Wall clock time and date at job start Tue Mar 31 2020 05:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31516 * 119.99779 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 120.00284 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99617 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99691 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99860 * 8 6 4 12 12 O 1.45194 * 109.47339 * 239.99705 * 2 1 3 13 13 C 1.34235 * 116.99927 * 90.00371 * 12 2 1 14 14 O 1.20821 * 120.00047 * 359.97438 * 13 12 2 15 15 C 1.50700 * 120.00318 * 180.02562 * 13 12 2 16 16 O 1.42894 * 109.47318 * 179.97438 * 15 13 12 17 17 C 1.35948 * 116.99971 * 179.97438 * 16 15 13 18 18 C 1.38723 * 120.01946 * 179.97438 * 17 16 15 19 19 C 1.38167 * 120.01390 * 179.97438 * 18 17 16 20 20 C 1.38406 * 120.05449 * 0.02562 * 19 18 17 21 21 F 1.35100 * 119.98146 * 179.97438 * 20 19 18 22 22 C 1.38655 * 120.03969 * 0.02562 * 20 19 18 23 23 F 1.35104 * 120.00678 * 180.02562 * 22 20 19 24 24 C 1.38365 * 119.98602 * 359.71935 * 22 20 19 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 29 29 H 1.09005 * 109.47034 * 299.99883 * 15 13 12 30 30 H 1.09002 * 109.47151 * 59.99000 * 15 13 12 31 31 H 1.08002 * 119.99255 * 359.97414 * 18 17 16 32 32 H 1.07997 * 119.97392 * 180.02562 * 19 18 17 33 33 H 1.07993 * 120.02517 * 180.29580 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9758 1.9952 3.9068 11 1 0.8470 2.1765 1.4920 12 8 2.0140 -0.6845 -1.1855 13 6 2.2172 0.0640 -2.2811 14 8 1.9975 1.2517 -2.2506 15 6 2.7184 -0.5772 -3.5494 16 8 2.8531 0.4184 -4.5655 17 6 3.2986 0.0035 -5.7810 18 6 3.4521 0.9177 -6.8131 19 6 3.9054 0.4959 -8.0482 20 6 4.2064 -0.8387 -8.2574 21 9 4.6491 -1.2496 -9.4659 22 6 4.0529 -1.7546 -7.2278 23 9 4.3474 -3.0571 -7.4325 24 6 3.6040 -1.3331 -5.9886 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.9026 -0.5283 4.4376 29 1 3.6873 -1.0409 -3.3639 30 1 2.0089 -1.3370 -3.8774 31 1 3.2171 1.9593 -6.6511 32 1 4.0250 1.2082 -8.8511 33 1 3.4888 -2.0451 -5.1848 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347051640.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:10 Heat of formation + Delta-G solvation = -176.756639 kcal Electronic energy + Delta-G solvation = -21512.156209 eV Core-core repulsion = 17561.321749 eV Total energy + Delta-G solvation = -3950.834460 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.74832 -48.81412 -40.71958 -39.68228 -37.54955 -36.00347 -33.34023 -31.39506 -30.98526 -30.26012 -28.43717 -25.36997 -23.88009 -22.99004 -22.00126 -20.04973 -19.11700 -17.99969 -17.82380 -17.15887 -16.91319 -16.78641 -16.46524 -16.27242 -15.90485 -15.23566 -15.06688 -14.82428 -14.65830 -14.48112 -13.88604 -13.48119 -13.19157 -12.84872 -12.65175 -12.39754 -12.31794 -11.92742 -11.70122 -11.63257 -11.17409 -10.98536 -10.33483 -10.15510 -9.92712 -9.70393 -9.53549 -9.24756 -8.77650 -8.58511 -6.31051 -4.34757 0.52213 0.61744 2.19555 2.52680 2.95498 3.12684 3.25728 3.26793 3.41621 3.59503 3.90560 4.16474 4.18928 4.42024 4.53304 4.76700 4.84593 4.99775 5.00505 5.15055 5.31118 5.41776 5.59510 5.66190 6.03042 6.14948 6.18309 6.27382 6.46821 6.80791 6.88747 7.19547 7.37388 8.05837 8.40699 8.74314 9.24885 10.80824 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.040920 B = 0.002993 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.105676 B = 9351.862400 C = 9802.985630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.193 3.807 3 H 0.049 0.951 4 C -0.529 4.529 5 H 0.088 0.912 6 C 0.081 3.919 7 N -0.886 5.886 8 Si 0.879 3.121 9 H -0.272 1.272 10 H -0.289 1.289 11 H -0.262 1.262 12 O -0.336 6.336 13 C 0.456 3.544 14 O -0.498 6.498 15 C 0.061 3.939 16 O -0.282 6.282 17 C 0.159 3.841 18 C -0.129 4.129 19 C -0.083 4.083 20 C 0.024 3.976 21 F -0.131 7.131 22 C 0.112 3.888 23 F -0.124 7.124 24 C -0.223 4.223 25 H 0.065 0.935 26 H 0.038 0.962 27 H 0.059 0.941 28 H 0.271 0.729 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.152 0.848 32 H 0.154 0.846 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.147 0.770 -21.844 21.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.140 3.860 3 H 0.066 0.934 4 C -0.567 4.567 5 H 0.106 0.894 6 C -0.123 4.123 7 N -0.522 5.522 8 Si 0.708 3.292 9 H -0.199 1.199 10 H -0.215 1.215 11 H -0.187 1.187 12 O -0.252 6.252 13 C 0.297 3.703 14 O -0.386 6.386 15 C -0.015 4.015 16 O -0.194 6.194 17 C 0.112 3.888 18 C -0.148 4.148 19 C -0.102 4.102 20 C 0.004 3.996 21 F -0.110 7.110 22 C 0.092 3.908 23 F -0.103 7.103 24 C -0.243 4.243 25 H 0.084 0.916 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.170 0.830 32 H 0.172 0.828 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.043 1.238 -21.532 21.664 hybrid contribution -0.486 0.218 0.114 0.545 sum 1.557 1.455 -21.418 21.523 Atomic orbital electron populations 1.22546 0.98225 1.02057 1.00064 1.21028 0.90625 0.94553 0.79771 0.93351 1.20750 1.33775 1.15026 0.87111 0.89363 1.24722 0.95605 0.96750 0.95189 1.69828 1.44466 1.39862 0.98065 0.86969 0.80769 0.83534 0.77935 1.19893 1.21547 1.18657 1.86480 1.75886 1.42534 1.20289 1.22554 0.75959 0.86088 0.85733 1.90660 1.47169 1.16467 1.84268 1.22097 1.04118 0.90216 0.85018 1.86173 1.80094 1.35529 1.17590 1.18747 0.93000 0.91449 0.85575 1.20404 1.03428 1.00722 0.90228 1.20880 0.97964 0.93316 0.98046 1.17548 1.07428 0.93132 0.81476 1.91522 1.87325 1.90869 1.41273 1.17326 1.01465 0.78455 0.93564 1.91555 1.90732 1.32610 1.95355 1.21211 1.08564 0.96707 0.97795 0.91603 0.94280 0.92310 0.91917 0.87308 0.87473 0.82993 0.82807 0.82674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.74 9.03 37.16 0.34 -3.40 16 2 C 0.19 4.67 2.15 -27.88 -0.06 4.61 16 3 H 0.05 1.23 6.22 -51.93 -0.32 0.91 16 4 C -0.53 -14.64 9.48 -34.44 -0.33 -14.97 16 5 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 6 C 0.08 2.26 5.45 -17.82 -0.10 2.17 16 7 N -0.89 -26.01 13.96 55.43 0.77 -25.23 16 8 Si 0.88 21.02 24.37 -169.99 -4.14 16.87 16 9 H -0.27 -6.23 6.87 56.52 0.39 -5.85 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.26 -6.16 6.53 56.52 0.37 -5.79 16 12 O -0.34 -7.08 9.86 -39.27 -0.39 -7.46 16 13 C 0.46 8.31 8.01 36.01 0.29 8.60 16 14 O -0.50 -10.63 15.72 -25.47 -0.40 -11.03 16 15 C 0.06 0.75 5.33 36.01 0.19 0.95 16 16 O -0.28 -3.61 9.67 -39.53 -0.38 -3.99 16 17 C 0.16 1.63 6.68 -39.24 -0.26 1.37 16 18 C -0.13 -1.10 9.98 -39.43 -0.39 -1.49 16 19 C -0.08 -0.63 10.02 -39.55 -0.40 -1.03 16 20 C 0.02 0.24 7.30 -39.37 -0.29 -0.05 16 21 F -0.13 -1.39 17.18 2.25 0.04 -1.35 16 22 C 0.11 1.14 7.30 -39.38 -0.29 0.86 16 23 F -0.12 -1.39 17.18 2.25 0.04 -1.35 16 24 C -0.22 -2.11 9.01 -39.38 -0.35 -2.47 16 25 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.31 3.27 -51.93 -0.17 1.14 16 28 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 29 H 0.11 1.07 7.65 -51.93 -0.40 0.68 16 30 H 0.11 1.00 7.67 -51.93 -0.40 0.60 16 31 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 33 H 0.16 1.21 6.30 -52.49 -0.33 0.88 16 LS Contribution 298.06 15.07 4.49 4.49 Total: -1.00 -31.73 298.06 -4.53 -36.26 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: -2.91 Total: -2.35 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -1.65 Total: -4.86 kcal Atomic # 7 Polarization: -26.01 SS G_CDS: 0.77 Total: -25.23 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -1.17 Total: -22.49 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.08 Total: -2.70 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.14 Total: 16.87 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.73 -4.53 -36.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347051640.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.495 kcal (2) G-P(sol) polarization free energy of solvation -31.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds