 10 H 1.48497 * 109.47284 * 204.83381 * 8 6 4 11 11 H 1.48497 * 109.46968 * 324.83553 * 8 6 4 12 12 O 1.45200 * 109.47325 * 120.00720 * 2 1 3 13 13 C 1.34228 * 116.99847 * 269.99708 * 12 2 1 14 14 O 1.20832 * 119.99975 * 359.97438 * 13 12 2 15 15 C 1.50695 * 120.00217 * 179.97438 * 13 12 2 16 16 O 1.42903 * 109.47432 * 179.97438 * 15 13 12 17 17 C 1.35942 * 116.99815 * 179.97438 * 16 15 13 18 18 C 1.38724 * 120.01467 * 179.97438 * 17 16 15 19 19 C 1.38167 * 120.01508 * 179.97438 * 18 17 16 20 20 C 1.38416 * 120.05205 * 0.02854 * 19 18 17 21 21 F 1.35095 * 119.97863 * 179.97438 * 20 19 18 22 22 C 1.38648 * 120.03779 * 359.97438 * 20 19 18 23 23 F 1.35108 * 120.00711 * 180.02562 * 22 20 19 24 24 C 1.38365 * 119.98705 * 359.72942 * 22 20 19 25 25 H 1.09001 * 109.46963 * 175.03114 * 1 2 3 26 26 H 1.08996 * 109.46481 * 295.02988 * 1 2 3 27 27 H 1.09000 * 109.47193 * 55.02857 * 1 2 3 28 28 H 0.97005 * 120.00731 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.47339 * 59.99830 * 15 13 12 30 30 H 1.09003 * 109.47101 * 299.99742 * 15 13 12 31 31 H 1.07999 * 119.99632 * 359.97438 * 18 17 16 32 32 H 1.07996 * 119.97686 * 180.02562 * 19 18 17 33 33 H 1.07998 * 120.02842 * 180.29265 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.1354 -1.7855 -1.2292 6 6 2.3601 0.0122 -2.3581 7 7 2.7057 -0.6130 -3.4623 8 14 2.3134 1.8791 -2.3174 9 1 3.5989 2.3950 -1.7822 10 1 2.1055 2.3992 -3.6927 11 1 1.1985 2.3275 -1.4449 12 8 2.0141 -0.6846 1.1855 13 6 2.2173 0.0638 2.2811 14 8 1.9984 1.2517 2.2504 15 6 2.7184 -0.5775 3.5493 16 8 2.8542 0.4183 4.5652 17 6 3.2989 0.0031 5.7809 18 6 3.4543 0.9175 6.8124 19 6 3.9058 0.4954 8.0481 20 6 4.2040 -0.8398 8.2581 21 9 4.6458 -1.2509 9.4668 22 6 4.0495 -1.7557 7.2287 23 9 4.3402 -3.0590 7.4345 24 6 3.5916 -1.3357 5.9924 25 1 -0.3633 -1.0238 -0.0890 26 1 -0.3632 0.4348 0.9312 27 1 -0.3633 0.5890 -0.8421 28 1 2.9361 -0.1047 -4.2558 29 1 3.6873 -1.0412 3.3638 30 1 2.0088 -1.3372 3.8773 31 1 3.2224 1.9597 6.6496 32 1 4.0262 1.2078 8.8508 33 1 3.4666 -2.0493 5.1914 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347051639.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:07 Heat of formation + Delta-G solvation = -185.745114 kcal Electronic energy + Delta-G solvation = -21538.274732 eV Core-core repulsion = 17587.050503 eV Total energy + Delta-G solvation = -3951.224230 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.73215 -48.79831 -40.67350 -39.59404 -37.50789 -35.89134 -33.21630 -31.37544 -30.96667 -30.21019 -28.36881 -25.50724 -23.83894 -22.95290 -21.80251 -19.91601 -19.08666 -18.02203 -17.81825 -17.25823 -16.88197 -16.79881 -16.42035 -16.25233 -15.83885 -15.21784 -14.90898 -14.80461 -14.49039 -14.45601 -13.82460 -13.46478 -12.97078 -12.85571 -12.53625 -12.51673 -12.23022 -11.81333 -11.65463 -11.21944 -11.14100 -11.08398 -10.80646 -10.14773 -9.86948 -9.62895 -9.51594 -9.25948 -8.81836 -8.56111 -6.37282 -4.42333 0.54146 0.63899 2.24963 2.60549 2.97604 3.15303 3.23247 3.28254 3.44019 3.65000 3.92600 4.17857 4.18472 4.44540 4.55399 4.79490 4.89881 4.93298 5.04911 5.27372 5.35899 5.43758 5.61532 5.68577 6.05133 6.19291 6.31524 6.38678 6.55988 6.84380 7.03971 7.19808 7.38165 8.08756 8.43933 8.72020 9.20750 10.73590 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.034328 B = 0.003127 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.459665 B = 8951.180852 C = 9292.785678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.183 3.817 3 H 0.049 0.951 4 C -0.521 4.521 5 H 0.087 0.913 6 C 0.084 3.916 7 N -0.878 5.878 8 Si 0.870 3.130 9 H -0.269 1.269 10 H -0.280 1.280 11 H -0.260 1.260 12 O -0.343 6.343 13 C 0.454 3.546 14 O -0.503 6.503 15 C 0.059 3.941 16 O -0.282 6.282 17 C 0.159 3.841 18 C -0.130 4.130 19 C -0.083 4.083 20 C 0.024 3.976 21 F -0.131 7.131 22 C 0.112 3.888 23 F -0.124 7.124 24 C -0.224 4.224 25 H 0.059 0.941 26 H 0.031 0.969 27 H 0.064 0.936 28 H 0.272 0.728 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.152 0.848 32 H 0.154 0.846 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.587 0.588 21.132 21.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.131 3.869 3 H 0.067 0.933 4 C -0.558 4.558 5 H 0.105 0.895 6 C -0.122 4.122 7 N -0.514 5.514 8 Si 0.695 3.305 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.184 1.184 12 O -0.259 6.259 13 C 0.295 3.705 14 O -0.392 6.392 15 C -0.017 4.017 16 O -0.194 6.194 17 C 0.112 3.888 18 C -0.148 4.148 19 C -0.102 4.102 20 C 0.004 3.996 21 F -0.110 7.110 22 C 0.092 3.908 23 F -0.103 7.103 24 C -0.243 4.243 25 H 0.078 0.922 26 H 0.050 0.950 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.170 0.830 32 H 0.172 0.828 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.529 1.079 20.819 20.903 hybrid contribution 0.200 0.434 0.031 0.478 sum 1.729 1.512 20.850 20.977 Atomic orbital electron populations 1.22247 0.97213 1.01795 0.99878 1.21111 0.91639 0.94245 0.79933 0.93298 1.20788 1.45779 0.96382 0.92839 0.89501 1.24920 0.93348 0.98746 0.95155 1.69844 1.43424 1.36404 1.01717 0.86955 0.80033 0.85559 0.77923 1.19453 1.20564 1.18432 1.86666 1.75683 1.43396 1.20197 1.22627 0.75871 0.86218 0.85790 1.90648 1.47579 1.16552 1.84378 1.22175 1.04043 0.90292 0.85165 1.86184 1.80048 1.35598 1.17558 1.18761 0.92943 0.91417 0.85633 1.20405 1.03485 1.00725 0.90225 1.20879 0.97999 0.93299 0.98034 1.17543 1.07529 0.93142 0.81434 1.91519 1.87375 1.90869 1.41249 1.17325 1.01451 0.78432 0.93602 1.91554 1.90825 1.32556 1.95336 1.21212 1.08536 0.96673 0.97882 0.92226 0.95035 0.91749 0.91797 0.87430 0.87588 0.83019 0.82830 0.82681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 9.53 37.16 0.35 -2.91 16 2 C 0.18 4.41 2.22 -27.88 -0.06 4.35 16 3 H 0.05 1.24 4.31 -51.93 -0.22 1.01 16 4 C -0.52 -14.27 9.25 -34.44 -0.32 -14.59 16 5 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 6 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 7 N -0.88 -25.43 13.96 55.43 0.77 -24.66 16 8 Si 0.87 20.82 26.99 -169.99 -4.59 16.24 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.26 -6.06 6.82 56.52 0.39 -5.68 16 12 O -0.34 -7.35 9.86 -39.25 -0.39 -7.74 16 13 C 0.45 8.51 8.01 36.00 0.29 8.80 16 14 O -0.50 -11.00 15.72 -25.48 -0.40 -11.40 16 15 C 0.06 0.76 5.33 36.00 0.19 0.95 16 16 O -0.28 -3.74 9.67 -39.51 -0.38 -4.12 16 17 C 0.16 1.70 6.68 -39.25 -0.26 1.43 16 18 C -0.13 -1.14 9.98 -39.43 -0.39 -1.54 16 19 C -0.08 -0.65 10.02 -39.54 -0.40 -1.05 16 20 C 0.02 0.23 7.30 -39.36 -0.29 -0.05 16 21 F -0.13 -1.41 17.18 2.25 0.04 -1.38 16 22 C 0.11 1.17 7.30 -39.38 -0.29 0.89 16 23 F -0.12 -1.42 17.18 2.25 0.04 -1.38 16 24 C -0.22 -2.19 9.01 -39.38 -0.35 -2.54 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.11 1.13 7.68 -51.93 -0.40 0.73 16 30 H 0.11 1.04 7.65 -51.93 -0.40 0.64 16 31 H 0.15 1.13 8.06 -52.49 -0.42 0.70 16 32 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.16 1.27 6.30 -52.49 -0.33 0.94 16 LS Contribution 304.53 15.07 4.59 4.59 Total: -1.00 -31.36 304.53 -4.98 -36.34 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: -3.04 Total: -2.44 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -1.63 Total: -4.06 kcal Atomic # 7 Polarization: -25.43 SS G_CDS: 0.77 Total: -24.66 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -1.17 Total: -23.26 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.08 Total: -2.76 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.59 Total: 16.24 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.36 -4.98 -36.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347051639.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.400 kcal (2) G-P(sol) polarization free energy of solvation -31.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds