Wall clock time and date at job start Tue Mar 31 2020 05:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00067 * 2 1 4 4 H 1.48500 * 109.47316 * 270.00374 * 3 2 1 5 5 H 1.48500 * 109.47188 * 30.00223 * 3 2 1 6 6 H 1.48502 * 109.47005 * 149.99999 * 3 2 1 7 7 C 1.37886 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99943 * 181.96488 * 7 2 1 9 9 C 1.50701 * 119.99775 * 1.96725 * 7 2 1 10 10 C 1.53002 * 115.54954 * 84.65552 * 9 7 2 11 11 N 1.46494 * 109.47263 * 57.83436 * 10 9 7 12 12 C 1.34776 * 120.00317 * 185.19465 * 11 10 9 13 13 O 1.21346 * 119.99834 * 5.59260 * 12 11 10 14 14 C 1.49447 * 119.99952 * 185.59471 * 12 11 10 15 15 O 1.21341 * 120.00515 * 354.48539 * 14 12 11 16 16 N 1.34781 * 119.99865 * 174.48900 * 14 12 11 17 17 C 1.46498 * 120.00191 * 179.72319 * 16 14 12 18 18 C 1.50699 * 109.47350 * 180.27448 * 17 16 14 19 19 C 1.31160 * 120.00158 * 124.99903 * 18 17 16 20 20 Cl 1.73601 * 119.99940 * 0.02562 * 19 18 17 21 21 C 1.52994 * 117.49835 * 230.32533 * 9 7 2 22 22 C 1.53006 * 117.49919 * 298.98632 * 9 7 2 23 23 H 0.96993 * 120.00073 * 5.01156 * 1 2 3 24 24 H 1.08998 * 109.47031 * 297.83376 * 10 9 7 25 25 H 1.08995 * 109.46852 * 177.83814 * 10 9 7 26 26 H 0.97002 * 120.00047 * 5.19830 * 11 10 9 27 27 H 0.97002 * 119.99603 * 359.97438 * 16 14 12 28 28 H 1.08994 * 109.47338 * 300.27725 * 17 16 14 29 29 H 1.09004 * 109.46968 * 60.27462 * 17 16 14 30 30 H 1.08006 * 119.99673 * 305.00390 * 18 17 16 31 31 H 1.08005 * 120.00001 * 180.02562 * 19 18 17 32 32 H 1.08997 * 117.49979 * 215.00646 * 21 9 7 33 33 H 1.09009 * 117.49838 * 0.02562 * 21 9 7 34 34 H 1.08996 * 117.49600 * 359.97438 * 22 9 7 35 35 H 1.08993 * 117.50048 * 144.97480 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0841 -1.1944 0.0315 9 6 1.2517 -2.4988 -0.0459 10 6 0.8516 -2.9816 -1.4416 11 7 2.0502 -3.1213 -2.2722 12 6 1.9326 -3.4352 -3.5776 13 8 0.8342 -3.5023 -4.0889 14 6 3.1550 -3.7006 -4.3954 15 8 4.2558 -3.5364 -3.9121 16 7 3.0347 -4.1222 -5.6699 17 6 4.2330 -4.3766 -6.4735 18 6 3.8264 -4.8282 -7.8525 19 6 4.2714 -4.1910 -8.9090 20 17 5.3292 -2.8277 -8.7188 21 6 1.6179 -3.5621 0.9914 22 6 0.2941 -2.8024 1.1081 23 1 -0.4850 0.8368 -0.0734 24 1 0.1765 -2.2571 -1.8969 25 1 0.3499 -3.9459 -1.3624 26 1 2.9285 -2.9881 -1.8827 27 1 2.1547 -4.2538 -6.0561 28 1 4.8206 -3.4617 -6.5493 29 1 4.8309 -5.1541 -5.9981 30 1 3.1686 -5.6766 -7.9708 31 1 3.9797 -4.5144 -9.8974 32 1 1.5738 -4.6056 0.6796 33 1 2.4031 -3.3178 1.7070 34 1 0.2090 -2.0586 1.9003 35 1 -0.6211 -3.3457 0.8731 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354777115.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:33 Heat of formation + Delta-G solvation = -37.080920 kcal Electronic energy + Delta-G solvation = -19801.903192 eV Core-core repulsion = 16441.214958 eV Total energy + Delta-G solvation = -3360.688235 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.25272 -38.29959 -37.29487 -36.71700 -35.66502 -33.52267 -32.59387 -31.97496 -27.63489 -26.40141 -25.33660 -22.86488 -21.17163 -20.83144 -19.80419 -19.45261 -18.08034 -16.97191 -16.32801 -16.08071 -15.71080 -14.99456 -14.90410 -14.61860 -14.33406 -13.94689 -13.77484 -13.08399 -12.95654 -12.73229 -12.42955 -12.22580 -11.90794 -11.61430 -11.33576 -10.99725 -10.98465 -10.92039 -10.52624 -10.26160 -9.78302 -9.61790 -9.23544 -9.16270 -9.07141 -8.52728 -8.42459 -8.12537 -6.09190 -4.18166 1.28519 1.79053 1.92066 2.77953 3.28379 3.35577 3.38269 3.60634 4.08261 4.23016 4.37103 4.77193 4.92690 5.17062 5.19979 5.31546 5.33872 5.65534 5.79228 5.96172 6.18500 6.26630 6.39620 6.44847 6.66834 6.75120 7.00253 7.07454 7.20177 7.33935 7.48247 7.81206 7.84635 8.15116 8.30916 8.54738 8.84013 9.49886 10.98886 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.019698 B = 0.003668 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.146057 B = 7632.332978 C = 8476.643571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.075 3.925 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.500 4.500 8 H 0.062 0.938 9 C 0.022 3.978 10 C 0.159 3.841 11 N -0.663 5.663 12 C 0.496 3.504 13 O -0.540 6.540 14 C 0.509 3.491 15 O -0.517 6.517 16 N -0.704 5.704 17 C 0.134 3.866 18 C -0.162 4.162 19 C -0.088 4.088 20 Cl -0.084 7.084 21 C -0.211 4.211 22 C -0.141 4.141 23 H 0.262 0.738 24 H 0.078 0.922 25 H 0.043 0.957 26 H 0.414 0.586 27 H 0.413 0.587 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.144 0.856 31 H 0.154 0.846 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.187 -9.921 -15.120 19.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.537 4.537 8 H 0.080 0.920 9 C 0.021 3.979 10 C 0.036 3.964 11 N -0.313 5.313 12 C 0.276 3.724 13 O -0.419 6.419 14 C 0.290 3.710 15 O -0.392 6.392 16 N -0.359 5.359 17 C 0.011 3.989 18 C -0.181 4.181 19 C -0.133 4.133 20 Cl -0.056 7.056 21 C -0.248 4.248 22 C -0.180 4.180 23 H 0.071 0.929 24 H 0.096 0.904 25 H 0.061 0.939 26 H 0.250 0.750 27 H 0.249 0.751 28 H 0.107 0.893 29 H 0.104 0.896 30 H 0.162 0.838 31 H 0.172 0.828 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.129 -9.608 -14.990 18.830 hybrid contribution 0.385 0.978 -0.138 1.060 sum 6.514 -8.630 -15.128 18.595 Atomic orbital electron populations 1.69984 1.05843 1.26997 1.48305 1.24973 0.94829 0.98984 0.94170 0.86631 0.79968 0.83466 0.78258 1.20584 1.21196 1.19719 1.20376 0.92453 0.88475 1.52439 0.92020 1.19025 0.99513 0.93708 0.85611 1.21170 0.85106 0.98596 0.91481 1.45822 1.12848 1.64861 1.07740 1.19858 0.88617 0.80176 0.83790 1.90712 1.27187 1.52670 1.71339 1.20521 0.90148 0.77753 0.82556 1.90756 1.27467 1.49772 1.71203 1.45653 1.10442 1.67728 1.12073 1.20631 0.87931 1.02728 0.87648 1.23248 1.00777 1.00258 0.93815 1.24651 0.96821 0.91041 1.00768 1.98395 1.65016 1.44601 1.97566 1.23067 1.00151 0.95553 1.06036 1.22476 0.91121 1.01307 1.03056 0.92862 0.90358 0.93909 0.74981 0.75095 0.89317 0.89631 0.83812 0.82818 0.91593 0.90210 0.89481 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.17 12.72 55.43 0.71 -23.47 16 2 C 0.07 1.99 5.43 -17.82 -0.10 1.89 16 3 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.50 -12.98 8.38 -34.44 -0.29 -13.27 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.02 0.52 1.51 -155.66 -0.23 0.28 16 10 C 0.16 3.52 5.57 -4.04 -0.02 3.49 16 11 N -0.66 -13.39 5.37 -60.74 -0.33 -13.72 16 12 C 0.50 9.41 7.88 -11.59 -0.09 9.31 16 13 O -0.54 -11.06 16.46 5.50 0.09 -10.97 16 14 C 0.51 8.39 7.89 -11.58 -0.09 8.30 16 15 O -0.52 -9.57 16.49 5.50 0.09 -9.48 16 16 N -0.70 -8.80 5.54 -61.91 -0.34 -9.14 16 17 C 0.13 1.36 5.97 -5.20 -0.03 1.33 16 18 C -0.16 -1.11 9.64 -36.07 -0.35 -1.46 16 19 C -0.09 -0.58 10.82 28.97 0.31 -0.27 16 20 Cl -0.08 -0.77 26.97 -51.86 -1.40 -2.17 16 21 C -0.21 -4.36 9.94 -26.69 -0.27 -4.62 16 22 C -0.14 -3.18 9.26 -26.69 -0.25 -3.43 16 23 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 24 H 0.08 1.96 8.09 -51.93 -0.42 1.54 16 25 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 26 H 0.41 8.27 7.73 -40.82 -0.32 7.96 16 27 H 0.41 4.59 7.95 -40.82 -0.32 4.26 16 28 H 0.09 1.03 6.01 -51.93 -0.31 0.72 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 31 H 0.15 0.60 8.06 -52.48 -0.42 0.18 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.08 1.64 8.14 -51.92 -0.42 1.21 16 34 H 0.09 2.11 8.14 -51.93 -0.42 1.68 16 35 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 327.52 15.07 4.94 4.94 Total: -1.00 -29.80 327.52 -6.97 -36.77 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -4.30 Total: 9.77 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -1.40 Total: 1.56 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.04 Total: -46.33 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: 0.18 Total: -20.45 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.40 Total: -2.17 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.80 -6.97 -36.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354777115.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.313 kcal (2) G-P(sol) polarization free energy of solvation -29.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds