Wall clock time and date at job start Tue Mar 31 2020 06:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34166 * 127.02154 * 2 1 4 4 O 1.34214 * 109.13981 * 179.97438 * 3 2 1 5 5 C 1.33631 * 110.92754 * 359.73027 * 4 3 2 6 6 C 1.36501 * 108.38099 * 0.44131 * 5 4 3 7 7 C 1.47223 * 127.19875 * 179.83409 * 6 5 4 8 8 O 1.21535 * 119.99955 * 179.69079 * 7 6 5 9 9 O 1.34765 * 120.00316 * 359.69443 * 7 6 5 10 10 C 1.45206 * 117.00420 * 179.97438 * 9 7 6 11 11 C 1.50693 * 109.47377 * 179.97438 * 10 9 7 12 12 C 1.38636 * 119.74995 * 269.72984 * 11 10 9 13 13 C 1.37620 * 120.25044 * 179.72263 * 12 11 10 14 14 C 1.40722 * 119.74051 * 0.56911 * 13 12 11 15 15 C 1.41391 * 120.24287 * 179.68268 * 14 13 12 16 16 H 1.07997 * 120.00391 * 204.40660 * 15 14 13 17 17 C 1.39949 * 119.99985 * 24.40519 * 15 14 13 18 18 N 1.30824 * 119.99935 * 17.84822 * 17 15 14 19 19 Si 1.86807 * 119.99972 * 197.84738 * 17 15 14 20 20 H 1.48501 * 109.47136 * 90.00131 * 19 17 15 21 21 H 1.48504 * 109.46832 * 210.00041 * 19 17 15 22 22 H 1.48501 * 109.46867 * 330.00268 * 19 17 15 23 23 C 1.40711 * 119.51327 * 359.70277 * 14 13 12 24 24 C 1.37621 * 119.74483 * 0.02562 * 23 14 13 25 25 H 1.08998 * 109.47199 * 270.00227 * 1 2 3 26 26 H 1.09005 * 109.47237 * 30.00118 * 1 2 3 27 27 H 1.09001 * 109.46974 * 149.99370 * 1 2 3 28 28 H 1.07998 * 125.42853 * 0.02562 * 3 2 1 29 29 H 1.07993 * 125.80792 * 180.28817 * 5 4 3 30 30 H 1.08994 * 109.46994 * 300.00102 * 10 9 7 31 31 H 1.08999 * 109.46792 * 59.99672 * 10 9 7 32 32 H 1.08004 * 119.87449 * 359.97255 * 12 11 10 33 33 H 1.07997 * 120.13018 * 180.27197 * 13 12 11 34 34 H 0.96997 * 119.99668 * 180.02562 * 18 17 15 35 35 H 1.07998 * 120.12623 * 179.97438 * 23 14 13 36 36 H 1.07999 * 119.87677 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0712 0.0000 4 8 3.5922 0.6591 0.0006 5 6 3.6632 -0.6753 0.0068 6 6 2.3925 -1.1740 0.0006 7 6 1.9924 -2.5908 0.0007 8 8 0.8143 -2.8896 0.0004 9 8 2.9324 -3.5565 0.0013 10 6 2.4652 -4.9314 0.0019 11 6 3.6487 -5.8642 0.0019 12 6 4.1851 -6.2949 -1.2018 13 6 5.2694 -7.1423 -1.2139 14 6 5.8261 -7.5810 0.0018 15 6 6.9360 -8.4569 0.0018 16 1 7.1208 -9.0946 0.8536 17 6 7.7952 -8.4977 -1.1022 18 7 7.7975 -7.5151 -1.9660 19 14 8.9388 -9.9551 -1.3424 20 1 8.2530 -10.9944 -2.1515 21 1 10.1673 -9.5094 -2.0477 22 1 9.3052 -10.5201 -0.0188 23 6 5.2699 -7.1418 1.2174 24 6 4.1891 -6.2900 1.2055 25 1 -0.3633 0.0000 1.0276 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3633 -0.8899 -0.5139 28 1 1.9892 2.1009 0.0004 29 1 4.5713 -1.2597 0.0130 30 1 1.8617 -5.1096 0.8919 31 1 1.8618 -5.1104 -0.8880 32 1 3.7528 -5.9610 -2.1335 33 1 5.6884 -7.4731 -2.1526 34 1 8.3927 -7.5436 -2.7313 35 1 5.6891 -7.4726 2.1562 36 1 3.7607 -5.9512 2.1372 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535001964.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:31 Heat of formation + Delta-G solvation = -63.403578 kcal Electronic energy + Delta-G solvation = -20925.238733 eV Core-core repulsion = 17533.549161 eV Total energy + Delta-G solvation = -3391.689573 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.68192 -39.76897 -37.67186 -35.99348 -33.96242 -33.88147 -31.22420 -30.45666 -29.38138 -27.37708 -27.23217 -24.52876 -23.24505 -21.10562 -20.83604 -20.07632 -20.04496 -17.99188 -17.40721 -16.67389 -16.42874 -15.77829 -15.69316 -15.31441 -14.66704 -14.11663 -13.74923 -13.71976 -13.56074 -13.21667 -12.76263 -12.65255 -12.35167 -12.33280 -12.04004 -11.74948 -11.64863 -11.21036 -11.01252 -10.84718 -10.47440 -10.28064 -10.14212 -9.72083 -9.67347 -9.47971 -9.24530 -8.82485 -7.58284 -7.47162 -6.88381 -4.48313 1.21497 1.84731 2.41543 2.79911 2.96633 2.99208 3.02701 3.04742 3.21760 3.40605 3.84393 4.44747 4.48809 4.62005 4.97474 5.23986 5.39291 5.56851 5.60605 5.66496 5.68014 5.75337 5.80476 5.91259 6.09802 6.23989 6.29526 6.30399 6.81930 6.84265 6.87411 6.96031 7.16785 7.24949 7.50076 7.72470 7.94251 7.99548 8.11427 8.17641 8.52354 8.76922 8.85090 10.05341 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.029715 B = 0.003098 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.050978 B = 9036.993726 C = 9534.828721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.132 4.132 3 C -0.052 4.052 4 O -0.172 6.172 5 C 0.058 3.942 6 C -0.228 4.228 7 C 0.530 3.470 8 O -0.516 6.516 9 O -0.349 6.349 10 C 0.139 3.861 11 C -0.237 4.237 12 C -0.075 4.075 13 C -0.170 4.170 14 C 0.118 3.882 15 C -0.456 4.456 16 H 0.080 0.920 17 C 0.075 3.925 18 N -0.785 5.785 19 Si 0.911 3.089 20 H -0.266 1.266 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.230 4.230 24 C -0.063 4.063 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.208 0.792 29 H 0.224 0.776 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.120 0.880 34 H 0.283 0.717 35 H 0.095 0.905 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.874 12.440 1.302 14.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.133 4.133 3 C -0.117 4.117 4 O -0.067 6.067 5 C -0.012 4.012 6 C -0.231 4.231 7 C 0.375 3.625 8 O -0.407 6.407 9 O -0.266 6.266 10 C 0.067 3.933 11 C -0.238 4.238 12 C -0.094 4.094 13 C -0.190 4.190 14 C 0.116 3.884 15 C -0.485 4.485 16 H 0.099 0.901 17 C -0.144 4.144 18 N -0.409 5.409 19 Si 0.735 3.265 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.250 4.250 24 C -0.082 4.082 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.100 0.900 28 H 0.224 0.776 29 H 0.240 0.760 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.138 0.862 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.849 12.586 1.086 14.370 hybrid contribution 0.397 -0.758 -0.178 0.874 sum -6.452 11.827 0.909 13.503 Atomic orbital electron populations 1.20249 0.88294 1.03230 1.02614 1.21398 0.97252 0.90178 1.04512 1.23666 0.79745 0.99577 1.08722 1.83815 1.29568 1.22619 1.70717 1.24860 0.99574 0.80364 0.96419 1.20647 0.93810 0.91575 1.17068 1.20031 0.84151 0.85477 0.72827 1.90774 1.19044 1.84011 1.46912 1.86762 1.39032 1.17794 1.82989 1.21736 0.95558 0.75030 1.00988 1.18678 1.03902 1.07088 0.94136 1.20547 0.96097 0.97653 0.95089 1.21297 0.96460 1.02392 0.98820 1.17689 0.90709 0.89082 0.90948 1.19691 1.07583 1.19267 1.01933 0.90142 1.25976 0.97472 0.96203 0.94756 1.69826 1.32280 1.28169 1.10635 0.86268 0.79112 0.81492 0.79644 1.19141 1.20201 1.18504 1.20964 1.01351 1.05527 0.97125 1.20398 0.95581 0.96987 0.95202 0.91131 0.91616 0.89985 0.77556 0.75959 0.92018 0.91964 0.89309 0.86234 0.90617 0.88715 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.92 10.00 36.01 0.36 -0.56 16 2 C -0.13 -1.61 6.37 -102.48 -0.65 -2.26 16 3 C -0.05 -0.50 11.96 29.30 0.35 -0.15 16 4 O -0.17 -1.92 10.52 7.71 0.08 -1.84 16 5 C 0.06 0.71 11.94 30.11 0.36 1.07 16 6 C -0.23 -3.33 6.31 -103.30 -0.65 -3.98 16 7 C 0.53 9.26 7.95 34.38 0.27 9.54 16 8 O -0.52 -9.83 15.20 -19.29 -0.29 -10.12 16 9 O -0.35 -6.56 10.06 -40.67 -0.41 -6.97 16 10 C 0.14 2.67 5.59 36.00 0.20 2.87 16 11 C -0.24 -5.20 5.54 -104.33 -0.58 -5.78 16 12 C -0.08 -1.74 9.67 -39.66 -0.38 -2.12 16 13 C -0.17 -4.33 8.70 -38.87 -0.34 -4.67 16 14 C 0.12 3.08 5.57 -106.83 -0.60 2.48 16 15 C -0.46 -11.72 9.05 -37.74 -0.34 -12.06 16 16 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 17 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 18 N -0.78 -19.63 10.95 55.55 0.61 -19.03 16 19 Si 0.91 18.02 29.60 -169.99 -5.03 12.98 16 20 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 21 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 22 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 23 C -0.23 -5.53 9.80 -38.87 -0.38 -5.91 16 24 C -0.06 -1.41 9.67 -39.66 -0.38 -1.79 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 1.04 6.92 -51.93 -0.36 0.68 16 28 H 0.21 1.13 8.06 -52.49 -0.42 0.70 16 29 H 0.22 2.28 8.06 -52.49 -0.42 1.86 16 30 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 31 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 32 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 33 H 0.12 3.12 6.16 -52.49 -0.32 2.80 16 34 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 35 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 36 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 322.91 15.07 4.87 4.87 Total: -1.00 -29.17 322.91 -7.06 -36.23 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -4.03 Total: 5.48 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -2.85 Total: -21.60 kcal Atomic # 7 Polarization: -19.63 SS G_CDS: 0.61 Total: -19.03 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.62 Total: -18.93 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.17 -7.06 -36.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535001964.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.174 kcal (2) G-P(sol) polarization free energy of solvation -29.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds