Wall clock time and date at job start Tue Mar 31 2020 05:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47128 * 2 1 4 4 C 1.50703 * 109.46526 * 240.00179 * 2 1 3 5 5 H 1.07999 * 120.00258 * 274.99312 * 4 2 1 6 6 C 1.37877 * 119.99716 * 95.00148 * 4 2 1 7 7 N 1.31513 * 120.00200 * 184.91109 * 6 4 2 8 8 Si 1.86800 * 120.00246 * 4.91106 * 6 4 2 9 9 H 1.48499 * 109.47327 * 84.83326 * 8 6 4 10 10 H 1.48497 * 109.47284 * 204.83381 * 8 6 4 11 11 H 1.48497 * 109.46968 * 324.83553 * 8 6 4 12 12 O 1.45200 * 109.47325 * 120.00720 * 2 1 3 13 13 C 1.34228 * 116.99847 * 269.99708 * 12 2 1 14 14 O 1.20832 * 119.99975 * 359.97438 * 13 12 2 15 15 C 1.50695 * 120.00217 * 179.97438 * 13 12 2 16 16 O 1.42903 * 109.47432 * 179.97438 * 15 13 12 17 17 C 1.35942 * 116.99815 * 179.97438 * 16 15 13 18 18 C 1.38724 * 120.01467 * 179.97438 * 17 16 15 19 19 C 1.38167 * 120.01508 * 179.97438 * 18 17 16 20 20 C 1.38416 * 120.05205 * 0.02854 * 19 18 17 21 21 F 1.35095 * 119.97863 * 179.97438 * 20 19 18 22 22 C 1.38648 * 120.03779 * 359.97438 * 20 19 18 23 23 F 1.35108 * 120.00711 * 180.02562 * 22 20 19 24 24 C 1.38365 * 119.98705 * 359.72942 * 22 20 19 25 25 H 1.09001 * 109.46963 * 175.03114 * 1 2 3 26 26 H 1.08996 * 109.46481 * 295.02988 * 1 2 3 27 27 H 1.09000 * 109.47193 * 55.02857 * 1 2 3 28 28 H 0.97005 * 120.00731 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.47339 * 59.99830 * 15 13 12 30 30 H 1.09003 * 109.47101 * 299.99742 * 15 13 12 31 31 H 1.07999 * 119.99632 * 359.97438 * 18 17 16 32 32 H 1.07996 * 119.97686 * 180.02562 * 19 18 17 33 33 H 1.07998 * 120.02842 * 180.29265 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.1354 -1.7855 -1.2292 6 6 2.3601 0.0122 -2.3581 7 7 2.7057 -0.6130 -3.4623 8 14 2.3134 1.8791 -2.3174 9 1 3.5989 2.3950 -1.7822 10 1 2.1055 2.3992 -3.6927 11 1 1.1985 2.3275 -1.4449 12 8 2.0141 -0.6846 1.1855 13 6 2.2173 0.0638 2.2811 14 8 1.9984 1.2517 2.2504 15 6 2.7184 -0.5775 3.5493 16 8 2.8542 0.4183 4.5652 17 6 3.2989 0.0031 5.7809 18 6 3.4543 0.9175 6.8124 19 6 3.9058 0.4954 8.0481 20 6 4.2040 -0.8398 8.2581 21 9 4.6458 -1.2509 9.4668 22 6 4.0495 -1.7557 7.2287 23 9 4.3402 -3.0590 7.4345 24 6 3.5916 -1.3357 5.9924 25 1 -0.3633 -1.0238 -0.0890 26 1 -0.3632 0.4348 0.9312 27 1 -0.3633 0.5890 -0.8421 28 1 2.9361 -0.1047 -4.2558 29 1 3.6873 -1.0412 3.3638 30 1 2.0088 -1.3372 3.8773 31 1 3.2224 1.9597 6.6496 32 1 4.0262 1.2078 8.8508 33 1 3.4666 -2.0493 5.1914 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347051639.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:06 Heat of formation + Delta-G solvation = -203.872495 kcal Electronic energy + Delta-G solvation = -21539.060795 eV Core-core repulsion = 17587.050503 eV Total energy + Delta-G solvation = -3952.010292 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.53166 -49.60088 -41.76879 -40.91647 -38.43623 -37.49820 -35.21785 -32.78797 -32.05466 -31.18088 -29.39018 -27.47720 -24.73378 -23.82221 -23.22614 -21.55718 -19.96122 -19.55398 -18.71485 -18.48452 -18.29228 -17.84433 -17.37386 -17.29484 -17.27609 -16.31522 -16.12364 -16.01699 -15.58404 -15.18493 -15.05690 -14.70007 -14.53817 -14.22055 -14.09584 -13.77851 -13.26773 -13.16950 -13.03391 -12.93220 -12.60935 -12.39313 -12.00318 -11.98201 -11.56353 -11.39417 -11.21153 -10.89546 -10.21519 -9.34906 -8.48545 -6.58904 -0.17470 -0.09212 1.09065 1.14680 1.28213 1.30161 1.39506 2.18767 2.26087 2.42917 2.74772 2.89447 3.15828 3.49527 3.63461 3.75717 3.85634 3.97550 4.00788 4.20586 4.40673 4.56825 4.59077 4.61166 4.77649 4.86675 4.95627 4.96679 5.30143 5.36367 5.46144 5.56945 6.01346 6.11952 6.50912 6.79671 7.08861 8.66441 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.034328 B = 0.003127 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.459665 B = 8951.180852 C = 9292.785678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.184 3.816 3 H 0.039 0.961 4 C -0.532 4.532 5 H 0.052 0.948 6 C 0.037 3.963 7 N -0.921 5.921 8 Si 0.927 3.073 9 H -0.269 1.269 10 H -0.268 1.268 11 H -0.249 1.249 12 O -0.352 6.352 13 C 0.450 3.550 14 O -0.536 6.536 15 C 0.069 3.931 16 O -0.303 6.303 17 C 0.145 3.855 18 C -0.125 4.125 19 C -0.069 4.069 20 C 0.015 3.985 21 F -0.139 7.139 22 C 0.095 3.905 23 F -0.134 7.134 24 C -0.219 4.219 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.277 0.723 29 H 0.134 0.866 30 H 0.141 0.859 31 H 0.167 0.833 32 H 0.185 0.815 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.375 1.766 22.995 23.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.130 3.870 3 H 0.057 0.943 4 C -0.569 4.569 5 H 0.070 0.930 6 C -0.165 4.165 7 N -0.559 5.559 8 Si 0.749 3.251 9 H -0.194 1.194 10 H -0.192 1.192 11 H -0.173 1.173 12 O -0.268 6.268 13 C 0.293 3.707 14 O -0.426 6.426 15 C -0.006 4.006 16 O -0.216 6.216 17 C 0.099 3.901 18 C -0.144 4.144 19 C -0.088 4.088 20 C -0.005 4.005 21 F -0.118 7.118 22 C 0.075 3.925 23 F -0.113 7.113 24 C -0.238 4.238 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.152 0.848 30 H 0.159 0.841 31 H 0.185 0.815 32 H 0.202 0.798 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.316 2.243 22.709 22.857 hybrid contribution 0.297 0.011 -0.407 0.504 sum 1.613 2.254 22.302 22.474 Atomic orbital electron populations 1.22159 0.95107 1.02467 1.00898 1.20885 0.93139 0.93063 0.79867 0.94346 1.20925 1.46056 0.95060 0.94902 0.93006 1.25651 0.92992 1.03208 0.94644 1.69949 1.45049 1.38321 1.02556 0.86047 0.80255 0.80101 0.78656 1.19378 1.19234 1.17326 1.86592 1.76150 1.43467 1.20623 1.23660 0.74659 0.85864 0.86472 1.90628 1.49030 1.18085 1.84885 1.22220 1.06005 0.89889 0.82529 1.86129 1.80928 1.36123 1.18408 1.18916 0.94031 0.92121 0.85034 1.20670 1.02522 1.01277 0.89920 1.21158 0.96309 0.92865 0.98419 1.17819 1.07668 0.93938 0.81058 1.91501 1.87518 1.91054 1.41679 1.17511 1.02493 0.78233 0.94253 1.91527 1.91065 1.33260 1.95430 1.21290 1.07854 0.96690 0.97992 0.91636 0.93190 0.91642 0.91370 0.84801 0.84110 0.81548 0.79764 0.81268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.14 9.53 71.98 0.69 -5.45 16 2 C 0.18 8.76 2.22 29.85 0.07 8.83 16 3 H 0.04 1.92 4.31 -2.39 -0.01 1.91 16 4 C -0.53 -29.67 9.25 25.60 0.24 -29.43 16 5 H 0.05 3.17 8.06 -2.91 -0.02 3.14 16 6 C 0.04 2.04 5.47 84.65 0.46 2.50 16 7 N -0.92 -54.36 13.96 21.45 0.30 -54.06 16 8 Si 0.93 42.71 26.99 68.60 1.85 44.56 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.25 -10.99 6.82 99.48 0.68 -10.31 16 12 O -0.35 -14.81 9.86 -51.40 -0.51 -15.31 16 13 C 0.45 16.18 8.01 71.23 0.57 16.75 16 14 O -0.54 -22.80 15.72 28.38 0.45 -22.35 16 15 C 0.07 1.58 5.33 71.23 0.38 1.96 16 16 O -0.30 -7.31 9.67 -73.82 -0.71 -8.02 16 17 C 0.14 2.72 6.68 22.49 0.15 2.87 16 18 C -0.13 -1.85 9.98 22.37 0.22 -1.63 16 19 C -0.07 -0.88 10.02 22.30 0.22 -0.66 16 20 C 0.02 0.27 7.30 22.41 0.16 0.44 16 21 F -0.14 -2.77 17.18 44.97 0.77 -2.00 16 22 C 0.10 1.84 7.30 22.40 0.16 2.00 16 23 F -0.13 -2.93 17.18 44.97 0.77 -2.16 16 24 C -0.22 -3.78 9.01 22.40 0.20 -3.58 16 25 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 28 H 0.28 15.09 8.31 -92.70 -0.77 14.32 16 29 H 0.13 2.40 7.68 -2.39 -0.02 2.38 16 30 H 0.14 2.27 7.65 -2.39 -0.02 2.25 16 31 H 0.17 1.96 8.06 -2.91 -0.02 1.93 16 32 H 0.19 1.16 8.06 -2.91 -0.02 1.13 16 33 H 0.17 2.30 6.30 -2.91 -0.02 2.28 16 Total: -1.00 -68.80 304.53 7.58 -61.23 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: 1.13 Total: 3.53 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 3.53 Total: -5.40 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: 0.30 Total: -54.06 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -0.77 Total: -45.69 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 1.55 Total: -4.16 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.85 Total: 44.56 kcal Total: -68.80 7.58 -61.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347051639.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.645 kcal (2) G-P(sol) polarization free energy of solvation -68.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds