Wall clock time and date at job start Tue Mar 31 2020 06:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.41381 * 126.58139 * 2 1 4 4 C 1.34511 * 106.84386 * 179.97438 * 3 2 1 5 5 O 1.34307 * 108.42067 * 0.02562 * 4 3 2 6 6 C 1.34309 * 109.47512 * 359.76949 * 5 4 3 7 7 C 1.50696 * 125.79364 * 180.23633 * 6 5 4 8 8 O 1.45197 * 109.47442 * 270.16815 * 7 6 5 9 9 C 1.34770 * 117.00279 * 179.97438 * 8 7 6 10 10 O 1.21509 * 119.99974 * 359.97438 * 9 8 7 11 11 C 1.47505 * 119.99907 * 179.97438 * 9 8 7 12 12 C 1.40068 * 119.90467 * 359.72530 * 11 9 8 13 13 C 1.36302 * 120.10253 * 179.72019 * 12 11 9 14 14 C 1.40899 * 119.89687 * 0.55062 * 13 12 11 15 15 C 1.41089 * 120.09958 * 179.70051 * 14 13 12 16 16 H 1.08000 * 119.99823 * 204.67340 * 15 14 13 17 17 C 1.40248 * 119.99877 * 24.66598 * 15 14 13 18 18 N 1.30628 * 119.99861 * 17.86985 * 17 15 14 19 19 Si 1.86802 * 119.99995 * 197.86966 * 17 15 14 20 20 H 1.48500 * 109.47130 * 60.00061 * 19 17 15 21 21 H 1.48501 * 109.47176 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46821 * 300.00040 * 19 17 15 23 23 C 1.40901 * 119.80173 * 359.72528 * 14 13 12 24 24 C 1.36295 * 119.89977 * 359.97438 * 23 14 13 25 25 H 1.08997 * 109.47611 * 90.01521 * 1 2 3 26 26 H 1.09005 * 109.46958 * 330.01290 * 1 2 3 27 27 H 1.08998 * 109.47272 * 210.02493 * 1 2 3 28 28 H 1.08000 * 126.57897 * 0.02562 * 3 2 1 29 29 H 1.07995 * 125.79274 * 180.02562 * 4 3 2 30 30 H 1.09004 * 109.46628 * 30.16231 * 7 6 5 31 31 H 1.08994 * 109.47324 * 150.16218 * 7 6 5 32 32 H 1.08003 * 119.94507 * 0.02562 * 12 11 9 33 33 H 1.07995 * 120.05185 * 180.27695 * 13 12 11 34 34 H 0.97006 * 119.99869 * 179.97438 * 18 17 15 35 35 H 1.08005 * 120.04904 * 179.97438 * 23 14 13 36 36 H 1.08005 * 119.94965 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1353 0.0000 4 6 3.6156 0.6810 0.0006 5 8 3.5848 -0.6617 0.0004 6 6 2.3086 -1.0802 0.0047 7 6 1.8520 -2.5164 0.0110 8 8 1.7062 -2.9839 -1.3558 9 6 1.3020 -4.2582 -1.5268 10 8 1.0781 -4.9595 -0.5601 11 6 1.1315 -4.8015 -2.8875 12 6 1.3846 -3.9896 -4.0005 13 6 1.2338 -4.4892 -5.2596 14 6 0.8114 -5.8212 -5.4408 15 6 0.6479 -6.3408 -6.7422 16 1 -0.0243 -7.1688 -6.9125 17 6 1.3580 -5.7820 -7.8148 18 7 2.4078 -5.0389 -7.5865 19 14 0.8026 -6.1002 -9.5697 20 1 -0.5806 -5.5912 -9.7512 21 1 1.7147 -5.4032 -10.5117 22 1 0.8325 -7.5599 -9.8412 23 6 0.5524 -6.6325 -4.3183 24 6 0.7117 -6.1263 -3.0629 25 1 -0.3634 -0.0003 -1.0276 26 1 -0.3633 0.8901 0.5137 27 1 -0.3634 -0.8897 0.5142 28 1 2.0367 2.1690 0.0004 29 1 4.5060 1.2923 0.0011 30 1 2.5900 -3.1299 0.5280 31 1 0.8936 -2.5907 0.5247 32 1 1.7045 -2.9676 -3.8606 33 1 1.4335 -3.8639 -6.1171 34 1 2.8992 -4.6526 -8.3284 35 1 0.2280 -7.6539 -4.4525 36 1 0.5130 -6.7474 -2.2019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526896734.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:38 Heat of formation + Delta-G solvation = -76.516454 kcal Electronic energy + Delta-G solvation = -21108.575289 eV Core-core repulsion = 17716.317100 eV Total energy + Delta-G solvation = -3392.258190 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.62798 -41.27740 -39.29159 -37.41143 -35.76326 -35.21633 -32.60608 -31.90358 -31.38911 -29.43250 -28.00142 -26.48092 -24.11468 -22.84629 -22.46186 -21.74177 -20.82850 -19.41182 -18.71606 -18.41000 -17.57320 -17.30259 -17.13310 -16.85558 -15.80830 -15.58651 -15.23275 -15.07894 -14.61603 -14.19529 -14.04775 -13.97868 -13.86783 -13.70489 -13.49347 -13.37032 -13.24040 -12.87497 -12.68678 -12.46992 -12.37333 -11.85586 -11.77847 -11.44890 -11.31790 -11.13865 -10.60155 -9.64862 -9.54643 -9.51472 -8.85641 -6.56378 0.21752 0.44916 1.12711 1.37105 1.42149 1.48491 1.53504 1.83970 1.86784 2.14866 2.29384 2.66977 3.58131 3.61573 3.83754 3.94313 4.02558 4.07129 4.29258 4.36895 4.41683 4.60486 4.74314 4.76366 4.83591 4.91478 4.97088 5.10550 5.11488 5.20380 5.20993 5.33970 5.54558 5.57289 5.79533 5.89494 5.95149 6.11584 6.13669 6.47835 6.68979 6.80847 6.95786 8.08853 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.022119 B = 0.003480 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.587032 B = 8043.917236 C = 8761.198895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.149 4.149 3 C -0.227 4.227 4 C -0.021 4.021 5 O -0.192 6.192 6 C -0.060 4.060 7 C 0.148 3.852 8 O -0.361 6.361 9 C 0.522 3.478 10 O -0.565 6.565 11 C -0.292 4.292 12 C -0.040 4.040 13 C -0.203 4.203 14 C 0.106 3.894 15 C -0.458 4.458 16 H 0.095 0.905 17 C 0.036 3.964 18 N -0.791 5.791 19 Si 0.992 3.008 20 H -0.256 1.256 21 H -0.265 1.265 22 H -0.255 1.255 23 C -0.249 4.249 24 C -0.020 4.020 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.179 0.821 29 H 0.246 0.754 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.300 0.700 35 H 0.116 0.884 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.099 11.216 7.040 13.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.151 4.151 3 C -0.245 4.245 4 C -0.088 4.088 5 O -0.089 6.089 6 C -0.109 4.109 7 C 0.075 3.925 8 O -0.279 6.279 9 C 0.375 3.625 10 O -0.460 6.460 11 C -0.295 4.295 12 C -0.059 4.059 13 C -0.222 4.222 14 C 0.102 3.898 15 C -0.484 4.484 16 H 0.113 0.887 17 C -0.185 4.185 18 N -0.414 5.414 19 Si 0.811 3.189 20 H -0.180 1.180 21 H -0.189 1.189 22 H -0.179 1.179 23 C -0.268 4.268 24 C -0.039 4.039 25 H 0.088 0.912 26 H 0.110 0.890 27 H 0.084 0.916 28 H 0.196 0.804 29 H 0.262 0.738 30 H 0.099 0.901 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.111 0.889 35 H 0.134 0.866 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.300 10.983 7.239 13.158 hybrid contribution 0.064 -0.066 -0.430 0.440 sum 0.364 10.917 6.808 12.871 Atomic orbital electron populations 1.20343 0.87810 1.03698 1.02790 1.20751 0.98401 0.92195 1.03733 1.22118 0.92305 1.00635 1.09476 1.24995 1.01534 0.79548 1.02709 1.84010 1.28630 1.24577 1.71650 1.21578 0.81910 0.95037 1.12401 1.21027 1.02461 0.87599 0.81421 1.86648 1.79510 1.29986 1.31708 1.21323 0.72319 0.78688 0.90158 1.90680 1.52286 1.60047 1.43020 1.18428 1.25333 0.97165 0.88553 1.20735 0.95025 0.97920 0.92180 1.21003 1.09246 0.96145 0.95809 1.18187 0.86562 0.91398 0.93624 1.20262 1.21129 1.14927 0.92114 0.88660 1.27063 0.92654 0.92156 1.06611 1.69766 1.11916 1.22219 1.37466 0.85088 0.79593 0.80134 0.74097 1.18024 1.18889 1.17865 1.20877 1.14226 0.99836 0.91880 1.20513 0.93561 0.92872 0.96942 0.91217 0.88990 0.91582 0.80403 0.73815 0.90109 0.87281 0.87116 0.86893 0.88873 0.86581 0.86770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.89 10.18 71.23 0.73 -1.17 16 2 C -0.15 -3.80 6.16 -19.94 -0.12 -3.92 16 3 C -0.23 -4.60 10.87 22.19 0.24 -4.36 16 4 C -0.02 -0.41 12.09 66.97 0.81 0.40 16 5 O -0.19 -5.49 10.65 -2.59 -0.03 -5.51 16 6 C -0.06 -1.81 6.96 24.83 0.17 -1.63 16 7 C 0.15 4.81 5.80 71.23 0.41 5.23 16 8 O -0.36 -14.54 9.43 -56.81 -0.54 -15.07 16 9 C 0.52 23.45 7.89 70.27 0.55 24.00 16 10 O -0.56 -26.25 16.11 19.81 0.32 -25.93 16 11 C -0.29 -14.03 5.89 -19.94 -0.12 -14.14 16 12 C -0.04 -1.92 9.55 22.26 0.21 -1.71 16 13 C -0.20 -10.36 8.63 22.47 0.19 -10.17 16 14 C 0.11 5.44 5.58 -21.28 -0.12 5.32 16 15 C -0.46 -22.45 9.04 23.46 0.21 -22.24 16 16 H 0.10 4.36 7.91 -2.91 -0.02 4.34 16 17 C 0.04 1.61 5.14 85.36 0.44 2.05 16 18 N -0.79 -37.64 10.95 21.87 0.24 -37.40 16 19 Si 0.99 33.64 29.60 68.60 2.03 35.67 16 20 H -0.26 -8.53 7.11 99.48 0.71 -7.83 16 21 H -0.26 -8.49 7.11 99.48 0.71 -7.78 16 22 H -0.25 -8.34 7.11 99.48 0.71 -7.64 16 23 C -0.25 -12.00 9.73 22.47 0.22 -11.78 16 24 C -0.02 -0.96 9.52 22.26 0.21 -0.75 16 25 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 27 H 0.07 1.38 7.14 -2.39 -0.02 1.36 16 28 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 29 H 0.25 2.39 8.06 -2.91 -0.02 2.37 16 30 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 31 H 0.11 3.18 7.13 -2.39 -0.02 3.17 16 32 H 0.11 4.99 7.59 -2.91 -0.02 4.96 16 33 H 0.11 5.86 6.15 -2.91 -0.02 5.84 16 34 H 0.30 12.68 8.29 -92.70 -0.77 11.91 16 35 H 0.12 5.09 8.06 -2.91 -0.02 5.07 16 36 H 0.11 5.04 7.63 -2.91 -0.02 5.02 16 Total: -1.00 -61.59 321.53 7.17 -54.41 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 1.10 Total: 28.71 kcal Atomic # 6 Polarization: -38.93 SS G_CDS: 4.04 Total: -34.88 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.24 Total: -37.40 kcal Atomic # 8 Polarization: -46.28 SS G_CDS: -0.24 Total: -46.52 kcal Atomic # 14 Polarization: 33.64 SS G_CDS: 2.03 Total: 35.67 kcal Total: -61.59 7.17 -54.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526896734.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.104 kcal (2) G-P(sol) polarization free energy of solvation -61.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds