Wall clock time and date at job start Tue Mar 31 2020 05:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31516 * 119.99779 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 120.00284 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99617 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99691 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99860 * 8 6 4 12 12 O 1.45194 * 109.47339 * 239.99705 * 2 1 3 13 13 C 1.34235 * 116.99927 * 90.00371 * 12 2 1 14 14 O 1.20821 * 120.00047 * 359.97438 * 13 12 2 15 15 C 1.50700 * 120.00318 * 180.02562 * 13 12 2 16 16 O 1.42894 * 109.47318 * 179.97438 * 15 13 12 17 17 C 1.35948 * 116.99971 * 179.97438 * 16 15 13 18 18 C 1.38723 * 120.01946 * 179.97438 * 17 16 15 19 19 C 1.38167 * 120.01390 * 179.97438 * 18 17 16 20 20 C 1.38406 * 120.05449 * 0.02562 * 19 18 17 21 21 F 1.35100 * 119.98146 * 179.97438 * 20 19 18 22 22 C 1.38655 * 120.03969 * 0.02562 * 20 19 18 23 23 F 1.35104 * 120.00678 * 180.02562 * 22 20 19 24 24 C 1.38365 * 119.98602 * 359.71935 * 22 20 19 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 29 29 H 1.09005 * 109.47034 * 299.99883 * 15 13 12 30 30 H 1.09002 * 109.47151 * 59.99000 * 15 13 12 31 31 H 1.08002 * 119.99255 * 359.97414 * 18 17 16 32 32 H 1.07997 * 119.97392 * 180.02562 * 19 18 17 33 33 H 1.07993 * 120.02517 * 180.29580 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9758 1.9952 3.9068 11 1 0.8470 2.1765 1.4920 12 8 2.0140 -0.6845 -1.1855 13 6 2.2172 0.0640 -2.2811 14 8 1.9975 1.2517 -2.2506 15 6 2.7184 -0.5772 -3.5494 16 8 2.8531 0.4184 -4.5655 17 6 3.2986 0.0035 -5.7810 18 6 3.4521 0.9177 -6.8131 19 6 3.9054 0.4959 -8.0482 20 6 4.2064 -0.8387 -8.2574 21 9 4.6491 -1.2496 -9.4659 22 6 4.0529 -1.7546 -7.2278 23 9 4.3474 -3.0571 -7.4325 24 6 3.6040 -1.3331 -5.9886 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.9026 -0.5283 4.4376 29 1 3.6873 -1.0409 -3.3639 30 1 2.0089 -1.3370 -3.8774 31 1 3.2171 1.9593 -6.6511 32 1 4.0250 1.2082 -8.8511 33 1 3.4888 -2.0451 -5.1848 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347051640.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:09 Heat of formation + Delta-G solvation = -196.006304 kcal Electronic energy + Delta-G solvation = -21512.990938 eV Core-core repulsion = 17561.321749 eV Total energy + Delta-G solvation = -3951.669188 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.52930 -49.59846 -41.80650 -40.95049 -38.46060 -37.56798 -35.33382 -32.84587 -32.05725 -31.20633 -29.42374 -27.35965 -24.79679 -23.88063 -23.36596 -21.63888 -19.95838 -19.35704 -18.71137 -18.45197 -18.32611 -17.87400 -17.46052 -17.33204 -17.28481 -16.49560 -16.18225 -16.01712 -15.58259 -15.19629 -15.11894 -14.86842 -14.41622 -14.28886 -14.14260 -13.84771 -13.51745 -13.27892 -13.13976 -12.86442 -12.39411 -12.24972 -12.00572 -11.79816 -11.70388 -11.40733 -11.25710 -10.84908 -10.21269 -9.34878 -8.45502 -6.55020 -0.17237 -0.09056 1.07459 1.10905 1.24526 1.32375 1.41245 2.19235 2.26286 2.42308 2.75165 2.87502 3.15407 3.47546 3.58712 3.73737 3.85455 3.96586 3.99972 4.22168 4.38143 4.41144 4.51092 4.59823 4.73069 4.77963 4.95762 4.96843 5.17991 5.31116 5.45882 5.55355 6.00687 6.10605 6.49847 6.75508 7.09627 8.70225 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.040920 B = 0.002993 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.105676 B = 9351.862400 C = 9802.985630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.195 3.805 3 H 0.034 0.966 4 C -0.541 4.541 5 H 0.051 0.949 6 C 0.031 3.969 7 N -0.929 5.929 8 Si 0.939 3.061 9 H -0.250 1.250 10 H -0.285 1.285 11 H -0.256 1.256 12 O -0.345 6.345 13 C 0.452 3.548 14 O -0.532 6.532 15 C 0.071 3.929 16 O -0.302 6.302 17 C 0.145 3.855 18 C -0.125 4.125 19 C -0.069 4.069 20 C 0.015 3.985 21 F -0.139 7.139 22 C 0.095 3.905 23 F -0.134 7.134 24 C -0.219 4.219 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.276 0.724 29 H 0.136 0.864 30 H 0.143 0.857 31 H 0.167 0.833 32 H 0.185 0.815 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.256 1.776 -23.521 23.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.141 3.859 3 H 0.051 0.949 4 C -0.579 4.579 5 H 0.069 0.931 6 C -0.169 4.169 7 N -0.567 5.567 8 Si 0.764 3.236 9 H -0.176 1.176 10 H -0.211 1.211 11 H -0.181 1.181 12 O -0.261 6.261 13 C 0.295 3.705 14 O -0.421 6.421 15 C -0.004 4.004 16 O -0.216 6.216 17 C 0.099 3.901 18 C -0.143 4.143 19 C -0.088 4.088 20 C -0.005 4.005 21 F -0.118 7.118 22 C 0.075 3.925 23 F -0.113 7.113 24 C -0.238 4.238 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.154 0.846 30 H 0.160 0.840 31 H 0.185 0.815 32 H 0.202 0.798 33 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.154 2.226 -23.242 23.377 hybrid contribution -0.100 -0.132 0.529 0.554 sum 1.054 2.093 -22.714 22.834 Atomic orbital electron populations 1.22437 0.96032 1.02933 1.00919 1.20695 0.92210 0.93147 0.79890 0.94875 1.20946 1.33495 1.14153 0.89279 0.93112 1.25550 0.96879 0.99806 0.94668 1.69951 1.46093 1.41856 0.98821 0.85996 0.79935 0.79608 0.78023 1.17550 1.21145 1.18073 1.86456 1.76316 1.42766 1.20555 1.23650 0.74688 0.85776 0.86340 1.90639 1.48700 1.18039 1.84765 1.22185 1.06098 0.89815 0.82350 1.86123 1.80934 1.36097 1.18416 1.18902 0.94026 0.92131 0.85002 1.20670 1.02475 1.01278 0.89923 1.21155 0.96300 0.92870 0.98443 1.17827 1.07620 0.93939 0.81098 1.91503 1.87482 1.91059 1.41727 1.17515 1.02524 0.78242 0.94228 1.91527 1.90980 1.33332 1.95452 1.21293 1.07867 0.96739 0.97894 0.90785 0.92169 0.92585 0.91488 0.84636 0.83999 0.81524 0.79782 0.81224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.93 9.03 71.98 0.65 -6.28 16 2 C 0.19 9.34 2.15 29.85 0.06 9.40 16 3 H 0.03 1.69 6.22 -2.39 -0.01 1.68 16 4 C -0.54 -30.57 9.48 25.60 0.24 -30.32 16 5 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 6 C 0.03 1.75 5.45 84.65 0.46 2.21 16 7 N -0.93 -55.58 13.96 21.45 0.30 -55.28 16 8 Si 0.94 42.81 24.37 68.60 1.67 44.49 16 9 H -0.25 -10.50 6.87 99.48 0.68 -9.81 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.26 -11.39 6.53 99.48 0.65 -10.74 16 12 O -0.34 -14.34 9.86 -51.46 -0.51 -14.85 16 13 C 0.45 15.92 8.01 71.24 0.57 16.49 16 14 O -0.53 -22.28 15.72 28.41 0.45 -21.84 16 15 C 0.07 1.56 5.33 71.24 0.38 1.94 16 16 O -0.30 -7.08 9.67 -73.89 -0.71 -7.80 16 17 C 0.15 2.64 6.68 22.49 0.15 2.79 16 18 C -0.12 -1.79 9.98 22.37 0.22 -1.56 16 19 C -0.07 -0.86 10.02 22.29 0.22 -0.63 16 20 C 0.02 0.27 7.30 22.41 0.16 0.43 16 21 F -0.14 -2.74 17.18 44.97 0.77 -1.97 16 22 C 0.10 1.80 7.30 22.40 0.16 1.96 16 23 F -0.13 -2.89 17.18 44.97 0.77 -2.12 16 24 C -0.22 -3.66 9.01 22.40 0.20 -3.46 16 25 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 26 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.06 2.35 3.27 -2.38 -0.01 2.34 16 28 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 29 H 0.14 2.30 7.65 -2.38 -0.02 2.28 16 30 H 0.14 2.17 7.67 -2.39 -0.02 2.16 16 31 H 0.17 1.88 8.06 -2.91 -0.02 1.85 16 32 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 33 H 0.17 2.20 6.30 -2.91 -0.02 2.18 16 Total: -1.00 -69.99 298.06 7.32 -62.68 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: 1.08 Total: 3.73 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 3.49 Total: -7.03 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 0.30 Total: -55.28 kcal Atomic # 8 Polarization: -43.71 SS G_CDS: -0.78 Total: -44.49 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 1.55 Total: -4.09 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.67 Total: 44.49 kcal Total: -69.99 7.32 -62.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347051640.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.329 kcal (2) G-P(sol) polarization free energy of solvation -69.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds