Wall clock time and date at job start Tue Mar 31 2020 05:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00000 * 2 1 4 4 H 1.48507 * 109.47151 * 239.99866 * 3 2 1 5 5 H 1.48493 * 109.47172 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46733 * 120.00421 * 3 2 1 7 7 C 1.37879 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00427 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99601 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46863 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99841 * 179.97438 * 10 9 7 12 12 O 1.21690 * 120.00164 * 359.97438 * 11 10 9 13 13 C 1.46727 * 119.99892 * 179.97438 * 11 10 9 14 14 O 1.35338 * 126.64603 * 0.28276 * 13 11 10 15 15 C 1.33657 * 107.68953 * 180.14301 * 14 13 11 16 16 C 1.50699 * 125.42919 * 179.87302 * 15 14 13 17 17 C 1.53000 * 117.50321 * 239.72246 * 16 15 14 18 18 C 1.52997 * 117.50247 * 171.09346 * 16 15 14 19 19 N 1.30624 * 109.15058 * 359.61185 * 15 14 13 20 20 C 1.33689 * 108.99760 * 0.23886 * 19 15 14 21 21 C 1.50700 * 126.27632 * 180.02562 * 20 19 15 22 22 F 1.39899 * 109.47003 * 30.02823 * 21 20 19 23 23 F 1.39898 * 109.47171 * 150.02904 * 21 20 19 24 24 H 0.96999 * 119.99503 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47553 * 60.00424 * 9 7 2 26 26 H 1.08999 * 109.47479 * 300.00050 * 9 7 2 27 27 H 0.96992 * 120.00330 * 0.02562 * 10 9 7 28 28 H 1.09002 * 115.55636 * 25.40646 * 16 15 14 29 29 H 1.08990 * 117.49990 * 145.01584 * 17 16 15 30 30 H 1.09004 * 117.49237 * 359.97438 * 17 16 15 31 31 H 1.08999 * 117.49685 * 0.02562 * 18 16 15 32 32 H 1.08997 * 117.50044 * 214.98057 * 18 16 15 33 33 H 1.08998 * 109.46987 * 270.02853 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7537 -4.8833 0.0000 12 8 0.5572 -5.1057 0.0009 13 6 2.7071 -5.9986 -0.0006 14 8 4.0574 -5.9070 0.0037 15 6 4.5488 -7.1499 -0.0018 16 6 6.0119 -7.5109 -0.0024 17 6 6.5349 -8.3389 -1.1779 18 6 6.3766 -8.9828 0.2010 19 7 3.5588 -8.0021 -0.0009 20 6 2.4043 -7.3280 -0.0001 21 6 1.0217 -7.9276 0.0015 22 9 1.0489 -9.1605 0.6621 23 9 0.1399 -7.0645 0.6609 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 3.1566 -3.4355 -0.0002 28 1 6.6809 -6.7631 0.4236 29 1 7.5478 -8.1359 -1.5252 30 1 5.8205 -8.6229 -1.9506 31 1 5.5582 -9.6902 0.3349 32 1 7.2855 -9.2034 0.7607 33 1 0.6876 -8.0731 -1.0257 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349759469.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:30 Heat of formation + Delta-G solvation = -85.862112 kcal Electronic energy + Delta-G solvation = -22208.851142 eV Core-core repulsion = 18294.250915 eV Total energy + Delta-G solvation = -3914.600226 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.75107 -46.73126 -43.61480 -38.87590 -37.61953 -35.33619 -34.33003 -32.46725 -31.01925 -27.88887 -26.64340 -25.11691 -23.03987 -22.78617 -21.67787 -21.02924 -20.26128 -18.53988 -17.62568 -17.45472 -16.84740 -16.66968 -16.00684 -15.92890 -15.41491 -15.05706 -14.46739 -14.38834 -14.32958 -13.53081 -13.30034 -13.02227 -12.75443 -12.59252 -12.08088 -12.04505 -11.94047 -11.76040 -11.42704 -11.09710 -11.06646 -11.03096 -10.93142 -10.86920 -10.40421 -9.60730 -9.50679 -9.00926 -8.83104 -8.09050 -6.23888 -4.31786 0.67526 2.04356 2.15423 3.18415 3.21729 3.26636 3.28017 3.42216 3.45660 3.66905 3.92773 4.24301 4.27652 4.36783 4.48056 4.52600 4.81469 4.94710 5.12561 5.21132 5.26124 5.34321 5.43072 5.47123 5.63376 5.76490 5.83223 7.08797 7.10624 7.32274 7.36871 7.54111 7.85020 8.34600 8.54807 8.80309 9.34443 10.86132 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.017914 B = 0.004360 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.682494 B = 6420.322393 C = 7873.905915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.548 4.548 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.689 5.689 11 C 0.575 3.425 12 O -0.502 6.502 13 C -0.039 4.039 14 O -0.175 6.175 15 C 0.241 3.759 16 C -0.085 4.085 17 C -0.152 4.152 18 C -0.145 4.145 19 N -0.461 5.461 20 C -0.028 4.028 21 C 0.358 3.642 22 F -0.194 7.194 23 F -0.159 7.159 24 H 0.268 0.732 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.396 0.604 28 H 0.139 0.861 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.063 -16.287 -1.767 20.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.138 4.138 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.082 0.918 9 C 0.128 3.872 10 N -0.336 5.336 11 C 0.356 3.644 12 O -0.380 6.380 13 C -0.096 4.096 14 O -0.060 6.060 15 C 0.036 3.964 16 C -0.104 4.104 17 C -0.190 4.190 18 C -0.182 4.182 19 N -0.189 5.189 20 C -0.153 4.153 21 C 0.304 3.696 22 F -0.176 7.176 23 F -0.140 7.140 24 H 0.078 0.922 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.230 0.770 28 H 0.157 0.843 29 H 0.128 0.872 30 H 0.121 0.879 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.088 -16.857 -1.724 20.250 hybrid contribution 0.828 1.812 0.161 1.999 sum 11.916 -15.044 -1.562 19.255 Atomic orbital electron populations 1.69957 1.06104 1.27635 1.48364 1.24935 0.94939 0.99472 0.94472 0.86436 0.79412 0.82106 0.78756 1.20003 1.20968 1.20005 1.21137 0.93310 0.90209 1.53979 0.91807 1.19303 0.88082 0.81369 0.98416 1.46499 1.11964 1.05343 1.69825 1.16527 0.86113 0.81635 0.80104 1.90979 1.12977 1.83064 1.50942 1.23741 0.80278 0.97307 1.08298 1.84503 1.20030 1.32942 1.68554 1.25275 0.96281 0.76668 0.98223 1.20163 0.84747 0.97565 1.07923 1.23158 1.02845 1.01122 0.91880 1.23133 1.03862 0.92203 0.98985 1.70060 0.96591 1.33456 1.18803 1.22419 0.96031 0.90190 1.06673 1.19278 0.82673 0.73736 0.93962 1.93005 1.96840 1.43861 1.83859 1.93230 1.68525 1.69002 1.83241 0.92227 0.94743 0.94727 0.77044 0.84317 0.87151 0.87869 0.86919 0.87252 0.85480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.46 13.29 55.43 0.74 -24.72 16 2 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.91 20.48 29.54 -169.99 -5.02 15.46 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.55 -14.57 9.28 -34.44 -0.32 -14.89 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.40 5.43 -5.19 -0.03 6.37 16 10 N -0.69 -14.64 5.54 -62.78 -0.35 -14.99 16 11 C 0.58 11.83 7.74 -12.83 -0.10 11.73 16 12 O -0.50 -11.59 13.13 5.20 0.07 -11.52 16 13 C -0.04 -0.68 7.15 -36.84 -0.26 -0.94 16 14 O -0.17 -2.68 10.57 4.46 0.05 -2.63 16 15 C 0.24 3.22 7.87 -12.79 -0.10 3.12 16 16 C -0.08 -0.75 6.33 -91.77 -0.58 -1.33 16 17 C -0.15 -1.04 10.24 -26.73 -0.27 -1.31 16 18 C -0.14 -1.02 10.13 -26.73 -0.27 -1.29 16 19 N -0.46 -6.87 10.75 -7.07 -0.08 -6.95 16 20 C -0.03 -0.46 6.78 -82.46 -0.56 -1.02 16 21 C 0.36 5.47 5.63 36.01 0.20 5.67 16 22 F -0.19 -2.98 17.29 2.25 0.04 -2.94 16 23 F -0.16 -2.96 13.49 2.25 0.03 -2.93 16 24 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.03 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.40 7.48 8.12 -40.82 -0.33 7.15 16 28 H 0.14 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.11 0.96 7.87 -51.93 -0.41 0.55 16 32 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.13 1.51 8.14 -51.93 -0.42 1.09 16 LS Contribution 305.81 15.07 4.61 4.61 Total: -1.00 -31.53 305.81 -5.54 -37.07 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -3.23 Total: 1.74 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: -2.39 Total: 7.80 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 0.31 Total: -46.66 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.12 Total: -14.15 kcal Atomic # 9 Polarization: -5.94 SS G_CDS: 0.07 Total: -5.87 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.53 -5.54 -37.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349759469.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.791 kcal (2) G-P(sol) polarization free energy of solvation -31.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds