Wall clock time and date at job start Tue Mar 31 2020 05:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86804 * 119.99903 * 2 1 4 4 H 1.48494 * 109.46856 * 269.99645 * 3 2 1 5 5 H 1.48500 * 109.47199 * 29.99759 * 3 2 1 6 6 H 1.48493 * 109.46829 * 149.99762 * 3 2 1 7 7 C 1.37875 * 119.99682 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00413 * 0.02562 * 7 2 1 9 9 C 1.50710 * 119.99656 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47077 * 180.02562 * 9 7 2 11 11 S 1.81394 * 109.47074 * 179.97438 * 10 9 7 12 12 O 1.42103 * 110.54082 * 68.37601 * 11 10 9 13 13 O 1.42096 * 110.54557 * 291.62545 * 11 10 9 14 14 C 1.76196 * 104.44849 * 179.97438 * 11 10 9 15 15 N 1.30296 * 126.34299 * 89.97961 * 14 11 10 16 16 N 1.28528 * 110.05377 * 180.02562 * 15 14 11 17 17 C 1.31218 * 109.86128 * 0.02562 * 16 15 14 18 18 N 1.38576 * 126.47819 * 179.97438 * 17 16 15 19 19 N 1.36456 * 107.05165 * 0.22259 * 17 16 15 20 20 C 1.46502 * 127.13546 * 179.78110 * 19 17 16 21 21 C 1.52997 * 117.49887 * 314.45931 * 20 19 17 22 22 C 1.53003 * 117.49531 * 245.80346 * 20 19 17 23 23 H 0.97001 * 119.99518 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46705 * 59.99827 * 9 7 2 25 25 H 1.09005 * 109.46757 * 300.00346 * 9 7 2 26 26 H 1.08998 * 109.46818 * 59.99944 * 10 9 7 27 27 H 1.09000 * 109.46638 * 300.00144 * 10 9 7 28 28 H 0.97000 * 119.99650 * 354.02555 * 18 17 16 29 29 H 0.97004 * 120.00512 * 173.75680 * 18 17 16 30 30 H 1.08999 * 115.55510 * 100.13948 * 20 19 17 31 31 H 1.09005 * 117.49755 * 0.02562 * 21 20 19 32 32 H 1.08998 * 117.49860 * 145.02509 * 21 20 19 33 33 H 1.09004 * 117.49795 * 214.98112 * 22 20 19 34 34 H 1.09002 * 117.49945 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0216 -2.6366 0.0010 11 16 5.8356 -2.6366 0.0009 12 8 6.3342 -2.1463 1.2380 13 8 6.3342 -2.1461 -1.2360 14 6 6.2752 -4.3428 0.0016 15 7 6.4675 -5.0910 -1.0477 16 7 6.7749 -6.2856 -0.6867 17 6 6.7949 -6.3644 0.6229 18 7 7.0842 -7.4910 1.3762 19 7 6.4715 -5.1288 1.1031 20 6 6.3611 -4.7268 2.5075 21 6 5.5987 -5.6589 3.4513 22 6 4.9761 -4.3283 3.0214 23 1 -0.4849 0.8401 -0.0004 24 1 3.8745 -0.6800 0.8911 25 1 3.8752 -0.6803 -0.8889 26 1 3.6586 -3.1501 -0.8892 27 1 3.6579 -3.1505 0.8907 28 1 7.2139 -8.3469 0.9384 29 1 7.1609 -7.4231 2.3408 30 1 7.2209 -4.1934 2.9129 31 1 5.1797 -6.5715 3.0274 32 1 5.9568 -5.7386 4.4777 33 1 4.9249 -3.5331 3.7652 34 1 4.1472 -4.3649 2.3145 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347177761.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:39 Heat of formation + Delta-G solvation = 44.696994 kcal Electronic energy + Delta-G solvation = -20979.736116 eV Core-core repulsion = 17656.930495 eV Total energy + Delta-G solvation = -3322.805621 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.09241 -38.10830 -36.74401 -35.73083 -35.19061 -34.05625 -32.91081 -31.57345 -29.51930 -26.13566 -24.41819 -23.55899 -22.44215 -21.47342 -21.18073 -18.97124 -18.17024 -17.63379 -17.00133 -16.91019 -16.45687 -15.96523 -15.56912 -15.43593 -15.01025 -14.34858 -13.83169 -13.65016 -12.85563 -12.18471 -12.13851 -11.93909 -11.88368 -11.80440 -11.76555 -11.62522 -11.53554 -11.32325 -11.26453 -11.06356 -10.54531 -10.48796 -10.30798 -10.18087 -9.73374 -9.44024 -8.69892 -8.55639 -6.20189 -4.22544 0.19458 1.34464 1.83213 2.63488 2.92839 2.98091 3.16477 3.25171 3.32493 3.35313 4.01449 4.11534 4.20283 4.27275 4.32560 4.48997 4.85917 5.03538 5.09003 5.15952 5.29293 5.37457 5.48557 5.60558 5.61046 5.64336 6.08198 6.15729 6.72215 6.85072 6.88531 7.04039 7.47830 8.31303 8.44423 8.80367 9.38515 10.91930 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.024591 B = 0.005196 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.370248 B = 5387.719160 C = 5742.364114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.074 3.926 3 Si 0.868 3.132 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.520 4.520 8 H 0.079 0.921 9 C -0.007 4.007 10 C -0.550 4.550 11 S 2.499 3.501 12 O -0.930 6.930 13 O -0.913 6.913 14 C -0.362 4.362 15 N -0.166 5.166 16 N -0.341 5.341 17 C 0.471 3.529 18 N -0.823 5.823 19 N -0.433 5.433 20 C 0.040 3.960 21 C -0.174 4.174 22 C -0.162 4.162 23 H 0.267 0.733 24 H 0.037 0.963 25 H 0.034 0.966 26 H 0.137 0.863 27 H 0.128 0.872 28 H 0.425 0.575 29 H 0.411 0.589 30 H 0.151 0.849 31 H 0.105 0.895 32 H 0.120 0.880 33 H 0.129 0.871 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.438 -13.174 9.521 20.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.129 4.129 3 Si 0.694 3.306 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.559 4.559 8 H 0.097 0.903 9 C -0.046 4.046 10 C -0.685 4.685 11 S 2.673 3.327 12 O -0.926 6.926 13 O -0.909 6.909 14 C -0.705 4.705 15 N -0.009 5.009 16 N -0.194 5.194 17 C 0.112 3.888 18 N -0.380 5.380 19 N -0.133 5.133 20 C -0.063 4.063 21 C -0.212 4.212 22 C -0.199 4.199 23 H 0.077 0.923 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.155 0.845 27 H 0.146 0.854 28 H 0.258 0.742 29 H 0.243 0.757 30 H 0.169 0.831 31 H 0.123 0.877 32 H 0.139 0.861 33 H 0.148 0.852 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 13.044 -12.812 8.058 19.980 hybrid contribution 0.010 -0.022 1.524 1.524 sum 13.053 -12.833 9.582 20.661 Atomic orbital electron populations 1.69877 1.06227 1.27351 1.49665 1.24957 0.94797 0.99121 0.94014 0.86950 0.80675 0.83682 0.79332 1.19491 1.20745 1.18514 1.20779 0.87392 0.95049 1.52730 0.90260 1.19504 1.00040 0.86676 0.98409 1.30071 1.16647 1.10057 1.11730 1.06398 0.80283 0.70897 0.75120 1.93535 1.79285 1.75445 1.44355 1.93586 1.78904 1.74558 1.43892 1.38297 1.22508 1.23093 0.86567 1.73957 1.07438 0.96379 1.23098 1.74637 1.27048 1.12820 1.04883 1.21568 0.95335 0.82363 0.89493 1.41013 1.81787 1.06404 1.08826 1.45356 1.53813 1.07495 1.06606 1.22309 1.00178 1.06232 0.77630 1.23510 1.02423 0.95562 0.99695 1.23623 0.93816 0.98651 1.03831 0.92283 0.94494 0.94810 0.84481 0.85394 0.74162 0.75748 0.83136 0.87678 0.86131 0.85247 0.87191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.96 55.43 0.77 -25.49 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.87 20.64 27.47 -169.99 -4.67 15.97 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 7 C -0.52 -13.91 9.66 -34.44 -0.33 -14.24 16 8 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.15 4.05 -27.88 -0.11 -0.27 16 10 C -0.55 -9.84 5.92 37.16 0.22 -9.62 16 11 S 2.50 44.24 5.26 -107.50 -0.57 43.67 16 12 O -0.93 -16.43 16.24 -57.54 -0.93 -17.36 16 13 O -0.91 -19.03 17.94 -57.54 -1.03 -20.06 16 14 C -0.36 -6.08 7.71 -88.98 -0.69 -6.77 16 15 N -0.17 -3.08 12.17 30.55 0.37 -2.71 16 16 N -0.34 -5.70 12.23 30.31 0.37 -5.33 16 17 C 0.47 6.13 9.02 -318.88 -2.88 3.25 16 18 N -0.82 -6.05 8.78 30.31 0.27 -5.78 16 19 N -0.43 -5.85 3.10 -110.63 -0.34 -6.20 16 20 C 0.04 0.41 5.12 -67.93 -0.35 0.06 16 21 C -0.17 -1.14 9.07 -26.70 -0.24 -1.39 16 22 C -0.16 -1.55 10.14 -26.69 -0.27 -1.82 16 23 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.04 0.80 7.20 -51.93 -0.37 0.42 16 25 H 0.03 0.75 7.57 -51.93 -0.39 0.36 16 26 H 0.14 2.32 8.14 -51.92 -0.42 1.90 16 27 H 0.13 1.96 6.37 -51.92 -0.33 1.63 16 28 H 0.43 2.32 8.95 -40.82 -0.37 1.95 16 29 H 0.41 1.89 7.46 -40.82 -0.30 1.59 16 30 H 0.15 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.10 0.66 7.73 -51.93 -0.40 0.26 16 32 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.13 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.11 1.16 6.40 -51.93 -0.33 0.83 16 LS Contribution 304.61 15.07 4.59 4.59 Total: -1.00 -36.01 304.61 -9.70 -45.71 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -3.78 Total: 1.81 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: -4.75 Total: -28.82 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 1.44 Total: -45.51 kcal Atomic # 8 Polarization: -35.46 SS G_CDS: -1.97 Total: -37.43 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.67 Total: 15.97 kcal Atomic # 16 Polarization: 44.24 SS G_CDS: -0.57 Total: 43.67 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -36.01 -9.70 -45.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347177761.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.404 kcal (2) G-P(sol) polarization free energy of solvation -36.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds