Wall clock time and date at job start Tue Mar 31 2020 05:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00067 * 2 1 4 4 H 1.48500 * 109.47316 * 270.00374 * 3 2 1 5 5 H 1.48500 * 109.47188 * 30.00223 * 3 2 1 6 6 H 1.48502 * 109.47005 * 149.99999 * 3 2 1 7 7 C 1.37886 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99943 * 181.96488 * 7 2 1 9 9 C 1.50701 * 119.99775 * 1.96725 * 7 2 1 10 10 C 1.53002 * 115.54954 * 84.65552 * 9 7 2 11 11 N 1.46494 * 109.47263 * 57.83436 * 10 9 7 12 12 C 1.34776 * 120.00317 * 185.19465 * 11 10 9 13 13 O 1.21346 * 119.99834 * 5.59260 * 12 11 10 14 14 C 1.49447 * 119.99952 * 185.59471 * 12 11 10 15 15 O 1.21341 * 120.00515 * 354.48539 * 14 12 11 16 16 N 1.34781 * 119.99865 * 174.48900 * 14 12 11 17 17 C 1.46498 * 120.00191 * 179.72319 * 16 14 12 18 18 C 1.50699 * 109.47350 * 180.27448 * 17 16 14 19 19 C 1.31160 * 120.00158 * 124.99903 * 18 17 16 20 20 Cl 1.73601 * 119.99940 * 0.02562 * 19 18 17 21 21 C 1.52994 * 117.49835 * 230.32533 * 9 7 2 22 22 C 1.53006 * 117.49919 * 298.98632 * 9 7 2 23 23 H 0.96993 * 120.00073 * 5.01156 * 1 2 3 24 24 H 1.08998 * 109.47031 * 297.83376 * 10 9 7 25 25 H 1.08995 * 109.46852 * 177.83814 * 10 9 7 26 26 H 0.97002 * 120.00047 * 5.19830 * 11 10 9 27 27 H 0.97002 * 119.99603 * 359.97438 * 16 14 12 28 28 H 1.08994 * 109.47338 * 300.27725 * 17 16 14 29 29 H 1.09004 * 109.46968 * 60.27462 * 17 16 14 30 30 H 1.08006 * 119.99673 * 305.00390 * 18 17 16 31 31 H 1.08005 * 120.00001 * 180.02562 * 19 18 17 32 32 H 1.08997 * 117.49979 * 215.00646 * 21 9 7 33 33 H 1.09009 * 117.49838 * 0.02562 * 21 9 7 34 34 H 1.08996 * 117.49600 * 359.97438 * 22 9 7 35 35 H 1.08993 * 117.50048 * 144.97480 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0841 -1.1944 0.0315 9 6 1.2517 -2.4988 -0.0459 10 6 0.8516 -2.9816 -1.4416 11 7 2.0502 -3.1213 -2.2722 12 6 1.9326 -3.4352 -3.5776 13 8 0.8342 -3.5023 -4.0889 14 6 3.1550 -3.7006 -4.3954 15 8 4.2558 -3.5364 -3.9121 16 7 3.0347 -4.1222 -5.6699 17 6 4.2330 -4.3766 -6.4735 18 6 3.8264 -4.8282 -7.8525 19 6 4.2714 -4.1910 -8.9090 20 17 5.3292 -2.8277 -8.7188 21 6 1.6179 -3.5621 0.9914 22 6 0.2941 -2.8024 1.1081 23 1 -0.4850 0.8368 -0.0734 24 1 0.1765 -2.2571 -1.8969 25 1 0.3499 -3.9459 -1.3624 26 1 2.9285 -2.9881 -1.8827 27 1 2.1547 -4.2538 -6.0561 28 1 4.8206 -3.4617 -6.5493 29 1 4.8309 -5.1541 -5.9981 30 1 3.1686 -5.6766 -7.9708 31 1 3.9797 -4.5144 -9.8974 32 1 1.5738 -4.6056 0.6796 33 1 2.4031 -3.3178 1.7070 34 1 0.2090 -2.0586 1.9003 35 1 -0.6211 -3.3457 0.8731 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354777115.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:32 Heat of formation + Delta-G solvation = -57.746615 kcal Electronic energy + Delta-G solvation = -19802.799324 eV Core-core repulsion = 16441.214958 eV Total energy + Delta-G solvation = -3361.584367 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.64379 -39.73765 -38.45917 -38.00506 -36.62558 -35.04930 -33.97833 -33.50379 -29.01626 -27.80482 -27.13671 -24.21451 -22.90343 -21.67706 -21.40167 -20.85759 -19.47781 -18.17360 -17.82699 -17.38941 -17.00881 -16.66826 -16.36404 -16.07992 -15.58819 -15.39765 -14.94548 -14.64418 -14.43390 -13.87505 -13.65751 -13.47833 -13.19688 -12.94234 -12.85766 -12.83731 -12.77582 -12.37977 -12.00841 -11.66827 -11.43714 -10.98916 -10.81534 -10.45533 -10.42492 -10.17798 -10.08593 -9.87647 -8.12208 -6.24642 0.37647 0.68084 1.36745 1.39901 1.42996 1.50473 1.53971 2.16830 2.41318 2.78465 3.16883 3.44521 3.60484 3.63760 4.15518 4.21765 4.47640 4.51795 4.64429 4.66168 4.67822 4.94042 5.01046 5.03490 5.09348 5.28129 5.29469 5.36700 5.54972 5.68274 5.76322 5.98279 6.35353 6.46442 6.77452 6.82540 7.01068 7.45188 8.95320 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.019698 B = 0.003668 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.146057 B = 7632.332978 C = 8476.643571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.030 3.970 3 Si 0.942 3.058 4 H -0.283 1.283 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.506 4.506 8 H 0.057 0.943 9 C -0.003 4.003 10 C 0.174 3.826 11 N -0.667 5.667 12 C 0.496 3.504 13 O -0.557 6.557 14 C 0.514 3.486 15 O -0.541 6.541 16 N -0.683 5.683 17 C 0.128 3.872 18 C -0.161 4.161 19 C -0.081 4.081 20 Cl -0.112 7.112 21 C -0.181 4.181 22 C -0.148 4.148 23 H 0.259 0.741 24 H 0.042 0.958 25 H 0.058 0.942 26 H 0.415 0.585 27 H 0.421 0.579 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.175 0.825 31 H 0.187 0.813 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.800 -11.297 -16.401 21.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.171 4.171 3 Si 0.769 3.231 4 H -0.209 1.209 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.544 4.544 8 H 0.075 0.925 9 C -0.004 4.004 10 C 0.050 3.950 11 N -0.317 5.317 12 C 0.276 3.724 13 O -0.436 6.436 14 C 0.294 3.706 15 O -0.418 6.418 16 N -0.337 5.337 17 C 0.006 3.994 18 C -0.180 4.180 19 C -0.125 4.125 20 Cl -0.084 7.084 21 C -0.218 4.218 22 C -0.186 4.186 23 H 0.069 0.931 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.251 0.749 27 H 0.259 0.741 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.192 0.808 31 H 0.204 0.796 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.750 -11.002 -16.304 20.795 hybrid contribution 0.192 1.348 0.203 1.377 sum 6.942 -9.654 -16.101 20.016 Atomic orbital electron populations 1.70080 1.06882 1.27350 1.49707 1.25602 0.95490 1.01679 0.94363 0.85797 0.79087 0.80372 0.77878 1.20912 1.21099 1.19104 1.20653 0.92460 0.89853 1.51416 0.92490 1.19073 1.00592 0.94077 0.86665 1.20826 0.85259 0.98140 0.90759 1.45763 1.12210 1.65419 1.08301 1.20308 0.89389 0.79172 0.83485 1.90697 1.28186 1.53191 1.71570 1.20016 0.88626 0.78397 0.83547 1.90752 1.27695 1.51441 1.71945 1.45633 1.11901 1.65490 1.10676 1.20797 0.86871 1.02425 0.89303 1.23297 1.01713 1.01359 0.91658 1.25131 0.95582 0.89526 1.02273 1.98399 1.66048 1.46276 1.97677 1.23063 0.98607 0.96205 1.03923 1.22398 0.92558 1.01552 1.02079 0.93142 0.93984 0.92394 0.74869 0.74081 0.90701 0.89175 0.80788 0.79554 0.88818 0.90030 0.91813 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.67 12.72 21.45 0.27 -50.39 16 2 C 0.03 1.59 5.43 84.66 0.46 2.05 16 3 Si 0.94 43.27 29.54 68.60 2.03 45.30 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.51 -26.35 8.38 25.60 0.21 -26.14 16 8 H 0.06 2.95 7.81 -2.91 -0.02 2.93 16 9 C 0.00 -0.16 1.51 -52.93 -0.08 -0.24 16 10 C 0.17 7.65 5.57 86.38 0.48 8.13 16 11 N -0.67 -26.75 5.37 -464.44 -2.49 -29.25 16 12 C 0.50 18.53 7.88 87.27 0.69 19.22 16 13 O -0.56 -22.48 16.46 -3.23 -0.05 -22.53 16 14 C 0.51 16.45 7.89 87.27 0.69 17.14 16 15 O -0.54 -19.68 16.49 -3.22 -0.05 -19.73 16 16 N -0.68 -15.92 5.54 -468.16 -2.59 -18.51 16 17 C 0.13 2.38 5.97 85.63 0.51 2.89 16 18 C -0.16 -1.73 9.64 25.49 0.25 -1.48 16 19 C -0.08 -0.83 10.82 67.62 0.73 -0.10 16 20 Cl -0.11 -1.91 26.97 -2.72 -0.07 -1.98 16 21 C -0.18 -7.16 9.94 30.62 0.30 -6.85 16 22 C -0.15 -6.58 9.26 30.62 0.28 -6.29 16 23 H 0.26 14.08 8.32 -92.71 -0.77 13.31 16 24 H 0.04 2.15 8.09 -2.39 -0.02 2.13 16 25 H 0.06 2.35 8.11 -2.39 -0.02 2.33 16 26 H 0.41 16.47 7.73 -92.71 -0.72 15.76 16 27 H 0.42 8.46 7.95 -92.71 -0.74 7.73 16 28 H 0.07 1.66 6.01 -2.39 -0.01 1.65 16 29 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.18 0.86 8.06 -2.91 -0.02 0.84 16 31 H 0.19 0.72 8.06 -2.91 -0.02 0.69 16 32 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 33 H 0.08 3.20 8.14 -2.38 -0.02 3.18 16 34 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 35 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -64.16 327.52 1.24 -62.93 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: -0.32 Total: 25.85 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 4.53 Total: 8.33 kcal Atomic # 7 Polarization: -93.34 SS G_CDS: -4.81 Total: -98.15 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: -0.11 Total: -42.27 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.07 Total: -1.98 kcal Total: -64.16 1.24 -62.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354777115.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.179 kcal (2) G-P(sol) polarization free energy of solvation -64.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds