Wall clock time and date at job start Tue Mar 31 2020 06:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.41381 * 126.58139 * 2 1 4 4 C 1.34511 * 106.84386 * 179.97438 * 3 2 1 5 5 O 1.34307 * 108.42067 * 0.02562 * 4 3 2 6 6 C 1.34309 * 109.47512 * 359.76949 * 5 4 3 7 7 C 1.50696 * 125.79364 * 180.23633 * 6 5 4 8 8 O 1.45197 * 109.47442 * 270.16815 * 7 6 5 9 9 C 1.34770 * 117.00279 * 179.97438 * 8 7 6 10 10 O 1.21509 * 119.99974 * 359.97438 * 9 8 7 11 11 C 1.47505 * 119.99907 * 179.97438 * 9 8 7 12 12 C 1.40068 * 119.90467 * 359.72530 * 11 9 8 13 13 C 1.36302 * 120.10253 * 179.72019 * 12 11 9 14 14 C 1.40899 * 119.89687 * 0.55062 * 13 12 11 15 15 C 1.41089 * 120.09958 * 179.70051 * 14 13 12 16 16 H 1.08000 * 119.99823 * 204.67340 * 15 14 13 17 17 C 1.40248 * 119.99877 * 24.66598 * 15 14 13 18 18 N 1.30628 * 119.99861 * 17.86985 * 17 15 14 19 19 Si 1.86802 * 119.99995 * 197.86966 * 17 15 14 20 20 H 1.48500 * 109.47130 * 60.00061 * 19 17 15 21 21 H 1.48501 * 109.47176 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46821 * 300.00040 * 19 17 15 23 23 C 1.40901 * 119.80173 * 359.72528 * 14 13 12 24 24 C 1.36295 * 119.89977 * 359.97438 * 23 14 13 25 25 H 1.08997 * 109.47611 * 90.01521 * 1 2 3 26 26 H 1.09005 * 109.46958 * 330.01290 * 1 2 3 27 27 H 1.08998 * 109.47272 * 210.02493 * 1 2 3 28 28 H 1.08000 * 126.57897 * 0.02562 * 3 2 1 29 29 H 1.07995 * 125.79274 * 180.02562 * 4 3 2 30 30 H 1.09004 * 109.46628 * 30.16231 * 7 6 5 31 31 H 1.08994 * 109.47324 * 150.16218 * 7 6 5 32 32 H 1.08003 * 119.94507 * 0.02562 * 12 11 9 33 33 H 1.07995 * 120.05185 * 180.27695 * 13 12 11 34 34 H 0.97006 * 119.99869 * 179.97438 * 18 17 15 35 35 H 1.08005 * 120.04904 * 179.97438 * 23 14 13 36 36 H 1.08005 * 119.94965 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1353 0.0000 4 6 3.6156 0.6810 0.0006 5 8 3.5848 -0.6617 0.0004 6 6 2.3086 -1.0802 0.0047 7 6 1.8520 -2.5164 0.0110 8 8 1.7062 -2.9839 -1.3558 9 6 1.3020 -4.2582 -1.5268 10 8 1.0781 -4.9595 -0.5601 11 6 1.1315 -4.8015 -2.8875 12 6 1.3846 -3.9896 -4.0005 13 6 1.2338 -4.4892 -5.2596 14 6 0.8114 -5.8212 -5.4408 15 6 0.6479 -6.3408 -6.7422 16 1 -0.0243 -7.1688 -6.9125 17 6 1.3580 -5.7820 -7.8148 18 7 2.4078 -5.0389 -7.5865 19 14 0.8026 -6.1002 -9.5697 20 1 -0.5806 -5.5912 -9.7512 21 1 1.7147 -5.4032 -10.5117 22 1 0.8325 -7.5599 -9.8412 23 6 0.5524 -6.6325 -4.3183 24 6 0.7117 -6.1263 -3.0629 25 1 -0.3634 -0.0003 -1.0276 26 1 -0.3633 0.8901 0.5137 27 1 -0.3634 -0.8897 0.5142 28 1 2.0367 2.1690 0.0004 29 1 4.5060 1.2923 0.0011 30 1 2.5900 -3.1299 0.5280 31 1 0.8936 -2.5907 0.5247 32 1 1.7045 -2.9676 -3.8606 33 1 1.4335 -3.8639 -6.1171 34 1 2.8992 -4.6526 -8.3284 35 1 0.2280 -7.6539 -4.4525 36 1 0.5130 -6.7474 -2.2019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526896734.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:39 Heat of formation + Delta-G solvation = -63.449588 kcal Electronic energy + Delta-G solvation = -21108.008667 eV Core-core repulsion = 17716.317100 eV Total energy + Delta-G solvation = -3391.691568 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.63686 -39.59638 -37.48557 -35.76447 -34.20721 -33.97025 -31.34098 -30.28343 -29.52456 -28.35690 -26.34955 -25.24814 -22.39346 -21.51138 -20.98155 -20.01092 -19.78925 -17.58121 -17.26687 -17.01752 -16.15203 -15.81203 -15.80600 -15.39048 -14.44388 -14.05659 -13.74035 -13.43966 -13.16565 -13.05486 -12.82301 -12.69336 -12.49447 -12.32410 -12.12664 -11.88028 -11.50184 -11.42155 -11.30173 -11.04327 -10.71844 -10.27439 -10.17454 -9.67973 -9.64524 -9.52405 -9.39146 -8.49180 -7.77433 -7.66181 -7.11442 -4.69849 1.52193 2.02808 2.43778 2.86210 2.87567 2.91035 2.94108 3.01689 3.59724 3.65923 3.69379 4.44516 4.61778 4.80044 4.86107 5.17062 5.31390 5.39369 5.49854 5.62219 5.70682 5.77650 5.94666 5.99447 6.09591 6.19339 6.24591 6.47227 6.72268 6.78246 6.96273 6.97838 7.07704 7.09331 7.39454 7.64760 7.75997 7.81703 7.98552 8.33292 8.54312 8.67254 8.68796 9.79677 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.022119 B = 0.003480 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.587032 B = 8043.917236 C = 8761.198895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.152 4.152 3 C -0.216 4.216 4 C -0.030 4.030 5 O -0.169 6.169 6 C -0.019 4.019 7 C 0.149 3.851 8 O -0.354 6.354 9 C 0.517 3.483 10 O -0.552 6.552 11 C -0.275 4.275 12 C -0.042 4.042 13 C -0.185 4.185 14 C 0.132 3.868 15 C -0.434 4.434 16 H 0.087 0.913 17 C 0.073 3.927 18 N -0.763 5.763 19 Si 0.916 3.084 20 H -0.259 1.259 21 H -0.275 1.275 22 H -0.261 1.261 23 C -0.239 4.239 24 C -0.017 4.017 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.149 0.851 29 H 0.204 0.796 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.122 0.878 34 H 0.290 0.710 35 H 0.102 0.898 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.033 9.932 7.521 12.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.153 4.153 3 C -0.235 4.235 4 C -0.098 4.098 5 O -0.064 6.064 6 C -0.068 4.068 7 C 0.075 3.925 8 O -0.272 6.272 9 C 0.369 3.631 10 O -0.446 6.446 11 C -0.278 4.278 12 C -0.060 4.060 13 C -0.204 4.204 14 C 0.129 3.871 15 C -0.461 4.461 16 H 0.105 0.895 17 C -0.150 4.150 18 N -0.385 5.385 19 Si 0.739 3.261 20 H -0.183 1.183 21 H -0.199 1.199 22 H -0.186 1.186 23 C -0.259 4.259 24 C -0.035 4.035 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.167 0.833 29 H 0.221 0.779 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.139 0.861 34 H 0.101 0.899 35 H 0.120 0.880 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.363 9.686 7.695 12.376 hybrid contribution -0.027 0.207 -0.652 0.685 sum 0.336 9.893 7.043 12.149 Atomic orbital electron populations 1.20249 0.88973 1.02406 1.02749 1.20312 0.97328 0.91904 1.05779 1.21716 0.92581 0.99767 1.09462 1.24043 0.99786 0.80674 1.05329 1.84035 1.28701 1.22697 1.71014 1.21693 0.81111 0.95323 1.08714 1.20831 1.01616 0.86528 0.83480 1.86686 1.80197 1.31419 1.28945 1.21609 0.72557 0.78002 0.90892 1.90702 1.51668 1.59444 1.42788 1.18187 1.25148 0.96805 0.87639 1.20649 0.95493 0.97451 0.92456 1.21008 1.07821 0.95938 0.95645 1.17844 0.85806 0.90949 0.92544 1.19913 1.20511 1.14095 0.91597 0.89457 1.26163 0.93220 0.92954 1.02632 1.69734 1.11179 1.21996 1.35592 0.86215 0.80073 0.80021 0.79750 1.18334 1.19926 1.18553 1.20681 1.14027 0.99184 0.91980 1.20345 0.93865 0.92660 0.96653 0.90767 0.91513 0.91542 0.83316 0.77937 0.90055 0.88533 0.88082 0.86051 0.89891 0.88019 0.87889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.98 10.18 36.00 0.37 -0.61 16 2 C -0.15 -2.03 6.16 -104.74 -0.65 -2.68 16 3 C -0.22 -2.47 10.87 -39.70 -0.43 -2.90 16 4 C -0.03 -0.34 12.09 29.41 0.36 0.02 16 5 O -0.17 -2.48 10.65 5.68 0.06 -2.42 16 6 C -0.02 -0.28 6.96 -35.63 -0.25 -0.53 16 7 C 0.15 2.41 5.80 36.00 0.21 2.62 16 8 O -0.35 -7.06 9.43 -40.68 -0.38 -7.44 16 9 C 0.52 11.47 7.89 34.51 0.27 11.75 16 10 O -0.55 -12.76 16.11 -19.27 -0.31 -13.07 16 11 C -0.28 -6.50 5.89 -104.75 -0.62 -7.12 16 12 C -0.04 -0.98 9.55 -39.59 -0.38 -1.36 16 13 C -0.19 -4.61 8.63 -39.27 -0.34 -4.95 16 14 C 0.13 3.33 5.58 -106.80 -0.60 2.74 16 15 C -0.43 -10.59 9.04 -37.75 -0.34 -10.93 16 16 H 0.09 2.00 7.91 -52.49 -0.42 1.59 16 17 C 0.07 1.67 5.14 -17.31 -0.09 1.58 16 18 N -0.76 -18.11 10.95 55.56 0.61 -17.50 16 19 Si 0.92 16.88 29.60 -169.99 -5.03 11.85 16 20 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 21 H -0.27 -4.93 7.11 56.52 0.40 -4.52 16 22 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 23 C -0.24 -5.70 9.73 -39.27 -0.38 -6.08 16 24 C -0.02 -0.39 9.52 -39.59 -0.38 -0.76 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.72 7.14 -51.93 -0.37 0.35 16 28 H 0.15 1.30 8.06 -52.49 -0.42 0.87 16 29 H 0.20 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.10 1.40 7.13 -51.93 -0.37 1.03 16 32 H 0.10 2.23 7.59 -52.48 -0.40 1.83 16 33 H 0.12 3.06 6.15 -52.49 -0.32 2.73 16 34 H 0.29 6.18 8.29 -40.82 -0.34 5.85 16 35 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 36 H 0.10 2.26 7.63 -52.48 -0.40 1.86 16 LS Contribution 321.53 15.07 4.85 4.85 Total: -1.00 -28.47 321.53 -7.40 -35.87 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -3.95 Total: 7.10 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: -3.24 Total: -19.23 kcal Atomic # 7 Polarization: -18.11 SS G_CDS: 0.61 Total: -17.50 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.63 Total: -22.93 kcal Atomic # 14 Polarization: 16.88 SS G_CDS: -5.03 Total: 11.85 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.47 -7.40 -35.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526896734.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.578 kcal (2) G-P(sol) polarization free energy of solvation -28.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds