Wall clock time and date at job start Tue Mar 31 2020 06:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35166 * 126.43483 * 2 1 4 4 O 1.33917 * 108.77916 * 179.73375 * 3 2 1 5 5 C 1.34936 * 109.38020 * 0.40508 * 4 3 2 6 6 C 1.46470 * 125.99420 * 179.85642 * 5 4 3 7 7 O 1.21625 * 119.99862 * 179.69172 * 6 5 4 8 8 O 1.34897 * 119.99914 * 359.69766 * 6 5 4 9 9 C 1.45203 * 116.99987 * 179.97438 * 8 6 5 10 10 C 1.50697 * 109.47319 * 179.97438 * 9 8 6 11 11 C 1.38633 * 119.74949 * 269.72858 * 10 9 8 12 12 C 1.37617 * 120.24944 * 179.72576 * 11 10 9 13 13 C 1.40718 * 119.74164 * 0.56005 * 12 11 10 14 14 C 1.41401 * 120.24393 * 179.68489 * 13 12 11 15 15 H 1.07999 * 119.99852 * 204.41479 * 14 13 12 16 16 C 1.39940 * 119.99711 * 24.41047 * 14 13 12 17 17 N 1.30825 * 120.00049 * 17.84943 * 16 14 13 18 18 Si 1.86804 * 119.99952 * 197.84493 * 16 14 13 19 19 H 1.48502 * 109.46772 * 60.00290 * 18 16 14 20 20 H 1.48499 * 109.47160 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46944 * 300.00457 * 18 16 14 22 22 C 1.40710 * 119.51303 * 359.71722 * 13 12 11 23 23 C 1.37618 * 119.74430 * 359.97438 * 22 13 12 24 24 C 1.36636 * 108.00628 * 359.60183 * 5 4 3 25 25 H 1.09003 * 109.46634 * 270.02293 * 1 2 3 26 26 H 1.09001 * 109.47225 * 30.01923 * 1 2 3 27 27 H 1.08998 * 109.46991 * 150.02777 * 1 2 3 28 28 H 1.07997 * 125.61313 * 359.94626 * 3 2 1 29 29 H 1.09005 * 109.47424 * 59.99309 * 9 8 6 30 30 H 1.09004 * 109.46948 * 299.99798 * 9 8 6 31 31 H 1.08007 * 119.87369 * 359.96917 * 11 10 9 32 32 H 1.07997 * 120.13095 * 180.27639 * 12 11 10 33 33 H 0.97006 * 119.99615 * 179.97438 * 17 16 14 34 34 H 1.08003 * 120.13315 * 179.97438 * 22 13 12 35 35 H 1.08005 * 119.87795 * 180.02562 * 23 22 13 36 36 H 1.08004 * 126.64705 * 180.22360 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0875 0.0000 4 8 3.5859 0.6813 0.0059 5 6 3.6265 -0.6674 0.0008 6 6 4.8370 -1.4922 0.0016 7 8 4.7464 -2.7051 0.0023 8 8 6.0522 -0.9065 0.0019 9 6 7.2077 -1.7858 0.0033 10 6 8.4678 -0.9593 0.0027 11 6 9.0466 -0.5883 -1.2011 12 6 10.1942 0.1711 -1.2137 13 6 10.7867 0.5610 0.0017 14 6 11.9696 1.3357 0.0011 15 1 12.6328 1.3092 0.8531 16 6 12.2809 2.1365 -1.1034 17 7 11.3499 2.4497 -1.9675 18 14 14.0259 2.7585 -1.3439 19 1 14.9507 1.6031 -1.4665 20 1 14.0928 3.5799 -2.5792 21 1 14.4212 3.5874 -0.1769 22 6 10.1937 0.1737 1.2175 23 6 9.0425 -0.5803 1.2061 24 6 2.3404 -1.1288 0.0004 25 1 -0.3633 0.0004 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5134 28 1 1.9769 2.1148 -0.0008 29 1 7.1862 -2.4156 -0.8861 30 1 7.1852 -2.4139 0.8939 31 1 8.5929 -0.8931 -2.1327 32 1 10.6410 0.4628 -2.1527 33 1 11.5657 3.0052 -2.7330 34 1 10.6401 0.4671 2.1562 35 1 8.5853 -0.8784 2.1380 36 1 2.0262 -2.1621 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520641641.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:46 Heat of formation + Delta-G solvation = -60.202614 kcal Electronic energy + Delta-G solvation = -20779.795619 eV Core-core repulsion = 17388.244851 eV Total energy + Delta-G solvation = -3391.550768 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.83531 -39.89273 -37.67968 -36.14811 -34.39921 -33.86614 -31.13260 -30.55283 -29.36893 -27.79966 -27.07508 -24.53263 -23.20749 -21.27987 -21.08980 -20.16789 -20.02983 -17.90701 -17.39346 -16.92981 -16.66926 -16.12363 -15.63053 -15.31105 -14.41726 -13.89755 -13.76901 -13.72891 -13.42895 -13.28066 -12.94113 -12.76982 -12.42817 -12.39959 -12.02687 -11.97442 -11.73908 -11.17780 -11.01383 -10.94565 -10.60263 -10.45307 -10.20910 -9.91194 -9.72173 -9.46984 -9.22474 -8.80639 -7.56579 -7.45691 -6.86750 -4.46857 0.84193 2.07773 2.28064 2.68710 2.95885 3.00057 3.00890 3.02623 3.06121 3.41735 3.85377 4.48054 4.53125 4.66367 4.80148 5.14357 5.33258 5.39702 5.55745 5.59574 5.64050 5.65964 5.69856 5.73956 6.04533 6.17279 6.24874 6.31389 6.65389 6.74395 6.87263 6.97200 7.18191 7.26459 7.51571 7.73092 7.91262 7.95374 8.00881 8.19059 8.53547 8.78147 8.86605 10.06883 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.028390 B = 0.003016 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.035838 B = 9281.136420 C = 9839.930914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.202 4.202 3 C 0.000 4.000 4 O -0.143 6.143 5 C -0.052 4.052 6 C 0.543 3.457 7 O -0.499 6.499 8 O -0.337 6.337 9 C 0.135 3.865 10 C -0.238 4.238 11 C -0.074 4.074 12 C -0.171 4.171 13 C 0.119 3.881 14 C -0.456 4.456 15 H 0.080 0.920 16 C 0.075 3.925 17 N -0.784 5.784 18 Si 0.911 3.089 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.264 1.264 22 C -0.230 4.230 23 C -0.062 4.062 24 C -0.115 4.115 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.211 0.789 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.120 0.880 33 H 0.284 0.716 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.325 -1.832 1.292 15.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.203 4.203 3 C -0.071 4.071 4 O -0.036 6.036 5 C -0.103 4.103 6 C 0.388 3.612 7 O -0.391 6.391 8 O -0.253 6.253 9 C 0.064 3.936 10 C -0.239 4.239 11 C -0.093 4.093 12 C -0.190 4.190 13 C 0.116 3.884 14 C -0.484 4.484 15 H 0.098 0.902 16 C -0.144 4.144 17 N -0.408 5.408 18 Si 0.735 3.265 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.189 1.189 22 C -0.250 4.250 23 C -0.080 4.080 24 C -0.134 4.134 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.228 0.772 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.138 0.862 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -15.048 -1.865 1.074 15.201 hybrid contribution 0.574 0.295 -0.173 0.668 sum -14.475 -1.570 0.901 14.587 Atomic orbital electron populations 1.20167 0.88447 1.02877 1.02328 1.20467 0.97779 0.92219 1.09816 1.24357 0.80057 1.00249 1.02407 1.84230 1.28814 1.21311 1.69286 1.21016 0.93763 0.80859 1.14655 1.19319 0.83061 0.85360 0.73460 1.90901 1.87469 1.13433 1.47262 1.86920 1.13914 1.42376 1.82100 1.21857 0.80101 0.90450 1.01208 1.18651 0.97548 1.13520 0.94207 1.20546 0.96235 0.97415 0.95075 1.21293 0.97746 1.01150 0.98837 1.17688 0.91211 0.88504 0.90959 1.19655 1.05378 1.21518 1.01894 0.90162 1.25981 0.98942 0.94765 0.94752 1.69827 1.33710 1.26673 1.10638 0.86318 0.82231 0.79369 0.78572 1.18680 1.20224 1.18880 1.20960 0.98954 1.07948 0.97137 1.20399 0.95664 0.96781 0.95195 1.21831 0.90005 1.00742 1.00856 0.91262 0.91378 0.91288 0.77224 0.91654 0.91713 0.89266 0.86199 0.90546 0.88673 0.89246 0.82032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.39 36.01 0.37 -0.16 16 2 C -0.20 -2.04 6.14 -104.94 -0.64 -2.68 16 3 C 0.00 0.00 12.00 29.64 0.36 0.35 16 4 O -0.14 -2.10 10.67 4.73 0.05 -2.05 16 5 C -0.05 -0.80 7.18 -36.85 -0.26 -1.07 16 6 C 0.54 9.70 7.93 34.05 0.27 9.97 16 7 O -0.50 -9.35 16.66 -19.36 -0.32 -9.67 16 8 O -0.34 -6.72 10.22 -42.48 -0.43 -7.16 16 9 C 0.14 2.64 5.59 36.00 0.20 2.85 16 10 C -0.24 -5.35 5.54 -104.33 -0.58 -5.93 16 11 C -0.07 -1.75 9.67 -39.66 -0.38 -2.14 16 12 C -0.17 -4.42 8.70 -38.87 -0.34 -4.76 16 13 C 0.12 3.15 5.57 -106.82 -0.60 2.55 16 14 C -0.46 -11.86 9.05 -37.74 -0.34 -12.20 16 15 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 16 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 17 N -0.78 -19.93 10.95 55.55 0.61 -19.32 16 18 Si 0.91 18.18 29.60 -169.99 -5.03 13.15 16 19 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 20 H -0.28 -5.39 7.11 56.52 0.40 -4.98 16 21 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 22 C -0.23 -5.64 9.80 -38.88 -0.38 -6.02 16 23 C -0.06 -1.41 9.67 -39.66 -0.38 -1.79 16 24 C -0.11 -1.43 10.57 -39.38 -0.42 -1.84 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.21 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 30 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 31 H 0.09 1.92 8.06 -52.48 -0.42 1.49 16 32 H 0.12 3.17 6.16 -52.49 -0.32 2.85 16 33 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 34 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 35 H 0.09 1.80 8.06 -52.48 -0.42 1.37 16 36 H 0.16 1.76 8.06 -52.48 -0.42 1.34 16 LS Contribution 325.59 15.07 4.91 4.91 Total: -1.00 -29.48 325.59 -7.53 -37.01 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -4.09 Total: 4.26 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -3.21 Total: -21.13 kcal Atomic # 7 Polarization: -19.93 SS G_CDS: 0.61 Total: -19.32 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.71 Total: -18.88 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.48 -7.53 -37.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520641641.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.190 kcal (2) G-P(sol) polarization free energy of solvation -29.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds