Wall clock time and date at job start Tue Mar 31 2020 06:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35166 * 126.43483 * 2 1 4 4 O 1.33917 * 108.77916 * 179.73375 * 3 2 1 5 5 C 1.34936 * 109.38020 * 0.40508 * 4 3 2 6 6 C 1.46470 * 125.99420 * 179.85642 * 5 4 3 7 7 O 1.21625 * 119.99862 * 179.69172 * 6 5 4 8 8 O 1.34897 * 119.99914 * 359.69766 * 6 5 4 9 9 C 1.45203 * 116.99987 * 179.97438 * 8 6 5 10 10 C 1.50697 * 109.47319 * 179.97438 * 9 8 6 11 11 C 1.38633 * 119.74949 * 269.72858 * 10 9 8 12 12 C 1.37617 * 120.24944 * 179.72576 * 11 10 9 13 13 C 1.40718 * 119.74164 * 0.56005 * 12 11 10 14 14 C 1.41401 * 120.24393 * 179.68489 * 13 12 11 15 15 H 1.07999 * 119.99852 * 204.41479 * 14 13 12 16 16 C 1.39940 * 119.99711 * 24.41047 * 14 13 12 17 17 N 1.30825 * 120.00049 * 17.84943 * 16 14 13 18 18 Si 1.86804 * 119.99952 * 197.84493 * 16 14 13 19 19 H 1.48502 * 109.46772 * 60.00290 * 18 16 14 20 20 H 1.48499 * 109.47160 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46944 * 300.00457 * 18 16 14 22 22 C 1.40710 * 119.51303 * 359.71722 * 13 12 11 23 23 C 1.37618 * 119.74430 * 359.97438 * 22 13 12 24 24 C 1.36636 * 108.00628 * 359.60183 * 5 4 3 25 25 H 1.09003 * 109.46634 * 270.02293 * 1 2 3 26 26 H 1.09001 * 109.47225 * 30.01923 * 1 2 3 27 27 H 1.08998 * 109.46991 * 150.02777 * 1 2 3 28 28 H 1.07997 * 125.61313 * 359.94626 * 3 2 1 29 29 H 1.09005 * 109.47424 * 59.99309 * 9 8 6 30 30 H 1.09004 * 109.46948 * 299.99798 * 9 8 6 31 31 H 1.08007 * 119.87369 * 359.96917 * 11 10 9 32 32 H 1.07997 * 120.13095 * 180.27639 * 12 11 10 33 33 H 0.97006 * 119.99615 * 179.97438 * 17 16 14 34 34 H 1.08003 * 120.13315 * 179.97438 * 22 13 12 35 35 H 1.08005 * 119.87795 * 180.02562 * 23 22 13 36 36 H 1.08004 * 126.64705 * 180.22360 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0875 0.0000 4 8 3.5859 0.6813 0.0059 5 6 3.6265 -0.6674 0.0008 6 6 4.8370 -1.4922 0.0016 7 8 4.7464 -2.7051 0.0023 8 8 6.0522 -0.9065 0.0019 9 6 7.2077 -1.7858 0.0033 10 6 8.4678 -0.9593 0.0027 11 6 9.0466 -0.5883 -1.2011 12 6 10.1942 0.1711 -1.2137 13 6 10.7867 0.5610 0.0017 14 6 11.9696 1.3357 0.0011 15 1 12.6328 1.3092 0.8531 16 6 12.2809 2.1365 -1.1034 17 7 11.3499 2.4497 -1.9675 18 14 14.0259 2.7585 -1.3439 19 1 14.9507 1.6031 -1.4665 20 1 14.0928 3.5799 -2.5792 21 1 14.4212 3.5874 -0.1769 22 6 10.1937 0.1737 1.2175 23 6 9.0425 -0.5803 1.2061 24 6 2.3404 -1.1288 0.0004 25 1 -0.3633 0.0004 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5134 28 1 1.9769 2.1148 -0.0008 29 1 7.1862 -2.4156 -0.8861 30 1 7.1852 -2.4139 0.8939 31 1 8.5929 -0.8931 -2.1327 32 1 10.6410 0.4628 -2.1527 33 1 11.5657 3.0052 -2.7330 34 1 10.6401 0.4671 2.1562 35 1 8.5853 -0.8784 2.1380 36 1 2.0262 -2.1621 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520641641.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:45 Heat of formation + Delta-G solvation = -74.670988 kcal Electronic energy + Delta-G solvation = -20780.423015 eV Core-core repulsion = 17388.244851 eV Total energy + Delta-G solvation = -3392.178164 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.80478 -41.32185 -39.49910 -37.64746 -35.72218 -35.23023 -32.72816 -31.77048 -31.25361 -29.13713 -28.17126 -26.04090 -24.64367 -22.98156 -22.26400 -21.90256 -21.28152 -19.29116 -18.97783 -18.28609 -17.88476 -17.36925 -17.09644 -16.81786 -16.02692 -15.66365 -15.45644 -14.59045 -14.47948 -14.20350 -14.05413 -14.02951 -13.91742 -13.87517 -13.58326 -13.53993 -12.87865 -12.72532 -12.64462 -12.57905 -12.19952 -12.01735 -11.77891 -11.52723 -11.31761 -11.06139 -10.82094 -9.71074 -9.47020 -9.36651 -8.70430 -6.42010 -0.26354 0.66393 1.08617 1.20754 1.34575 1.39076 1.50438 1.58312 1.74552 2.10499 2.18921 2.70710 3.57404 3.72227 3.76442 3.95612 4.02559 4.07185 4.21979 4.42575 4.45442 4.51914 4.57885 4.82594 4.90803 4.97916 5.01147 5.07293 5.09718 5.22358 5.28460 5.37267 5.47719 5.62599 5.80144 5.85252 6.03073 6.11404 6.29219 6.53462 6.61672 6.86030 6.94621 8.26110 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.028390 B = 0.003016 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.035838 B = 9281.136420 C = 9839.930914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.205 4.205 3 C 0.014 3.986 4 O -0.171 6.171 5 C -0.101 4.101 6 C 0.544 3.456 7 O -0.517 6.517 8 O -0.356 6.356 9 C 0.139 3.861 10 C -0.234 4.234 11 C -0.080 4.080 12 C -0.195 4.195 13 C 0.088 3.912 14 C -0.492 4.492 15 H 0.082 0.918 16 C 0.034 3.966 17 N -0.818 5.818 18 Si 0.987 3.013 19 H -0.259 1.259 20 H -0.267 1.267 21 H -0.258 1.258 22 C -0.246 4.246 23 C -0.064 4.064 24 C -0.097 4.097 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.254 0.746 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.291 0.709 34 H 0.104 0.896 35 H 0.118 0.882 36 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.212 -1.350 1.536 17.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.206 4.206 3 C -0.056 4.056 4 O -0.066 6.066 5 C -0.150 4.150 6 C 0.391 3.609 7 O -0.410 6.410 8 O -0.273 6.273 9 C 0.067 3.933 10 C -0.236 4.236 11 C -0.098 4.098 12 C -0.214 4.214 13 C 0.086 3.914 14 C -0.520 4.520 15 H 0.100 0.900 16 C -0.182 4.182 17 N -0.443 5.443 18 Si 0.807 3.193 19 H -0.183 1.183 20 H -0.191 1.191 21 H -0.182 1.182 22 C -0.265 4.265 23 C -0.082 4.082 24 C -0.117 4.117 25 H 0.099 0.901 26 H 0.107 0.893 27 H 0.093 0.907 28 H 0.270 0.730 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.102 0.898 34 H 0.122 0.878 35 H 0.136 0.864 36 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -16.962 -1.398 1.326 17.071 hybrid contribution 0.887 0.133 -0.222 0.924 sum -16.075 -1.265 1.104 16.163 Atomic orbital electron populations 1.20285 0.85597 1.04238 1.03481 1.20906 0.99546 0.91036 1.09085 1.25357 0.78534 1.02284 0.99382 1.84200 1.31172 1.21034 1.70177 1.20769 0.93419 0.81449 1.19390 1.19615 0.82929 0.85619 0.72729 1.90871 1.87603 1.14051 1.48429 1.86859 1.14816 1.42789 1.82833 1.21741 0.79120 0.89872 1.02524 1.18973 0.98508 1.12420 0.93672 1.20788 0.95649 0.96882 0.96520 1.21275 0.99042 1.02772 0.98302 1.18055 0.92106 0.89428 0.91840 1.19927 1.06032 1.22889 1.03192 0.90023 1.26867 1.03118 0.94379 0.93848 1.69879 1.35814 1.27320 1.11261 0.85185 0.76422 0.78833 0.78899 1.18343 1.19097 1.18166 1.21181 0.99722 1.08599 0.97000 1.20723 0.94993 0.95935 0.96592 1.22189 0.89277 1.02131 0.98060 0.90116 0.89347 0.90700 0.73025 0.90689 0.90160 0.87591 0.87645 0.89803 0.87754 0.86409 0.80886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.39 71.24 0.74 0.00 16 2 C -0.20 -3.54 6.14 -20.07 -0.12 -3.66 16 3 C 0.01 0.25 12.00 67.11 0.81 1.05 16 4 O -0.17 -4.87 10.67 -4.92 -0.05 -4.92 16 5 C -0.10 -3.05 7.18 24.04 0.17 -2.88 16 6 C 0.54 19.45 7.93 69.97 0.55 20.01 16 7 O -0.52 -19.25 16.66 19.43 0.32 -18.93 16 8 O -0.36 -14.22 10.22 -56.74 -0.58 -14.80 16 9 C 0.14 5.36 5.59 71.23 0.40 5.76 16 10 C -0.23 -10.54 5.54 -19.68 -0.11 -10.65 16 11 C -0.08 -3.85 9.67 22.22 0.21 -3.64 16 12 C -0.19 -10.45 8.70 22.73 0.20 -10.25 16 13 C 0.09 4.83 5.57 -21.29 -0.12 4.71 16 14 C -0.49 -26.42 9.05 23.46 0.21 -26.21 16 15 H 0.08 4.18 7.91 -2.91 -0.02 4.15 16 16 C 0.03 1.70 5.14 85.26 0.44 2.14 16 17 N -0.82 -42.69 10.95 21.83 0.24 -42.45 16 18 Si 0.99 37.53 29.60 68.60 2.03 39.56 16 19 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 20 H -0.27 -9.57 7.11 99.48 0.71 -8.87 16 21 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 22 C -0.25 -12.25 9.80 22.73 0.22 -12.03 16 23 C -0.06 -2.91 9.67 22.22 0.21 -2.69 16 24 C -0.10 -2.25 10.57 22.40 0.24 -2.01 16 25 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.25 1.93 8.06 -2.91 -0.02 1.90 16 29 H 0.07 2.71 8.07 -2.38 -0.02 2.69 16 30 H 0.08 2.82 8.08 -2.39 -0.02 2.80 16 31 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 32 H 0.11 5.86 6.16 -2.91 -0.02 5.84 16 33 H 0.29 13.68 8.30 -92.70 -0.77 12.91 16 34 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 35 H 0.12 4.58 8.06 -2.91 -0.02 4.55 16 36 H 0.17 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -66.13 325.59 7.12 -59.01 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 1.10 Total: 22.87 kcal Atomic # 6 Polarization: -44.40 SS G_CDS: 4.06 Total: -40.34 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.24 Total: -42.45 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -0.31 Total: -38.65 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 2.03 Total: 39.56 kcal Total: -66.13 7.12 -59.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520641641.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.661 kcal (2) G-P(sol) polarization free energy of solvation -66.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds