Wall clock time and date at job start Tue Mar 31 2020 06:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34166 * 127.02154 * 2 1 4 4 O 1.34214 * 109.13981 * 179.97438 * 3 2 1 5 5 C 1.33631 * 110.92754 * 359.73027 * 4 3 2 6 6 C 1.36501 * 108.38099 * 0.44131 * 5 4 3 7 7 C 1.47223 * 127.19875 * 179.83409 * 6 5 4 8 8 O 1.21535 * 119.99955 * 179.69079 * 7 6 5 9 9 O 1.34765 * 120.00316 * 359.69443 * 7 6 5 10 10 C 1.45206 * 117.00420 * 179.97438 * 9 7 6 11 11 C 1.50693 * 109.47377 * 179.97438 * 10 9 7 12 12 C 1.38636 * 119.74995 * 269.72984 * 11 10 9 13 13 C 1.37620 * 120.25044 * 179.72263 * 12 11 10 14 14 C 1.40722 * 119.74051 * 0.56911 * 13 12 11 15 15 C 1.41391 * 120.24287 * 179.68268 * 14 13 12 16 16 H 1.07997 * 120.00391 * 204.40660 * 15 14 13 17 17 C 1.39949 * 119.99985 * 24.40519 * 15 14 13 18 18 N 1.30824 * 119.99935 * 17.84822 * 17 15 14 19 19 Si 1.86807 * 119.99972 * 197.84738 * 17 15 14 20 20 H 1.48501 * 109.47136 * 90.00131 * 19 17 15 21 21 H 1.48504 * 109.46832 * 210.00041 * 19 17 15 22 22 H 1.48501 * 109.46867 * 330.00268 * 19 17 15 23 23 C 1.40711 * 119.51327 * 359.70277 * 14 13 12 24 24 C 1.37621 * 119.74483 * 0.02562 * 23 14 13 25 25 H 1.08998 * 109.47199 * 270.00227 * 1 2 3 26 26 H 1.09005 * 109.47237 * 30.00118 * 1 2 3 27 27 H 1.09001 * 109.46974 * 149.99370 * 1 2 3 28 28 H 1.07998 * 125.42853 * 0.02562 * 3 2 1 29 29 H 1.07993 * 125.80792 * 180.28817 * 5 4 3 30 30 H 1.08994 * 109.46994 * 300.00102 * 10 9 7 31 31 H 1.08999 * 109.46792 * 59.99672 * 10 9 7 32 32 H 1.08004 * 119.87449 * 359.97255 * 12 11 10 33 33 H 1.07997 * 120.13018 * 180.27197 * 13 12 11 34 34 H 0.96997 * 119.99668 * 180.02562 * 18 17 15 35 35 H 1.07998 * 120.12623 * 179.97438 * 23 14 13 36 36 H 1.07999 * 119.87677 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0712 0.0000 4 8 3.5922 0.6591 0.0006 5 6 3.6632 -0.6753 0.0068 6 6 2.3925 -1.1740 0.0006 7 6 1.9924 -2.5908 0.0007 8 8 0.8143 -2.8896 0.0004 9 8 2.9324 -3.5565 0.0013 10 6 2.4652 -4.9314 0.0019 11 6 3.6487 -5.8642 0.0019 12 6 4.1851 -6.2949 -1.2018 13 6 5.2694 -7.1423 -1.2139 14 6 5.8261 -7.5810 0.0018 15 6 6.9360 -8.4569 0.0018 16 1 7.1208 -9.0946 0.8536 17 6 7.7952 -8.4977 -1.1022 18 7 7.7975 -7.5151 -1.9660 19 14 8.9388 -9.9551 -1.3424 20 1 8.2530 -10.9944 -2.1515 21 1 10.1673 -9.5094 -2.0477 22 1 9.3052 -10.5201 -0.0188 23 6 5.2699 -7.1418 1.2174 24 6 4.1891 -6.2900 1.2055 25 1 -0.3633 0.0000 1.0276 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3633 -0.8899 -0.5139 28 1 1.9892 2.1009 0.0004 29 1 4.5713 -1.2597 0.0130 30 1 1.8617 -5.1096 0.8919 31 1 1.8618 -5.1104 -0.8880 32 1 3.7528 -5.9610 -2.1335 33 1 5.6884 -7.4731 -2.1526 34 1 8.3927 -7.5436 -2.7313 35 1 5.6891 -7.4726 2.1562 36 1 3.7607 -5.9512 2.1372 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535001964.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:31 Heat of formation + Delta-G solvation = -77.505100 kcal Electronic energy + Delta-G solvation = -20925.850221 eV Core-core repulsion = 17533.549161 eV Total energy + Delta-G solvation = -3392.301060 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.59050 -41.19463 -39.46833 -37.47298 -35.69233 -34.88582 -32.74071 -31.72113 -31.23208 -28.95837 -28.17653 -26.05675 -24.67944 -22.96231 -21.98541 -21.68957 -21.14414 -19.27931 -19.07157 -18.04944 -17.58018 -17.24915 -16.91707 -16.79383 -15.98026 -15.66923 -15.44015 -15.16300 -14.44531 -14.38186 -14.09678 -13.90729 -13.86340 -13.81249 -13.54508 -13.47859 -12.87351 -12.71127 -12.59696 -12.52173 -12.12028 -11.75424 -11.67722 -11.45456 -11.29504 -11.05783 -10.69051 -9.67348 -9.45312 -9.34807 -8.69555 -6.40638 0.12203 0.70851 0.98715 1.10198 1.38343 1.43412 1.52296 1.80070 1.99279 2.09452 2.19359 2.71751 3.52385 3.62935 3.72433 4.03797 4.07801 4.09567 4.27888 4.44790 4.47479 4.53902 4.55710 4.79421 4.90852 4.99855 5.00062 5.02477 5.11256 5.29188 5.36144 5.39181 5.53329 5.64083 5.87118 5.93027 6.04749 6.13494 6.30865 6.63397 6.73405 6.87680 6.96102 8.27009 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.029715 B = 0.003098 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.050978 B = 9036.993726 C = 9534.828721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.160 4.160 3 C -0.026 4.026 4 O -0.170 6.170 5 C 0.071 3.929 6 C -0.266 4.266 7 C 0.529 3.471 8 O -0.539 6.539 9 O -0.358 6.358 10 C 0.143 3.857 11 C -0.231 4.231 12 C -0.080 4.080 13 C -0.193 4.193 14 C 0.089 3.911 15 C -0.492 4.492 16 H 0.080 0.920 17 C 0.035 3.965 18 N -0.817 5.817 19 Si 0.985 3.015 20 H -0.262 1.262 21 H -0.267 1.267 22 H -0.257 1.257 23 C -0.244 4.244 24 C -0.064 4.064 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.053 0.947 28 H 0.255 0.745 29 H 0.237 0.763 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.291 0.709 35 H 0.103 0.897 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.936 14.160 1.554 15.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.161 4.161 3 C -0.091 4.091 4 O -0.064 6.064 5 C 0.000 4.000 6 C -0.268 4.268 7 C 0.377 3.623 8 O -0.431 6.431 9 O -0.275 6.275 10 C 0.071 3.929 11 C -0.232 4.232 12 C -0.098 4.098 13 C -0.212 4.212 14 C 0.086 3.914 15 C -0.521 4.521 16 H 0.098 0.902 17 C -0.181 4.181 18 N -0.442 5.442 19 Si 0.805 3.195 20 H -0.187 1.187 21 H -0.191 1.191 22 H -0.181 1.181 23 C -0.264 4.264 24 C -0.082 4.082 25 H 0.091 0.909 26 H 0.115 0.885 27 H 0.072 0.928 28 H 0.270 0.730 29 H 0.253 0.747 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.121 0.879 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.921 14.329 1.345 15.969 hybrid contribution 0.311 -1.118 -0.232 1.183 sum -6.610 13.211 1.113 14.814 Atomic orbital electron populations 1.20238 0.87562 1.03372 1.02850 1.21686 0.98111 0.89967 1.06328 1.24489 0.78424 1.00813 1.05389 1.83863 1.30497 1.21875 1.70152 1.25076 0.99245 0.80896 0.94795 1.20750 0.95722 0.90467 1.19875 1.20487 0.83640 0.86246 0.71957 1.90756 1.19755 1.84390 1.48195 1.86716 1.39649 1.17665 1.83446 1.21582 0.94250 0.75147 1.01905 1.18956 1.03875 1.06782 0.93607 1.20769 0.95523 0.97023 0.96489 1.21262 0.97761 1.03963 0.98231 1.18040 0.91542 0.89965 0.91849 1.19939 1.08607 1.20358 1.03153 0.90193 1.26822 0.98717 0.98636 0.93903 1.69870 1.33292 1.29767 1.11236 0.85162 0.77057 0.77631 0.79640 1.18681 1.19144 1.18083 1.21169 1.02167 1.06078 0.96939 1.20701 0.94892 0.96063 0.96554 0.90859 0.88494 0.92773 0.72969 0.74672 0.90870 0.91406 0.87682 0.87744 0.89842 0.87876 0.86495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.63 10.00 71.24 0.71 -0.92 16 2 C -0.16 -3.56 6.37 -18.48 -0.12 -3.68 16 3 C -0.03 -0.42 11.96 66.89 0.80 0.38 16 4 O -0.17 -3.28 10.52 4.67 0.05 -3.23 16 5 C 0.07 1.60 11.94 67.41 0.80 2.40 16 6 C -0.27 -7.45 6.31 -19.01 -0.12 -7.57 16 7 C 0.53 18.33 7.95 70.18 0.56 18.88 16 8 O -0.54 -20.51 15.20 19.72 0.30 -20.21 16 9 O -0.36 -13.23 10.06 -56.76 -0.57 -13.80 16 10 C 0.14 5.39 5.59 71.23 0.40 5.79 16 11 C -0.23 -10.04 5.54 -19.68 -0.11 -10.14 16 12 C -0.08 -3.72 9.67 22.22 0.21 -3.50 16 13 C -0.19 -10.09 8.70 22.73 0.20 -9.90 16 14 C 0.09 4.74 5.57 -21.29 -0.12 4.62 16 15 C -0.49 -26.01 9.05 23.46 0.21 -25.80 16 16 H 0.08 4.06 7.91 -2.91 -0.02 4.03 16 17 C 0.04 1.74 5.14 85.26 0.44 2.18 16 18 N -0.82 -41.78 10.95 21.83 0.24 -41.54 16 19 Si 0.98 37.11 29.60 68.60 2.03 39.14 16 20 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 21 H -0.27 -9.54 7.11 99.48 0.71 -8.83 16 22 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 23 C -0.24 -11.86 9.80 22.73 0.22 -11.64 16 24 C -0.06 -2.80 9.67 22.22 0.21 -2.59 16 25 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.05 1.36 6.92 -2.39 -0.02 1.34 16 28 H 0.25 1.37 8.06 -2.91 -0.02 1.35 16 29 H 0.24 4.48 8.06 -2.91 -0.02 4.45 16 30 H 0.07 2.58 8.08 -2.39 -0.02 2.56 16 31 H 0.07 2.46 8.07 -2.39 -0.02 2.44 16 32 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 33 H 0.10 5.69 6.16 -2.91 -0.02 5.67 16 34 H 0.29 13.37 8.30 -92.71 -0.77 12.60 16 35 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 36 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -64.59 322.91 7.46 -57.14 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 1.10 Total: 23.97 kcal Atomic # 6 Polarization: -45.78 SS G_CDS: 4.31 Total: -41.48 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.24 Total: -41.54 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -0.22 Total: -37.23 kcal Atomic # 14 Polarization: 37.11 SS G_CDS: 2.03 Total: 39.14 kcal Total: -64.59 7.46 -57.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535001964.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.367 kcal (2) G-P(sol) polarization free energy of solvation -64.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds