Wall clock time and date at job start Tue Mar 31 2020 05:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30637 * 1 3 3 Si 1.86803 * 119.99862 * 2 1 4 4 H 1.48502 * 109.47569 * 274.99125 * 3 2 1 5 5 H 1.48500 * 109.46990 * 34.98988 * 3 2 1 6 6 H 1.48502 * 109.47248 * 154.98715 * 3 2 1 7 7 C 1.40234 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99915 * 214.40314 * 7 2 1 9 9 C 1.41085 * 120.00119 * 34.40720 * 7 2 1 10 10 C 1.40901 * 120.09859 * 20.64789 * 9 7 2 11 11 C 1.36308 * 119.89281 * 180.21424 * 10 9 7 12 12 C 1.40042 * 120.10143 * 359.52097 * 11 10 9 13 13 C 1.47585 * 119.89546 * 180.23424 * 12 11 10 14 14 O 1.21589 * 120.00442 * 359.97438 * 13 12 11 15 15 N 1.34784 * 119.99852 * 179.97438 * 13 12 11 16 16 C 1.39292 * 119.99728 * 174.01784 * 15 13 12 17 17 C 1.38960 * 119.68133 * 185.63782 * 16 15 13 18 18 C 1.38637 * 119.06557 * 180.02562 * 17 16 15 19 19 F 1.35097 * 120.77897 * 179.97438 * 18 17 16 20 20 C 1.39131 * 118.44162 * 359.97438 * 18 17 16 21 21 C 1.37965 * 119.28657 * 0.02562 * 20 18 17 22 22 N 1.31976 * 120.87635 * 359.72710 * 21 20 18 23 23 C 1.40036 * 120.20766 * 0.25376 * 12 11 10 24 24 C 1.36306 * 120.10733 * 359.97438 * 23 12 11 25 25 H 0.97000 * 120.00505 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.05918 * 359.97438 * 10 9 7 27 27 H 1.07995 * 119.95020 * 179.79811 * 11 10 9 28 28 H 0.96996 * 119.99939 * 354.02043 * 15 13 12 29 29 H 1.08001 * 120.46883 * 0.02562 * 17 16 15 30 30 H 1.07999 * 120.35411 * 179.97438 * 20 18 17 31 31 H 1.08001 * 119.56127 * 179.97438 * 21 20 18 32 32 H 1.07999 * 119.95234 * 179.97438 * 23 12 11 33 33 H 1.07999 * 120.05910 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.3824 2.1075 -1.3947 5 1 1.4945 2.6199 0.8028 6 1 3.5867 1.4121 0.5920 7 6 2.0076 -1.2144 -0.0005 8 1 2.9459 -1.2964 0.5279 9 6 1.4874 -2.3291 -0.6915 10 6 0.5357 -2.1454 -1.7141 11 6 0.0327 -3.2257 -2.3759 12 6 0.4678 -4.5157 -2.0477 13 6 -0.0761 -5.6817 -2.7707 14 8 -0.9010 -5.5215 -3.6496 15 7 0.3416 -6.9241 -2.4568 16 6 -0.2601 -8.0317 -3.0498 17 6 0.0931 -9.3104 -2.6361 18 6 -0.5133 -10.4036 -3.2354 19 9 -0.1956 -11.6621 -2.8604 20 6 -1.4567 -10.1744 -4.2320 21 6 -1.7572 -8.8767 -4.5911 22 7 -1.1665 -7.8559 -3.9988 23 6 1.4170 -4.7028 -1.0353 24 6 1.9222 -3.6289 -0.3648 25 1 -0.4851 0.8400 0.0004 26 1 0.2024 -1.1507 -1.9706 27 1 -0.6993 -3.0862 -3.1577 28 1 1.0611 -7.0470 -1.8180 29 1 0.8296 -9.4506 -1.8588 30 1 -1.9478 -11.0034 -4.7197 31 1 -2.4885 -8.6936 -5.3645 32 1 1.7493 -5.6995 -0.7852 33 1 2.6546 -3.7741 0.4156 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001586851365.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:32 Heat of formation + Delta-G solvation = -17.915450 kcal Electronic energy + Delta-G solvation = -20569.541125 eV Core-core repulsion = 17088.656512 eV Total energy + Delta-G solvation = -3480.884613 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.17881 -40.52244 -38.72288 -37.13505 -34.53367 -34.04622 -31.90760 -30.76288 -29.93580 -29.36438 -26.14520 -23.88927 -23.55709 -21.90945 -20.95499 -19.87885 -18.48188 -17.65592 -17.30028 -16.49736 -16.10310 -15.94665 -15.55541 -15.26765 -14.71354 -14.41976 -14.07996 -13.98609 -13.75934 -13.35059 -13.14006 -12.84501 -12.28924 -12.14715 -11.87689 -11.48501 -11.33477 -11.06857 -10.78858 -10.51214 -10.22647 -9.77463 -9.62736 -9.60149 -9.28617 -8.73830 -8.27848 -7.80058 -7.78369 -7.27385 -4.66752 0.97809 1.07633 2.17636 2.82406 2.90749 2.93274 2.96473 3.12294 3.56330 3.64946 3.91618 3.95693 4.41079 4.45707 4.80306 4.88796 5.02137 5.45626 5.49751 5.64869 5.79110 5.84704 5.94551 6.20251 6.33380 6.66403 6.72766 6.81153 6.94076 7.00334 7.31495 7.43464 7.53450 7.72651 7.85626 7.92848 8.22667 8.29109 8.50396 8.65635 8.92167 9.65114 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.047612 B = 0.003018 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.948320 B = 9275.765837 C = 9728.013908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.085 3.915 3 Si 0.905 3.095 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.441 4.441 8 H 0.090 0.910 9 C 0.129 3.871 10 C -0.199 4.199 11 C -0.024 4.024 12 C -0.298 4.298 13 C 0.560 3.440 14 O -0.503 6.503 15 N -0.663 5.663 16 C 0.407 3.593 17 C -0.260 4.260 18 C 0.170 3.830 19 F -0.130 7.130 20 C -0.258 4.258 21 C 0.165 3.835 22 N -0.482 5.482 23 C -0.044 4.044 24 C -0.237 4.237 25 H 0.292 0.708 26 H 0.108 0.892 27 H 0.101 0.899 28 H 0.415 0.585 29 H 0.146 0.854 30 H 0.143 0.857 31 H 0.166 0.834 32 H 0.088 0.912 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.482 -11.559 -2.913 11.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.179 1.179 7 C -0.466 4.466 8 H 0.108 0.892 9 C 0.125 3.875 10 C -0.218 4.218 11 C -0.043 4.043 12 C -0.303 4.303 13 C 0.355 3.645 14 O -0.377 6.377 15 N -0.308 5.308 16 C 0.174 3.826 17 C -0.285 4.285 18 C 0.143 3.857 19 F -0.109 7.109 20 C -0.280 4.280 21 C 0.006 3.994 22 N -0.197 5.197 23 C -0.063 4.063 24 C -0.257 4.257 25 H 0.103 0.897 26 H 0.126 0.874 27 H 0.119 0.881 28 H 0.253 0.747 29 H 0.163 0.837 30 H 0.161 0.839 31 H 0.184 0.816 32 H 0.106 0.894 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.513 -10.343 -3.675 10.988 hybrid contribution 0.960 -0.535 0.817 1.369 sum 0.447 -10.878 -2.858 11.256 Atomic orbital electron populations 1.69830 1.08510 1.31035 1.26546 1.26174 0.94462 1.02275 0.91275 0.86335 0.81189 0.79850 0.79885 1.18612 1.19873 1.17919 1.19876 1.06104 0.93970 1.26691 0.89172 1.17711 0.88710 0.91735 0.89300 1.20739 1.03959 0.97319 0.99755 1.20386 0.95972 0.91272 0.96656 1.18689 1.11495 0.91799 1.08300 1.18878 0.81228 0.81689 0.82706 1.90759 1.32049 1.84529 1.30325 1.43953 1.37808 1.04701 1.44376 1.18367 0.89400 0.85718 0.89071 1.21386 1.08478 0.91054 1.07583 1.17564 0.94859 0.78883 0.94363 1.91524 1.91520 1.37598 1.90238 1.22007 1.03407 1.00244 1.02381 1.22648 0.94953 0.86320 0.95514 1.67906 1.08978 1.34321 1.08538 1.20340 0.94941 0.96697 0.94314 1.20581 1.07801 0.92516 1.04765 0.89676 0.87398 0.88066 0.74697 0.83661 0.83919 0.81645 0.89400 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -17.31 11.83 55.56 0.66 -16.65 16 2 C 0.08 1.91 4.73 -17.31 -0.08 1.83 16 3 Si 0.90 16.55 29.67 -169.99 -5.04 11.50 16 4 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 5 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 6 H -0.26 -4.61 7.11 56.52 0.40 -4.21 16 7 C -0.44 -10.54 8.94 -37.75 -0.34 -10.87 16 8 H 0.09 2.04 8.03 -52.49 -0.42 1.62 16 9 C 0.13 3.16 5.59 -106.80 -0.60 2.56 16 10 C -0.20 -4.91 8.76 -39.27 -0.34 -5.25 16 11 C -0.02 -0.56 9.52 -39.60 -0.38 -0.94 16 12 C -0.30 -6.62 5.89 -104.73 -0.62 -7.24 16 13 C 0.56 11.82 7.72 -12.44 -0.10 11.72 16 14 O -0.50 -12.03 14.59 5.29 0.08 -11.96 16 15 N -0.66 -11.13 5.32 -12.38 -0.07 -11.19 16 16 C 0.41 6.53 7.42 -154.79 -1.15 5.39 16 17 C -0.26 -3.32 9.94 -39.17 -0.39 -3.71 16 18 C 0.17 2.06 7.39 -39.10 -0.29 1.77 16 19 F -0.13 -1.51 17.30 2.25 0.04 -1.47 16 20 C -0.26 -2.84 10.10 -39.35 -0.40 -3.23 16 21 C 0.16 2.12 11.17 -17.59 -0.20 1.92 16 22 N -0.48 -8.33 7.88 -12.42 -0.10 -8.43 16 23 C -0.04 -0.90 9.47 -39.60 -0.37 -1.27 16 24 C -0.24 -5.28 9.73 -39.27 -0.38 -5.66 16 25 H 0.29 6.08 8.29 -40.82 -0.34 5.74 16 26 H 0.11 2.70 6.49 -52.49 -0.34 2.36 16 27 H 0.10 2.38 7.63 -52.49 -0.40 1.98 16 28 H 0.42 5.61 6.72 -40.82 -0.27 5.34 16 29 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16 30 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.17 1.62 8.06 -52.49 -0.42 1.19 16 32 H 0.09 1.42 6.39 -52.49 -0.34 1.08 16 33 H 0.10 2.00 8.06 -52.49 -0.42 1.57 16 LS Contribution 300.05 15.07 4.52 4.52 Total: -1.00 -28.94 300.05 -8.14 -37.08 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -2.60 Total: 9.58 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -5.63 Total: -12.98 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.49 Total: -36.28 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.08 Total: -11.96 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 16.55 SS G_CDS: -5.04 Total: 11.50 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.94 -8.14 -37.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586851365.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.162 kcal (2) G-P(sol) polarization free energy of solvation -28.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds