Wall clock time and date at job start Tue Mar 31 2020 05:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00000 * 2 1 4 4 H 1.48507 * 109.47151 * 239.99866 * 3 2 1 5 5 H 1.48493 * 109.47172 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46733 * 120.00421 * 3 2 1 7 7 C 1.37879 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00427 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99601 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46863 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99841 * 179.97438 * 10 9 7 12 12 O 1.21690 * 120.00164 * 359.97438 * 11 10 9 13 13 C 1.46727 * 119.99892 * 179.97438 * 11 10 9 14 14 O 1.35338 * 126.64603 * 0.28276 * 13 11 10 15 15 C 1.33657 * 107.68953 * 180.14301 * 14 13 11 16 16 C 1.50699 * 125.42919 * 179.87302 * 15 14 13 17 17 C 1.53000 * 117.50321 * 239.72246 * 16 15 14 18 18 C 1.52997 * 117.50247 * 171.09346 * 16 15 14 19 19 N 1.30624 * 109.15058 * 359.61185 * 15 14 13 20 20 C 1.33689 * 108.99760 * 0.23886 * 19 15 14 21 21 C 1.50700 * 126.27632 * 180.02562 * 20 19 15 22 22 F 1.39899 * 109.47003 * 30.02823 * 21 20 19 23 23 F 1.39898 * 109.47171 * 150.02904 * 21 20 19 24 24 H 0.96999 * 119.99503 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47553 * 60.00424 * 9 7 2 26 26 H 1.08999 * 109.47479 * 300.00050 * 9 7 2 27 27 H 0.96992 * 120.00330 * 0.02562 * 10 9 7 28 28 H 1.09002 * 115.55636 * 25.40646 * 16 15 14 29 29 H 1.08990 * 117.49990 * 145.01584 * 17 16 15 30 30 H 1.09004 * 117.49237 * 359.97438 * 17 16 15 31 31 H 1.08999 * 117.49685 * 0.02562 * 18 16 15 32 32 H 1.08997 * 117.50044 * 214.98057 * 18 16 15 33 33 H 1.08998 * 109.46987 * 270.02853 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7537 -4.8833 0.0000 12 8 0.5572 -5.1057 0.0009 13 6 2.7071 -5.9986 -0.0006 14 8 4.0574 -5.9070 0.0037 15 6 4.5488 -7.1499 -0.0018 16 6 6.0119 -7.5109 -0.0024 17 6 6.5349 -8.3389 -1.1779 18 6 6.3766 -8.9828 0.2010 19 7 3.5588 -8.0021 -0.0009 20 6 2.4043 -7.3280 -0.0001 21 6 1.0217 -7.9276 0.0015 22 9 1.0489 -9.1605 0.6621 23 9 0.1399 -7.0645 0.6609 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 3.1566 -3.4355 -0.0002 28 1 6.6809 -6.7631 0.4236 29 1 7.5478 -8.1359 -1.5252 30 1 5.8205 -8.6229 -1.9506 31 1 5.5582 -9.6902 0.3349 32 1 7.2855 -9.2034 0.7607 33 1 0.6876 -8.0731 -1.0257 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349759469.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:30 Heat of formation + Delta-G solvation = -109.214319 kcal Electronic energy + Delta-G solvation = -22209.863770 eV Core-core repulsion = 18294.250915 eV Total energy + Delta-G solvation = -3915.612854 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.03788 -48.04276 -44.82561 -40.56363 -38.30212 -36.68031 -36.08799 -34.44409 -32.29894 -29.70966 -28.03658 -26.31412 -24.77842 -23.39822 -23.02697 -22.07458 -21.75605 -20.07451 -18.86086 -18.77331 -18.08409 -17.98848 -17.82023 -17.19481 -16.87019 -16.35072 -16.15241 -15.63509 -15.58355 -14.98073 -14.84979 -14.36073 -14.09465 -14.07004 -13.93088 -13.42414 -13.02995 -12.96489 -12.70419 -12.55828 -12.43510 -12.27052 -12.12769 -11.91114 -11.58220 -11.55347 -11.28809 -10.83901 -10.27292 -9.93045 -8.31364 -6.48314 -0.63246 0.90206 0.94743 1.43368 1.46932 1.55322 1.81497 2.06763 2.11116 2.40501 2.71162 2.87152 3.03943 3.08077 3.35060 3.66495 3.75796 3.88667 3.92623 4.03239 4.04870 4.29380 4.67508 4.78889 4.91279 5.01161 5.09723 5.17689 5.25640 5.27450 5.53459 5.77419 6.10700 6.52983 6.62487 7.00729 7.25345 8.80317 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.017914 B = 0.004360 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.682494 B = 6420.322393 C = 7873.905915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.562 4.562 8 H 0.082 0.918 9 C 0.266 3.734 10 N -0.688 5.688 11 C 0.580 3.420 12 O -0.534 6.534 13 C -0.069 4.069 14 O -0.176 6.176 15 C 0.263 3.737 16 C -0.109 4.109 17 C -0.137 4.137 18 C -0.135 4.135 19 N -0.477 5.477 20 C -0.015 4.015 21 C 0.352 3.648 22 F -0.194 7.194 23 F -0.181 7.181 24 H 0.270 0.730 25 H 0.003 0.997 26 H 0.000 1.000 27 H 0.409 0.591 28 H 0.163 0.837 29 H 0.141 0.859 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.139 0.861 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.342 -16.790 -2.111 22.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.599 4.599 8 H 0.100 0.900 9 C 0.144 3.856 10 N -0.336 5.336 11 C 0.364 3.636 12 O -0.413 6.413 13 C -0.126 4.126 14 O -0.063 6.063 15 C 0.058 3.942 16 C -0.128 4.128 17 C -0.174 4.174 18 C -0.172 4.172 19 N -0.205 5.205 20 C -0.140 4.140 21 C 0.297 3.703 22 F -0.175 7.175 23 F -0.162 7.162 24 H 0.079 0.921 25 H 0.021 0.979 26 H 0.017 0.983 27 H 0.244 0.756 28 H 0.181 0.819 29 H 0.159 0.841 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.157 0.843 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 14.402 -17.401 -2.068 22.683 hybrid contribution -0.101 1.777 0.263 1.800 sum 14.301 -15.624 -1.805 21.257 Atomic orbital electron populations 1.70111 1.08124 1.28798 1.49432 1.25999 0.95774 1.03681 0.93651 0.85220 0.77963 0.76681 0.79453 1.18654 1.20917 1.18833 1.21522 0.94256 0.90454 1.53698 0.90037 1.18766 0.88323 0.83191 0.95320 1.46178 1.11845 1.04862 1.70740 1.16723 0.86359 0.81885 0.78658 1.90954 1.14658 1.83765 1.51920 1.22845 0.80977 0.96304 1.12496 1.84491 1.18854 1.33986 1.68971 1.26440 0.97912 0.75625 0.94266 1.20683 0.82103 0.99434 1.10577 1.23300 1.03867 0.99088 0.91168 1.23254 1.04322 0.90088 0.99528 1.70166 0.96363 1.33493 1.20468 1.22652 0.96971 0.89891 1.04496 1.19726 0.82031 0.73177 0.95332 1.92999 1.96790 1.43633 1.84085 1.93185 1.69279 1.69912 1.83852 0.92068 0.97870 0.98252 0.75574 0.81909 0.84132 0.88972 0.88612 0.84299 0.81823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.76 13.29 21.45 0.28 -54.47 16 2 C 0.01 0.51 5.46 84.65 0.46 0.97 16 3 Si 0.98 41.65 29.54 68.60 2.03 43.68 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.56 -30.19 9.28 25.60 0.24 -29.95 16 8 H 0.08 3.99 7.60 -2.91 -0.02 3.97 16 9 C 0.27 14.34 5.43 85.63 0.46 14.81 16 10 N -0.69 -30.12 5.54 -470.77 -2.61 -32.73 16 11 C 0.58 24.67 7.74 86.46 0.67 25.34 16 12 O -0.53 -25.79 13.13 -4.32 -0.06 -25.84 16 13 C -0.07 -2.42 7.15 24.05 0.17 -2.25 16 14 O -0.18 -5.25 10.57 -6.96 -0.07 -5.32 16 15 C 0.26 6.55 7.87 88.29 0.69 7.25 16 16 C -0.11 -1.58 6.33 -11.54 -0.07 -1.65 16 17 C -0.14 -1.37 10.24 30.60 0.31 -1.05 16 18 C -0.13 -1.44 10.13 30.60 0.31 -1.13 16 19 N -0.48 -13.64 10.75 -291.06 -3.13 -16.76 16 20 C -0.01 -0.48 6.78 41.84 0.28 -0.20 16 21 C 0.35 10.63 5.63 71.24 0.40 11.04 16 22 F -0.19 -5.81 17.29 44.97 0.78 -5.03 16 23 F -0.18 -6.93 13.49 44.97 0.61 -6.32 16 24 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 25 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 26 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 27 H 0.41 15.55 8.12 -92.71 -0.75 14.80 16 28 H 0.16 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.10 1.41 7.87 -2.39 -0.02 1.39 16 32 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.17 3.72 8.14 -2.39 -0.02 3.70 16 Total: -1.00 -70.55 305.81 2.18 -68.37 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.42 Total: 11.28 kcal Atomic # 6 Polarization: 19.22 SS G_CDS: 3.93 Total: 23.16 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -5.45 Total: -103.97 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.13 Total: -31.16 kcal Atomic # 9 Polarization: -12.74 SS G_CDS: 1.38 Total: -11.35 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -70.55 2.18 -68.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349759469.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.845 kcal (2) G-P(sol) polarization free energy of solvation -70.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds