Wall clock time and date at job start Tue Mar 31 2020 05:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30637 * 1 3 3 Si 1.86803 * 119.99862 * 2 1 4 4 H 1.48502 * 109.47569 * 274.99125 * 3 2 1 5 5 H 1.48500 * 109.46990 * 34.98988 * 3 2 1 6 6 H 1.48502 * 109.47248 * 154.98715 * 3 2 1 7 7 C 1.40234 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99915 * 214.40314 * 7 2 1 9 9 C 1.41085 * 120.00119 * 34.40720 * 7 2 1 10 10 C 1.40901 * 120.09859 * 20.64789 * 9 7 2 11 11 C 1.36308 * 119.89281 * 180.21424 * 10 9 7 12 12 C 1.40042 * 120.10143 * 359.52097 * 11 10 9 13 13 C 1.47585 * 119.89546 * 180.23424 * 12 11 10 14 14 O 1.21589 * 120.00442 * 359.97438 * 13 12 11 15 15 N 1.34784 * 119.99852 * 179.97438 * 13 12 11 16 16 C 1.39292 * 119.99728 * 174.01784 * 15 13 12 17 17 C 1.38960 * 119.68133 * 185.63782 * 16 15 13 18 18 C 1.38637 * 119.06557 * 180.02562 * 17 16 15 19 19 F 1.35097 * 120.77897 * 179.97438 * 18 17 16 20 20 C 1.39131 * 118.44162 * 359.97438 * 18 17 16 21 21 C 1.37965 * 119.28657 * 0.02562 * 20 18 17 22 22 N 1.31976 * 120.87635 * 359.72710 * 21 20 18 23 23 C 1.40036 * 120.20766 * 0.25376 * 12 11 10 24 24 C 1.36306 * 120.10733 * 359.97438 * 23 12 11 25 25 H 0.97000 * 120.00505 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.05918 * 359.97438 * 10 9 7 27 27 H 1.07995 * 119.95020 * 179.79811 * 11 10 9 28 28 H 0.96996 * 119.99939 * 354.02043 * 15 13 12 29 29 H 1.08001 * 120.46883 * 0.02562 * 17 16 15 30 30 H 1.07999 * 120.35411 * 179.97438 * 20 18 17 31 31 H 1.08001 * 119.56127 * 179.97438 * 21 20 18 32 32 H 1.07999 * 119.95234 * 179.97438 * 23 12 11 33 33 H 1.07999 * 120.05910 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.3824 2.1075 -1.3947 5 1 1.4945 2.6199 0.8028 6 1 3.5867 1.4121 0.5920 7 6 2.0076 -1.2144 -0.0005 8 1 2.9459 -1.2964 0.5279 9 6 1.4874 -2.3291 -0.6915 10 6 0.5357 -2.1454 -1.7141 11 6 0.0327 -3.2257 -2.3759 12 6 0.4678 -4.5157 -2.0477 13 6 -0.0761 -5.6817 -2.7707 14 8 -0.9010 -5.5215 -3.6496 15 7 0.3416 -6.9241 -2.4568 16 6 -0.2601 -8.0317 -3.0498 17 6 0.0931 -9.3104 -2.6361 18 6 -0.5133 -10.4036 -3.2354 19 9 -0.1956 -11.6621 -2.8604 20 6 -1.4567 -10.1744 -4.2320 21 6 -1.7572 -8.8767 -4.5911 22 7 -1.1665 -7.8559 -3.9988 23 6 1.4170 -4.7028 -1.0353 24 6 1.9222 -3.6289 -0.3648 25 1 -0.4851 0.8400 0.0004 26 1 0.2024 -1.1507 -1.9706 27 1 -0.6993 -3.0862 -3.1577 28 1 1.0611 -7.0470 -1.8180 29 1 0.8296 -9.4506 -1.8588 30 1 -1.9478 -11.0034 -4.7197 31 1 -2.4885 -8.6936 -5.3645 32 1 1.7493 -5.6995 -0.7852 33 1 2.6546 -3.7741 0.4156 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001586851365.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:32 Heat of formation + Delta-G solvation = -33.633887 kcal Electronic energy + Delta-G solvation = -20570.222728 eV Core-core repulsion = 17088.656512 eV Total energy + Delta-G solvation = -3481.566216 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.10121 -41.76025 -40.18868 -38.80844 -35.94901 -35.75127 -32.95073 -32.30115 -31.59458 -30.81510 -27.82792 -25.05888 -24.75308 -23.47803 -22.63385 -21.39062 -19.72876 -19.33791 -18.66234 -17.68098 -17.22110 -17.00860 -16.91317 -16.53780 -16.10722 -15.88193 -15.73218 -15.16463 -15.03260 -14.68185 -14.47738 -14.46148 -13.98464 -13.84016 -13.22328 -12.92978 -12.80056 -12.66378 -12.34913 -11.84733 -11.81366 -11.37908 -11.13662 -11.01474 -10.61231 -10.12969 -9.65351 -9.58263 -9.36645 -8.97027 -6.46909 -0.08959 0.06544 0.52267 1.15459 1.34413 1.42693 1.53117 1.88027 2.05527 2.13020 2.59728 2.85112 2.97704 3.45403 3.66330 3.81903 3.92498 3.98865 4.29864 4.33267 4.40532 4.61356 4.78888 4.89016 4.92367 4.98745 5.12599 5.23613 5.27900 5.55256 5.69797 5.77149 5.88431 5.98930 6.15557 6.32297 6.50049 6.71344 6.87098 7.04309 7.41789 7.99589 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.047612 B = 0.003018 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.948320 B = 9275.765837 C = 9728.013908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.048 3.952 3 Si 0.979 3.021 4 H -0.263 1.263 5 H -0.263 1.263 6 H -0.248 1.248 7 C -0.468 4.468 8 H 0.097 0.903 9 C 0.102 3.898 10 C -0.219 4.219 11 C -0.038 4.038 12 C -0.309 4.309 13 C 0.564 3.436 14 O -0.540 6.540 15 N -0.653 5.653 16 C 0.375 3.625 17 C -0.244 4.244 18 C 0.165 3.835 19 F -0.124 7.124 20 C -0.232 4.232 21 C 0.151 3.849 22 N -0.530 5.530 23 C -0.032 4.032 24 C -0.251 4.251 25 H 0.301 0.699 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.429 0.571 29 H 0.172 0.828 30 H 0.179 0.821 31 H 0.190 0.810 32 H 0.136 0.864 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.404 -13.572 -2.491 13.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.176 4.176 3 Si 0.798 3.202 4 H -0.188 1.188 5 H -0.188 1.188 6 H -0.171 1.171 7 C -0.493 4.493 8 H 0.115 0.885 9 C 0.099 3.901 10 C -0.239 4.239 11 C -0.057 4.057 12 C -0.313 4.313 13 C 0.358 3.642 14 O -0.417 6.417 15 N -0.300 5.300 16 C 0.144 3.856 17 C -0.269 4.269 18 C 0.137 3.863 19 F -0.103 7.103 20 C -0.254 4.254 21 C -0.006 4.006 22 N -0.246 5.246 23 C -0.050 4.050 24 C -0.270 4.270 25 H 0.113 0.887 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.270 0.730 29 H 0.190 0.810 30 H 0.196 0.804 31 H 0.207 0.793 32 H 0.154 0.846 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.416 -12.424 -3.240 12.847 hybrid contribution 0.585 -0.139 0.625 0.867 sum 1.000 -12.563 -2.615 12.871 Atomic orbital electron populations 1.69842 1.10072 1.32534 1.27081 1.27041 0.95025 1.05381 0.90171 0.85230 0.79948 0.75296 0.79708 1.18801 1.18766 1.17105 1.20174 1.06655 0.94979 1.27530 0.88511 1.18062 0.89093 0.93338 0.89618 1.20673 1.05362 0.96835 1.00996 1.20460 0.96167 0.92408 0.96670 1.18940 1.11804 0.91672 1.08888 1.18667 0.80672 0.82805 0.82020 1.90731 1.33714 1.85465 1.31833 1.43508 1.38114 1.03682 1.44660 1.18490 0.90627 0.86236 0.90234 1.21528 1.08173 0.89761 1.07411 1.17655 0.95071 0.78940 0.94604 1.91548 1.91478 1.37057 1.90195 1.22350 1.01732 1.00464 1.00827 1.23081 0.95286 0.86335 0.95925 1.67756 1.10153 1.36971 1.09753 1.20700 0.93223 0.98580 0.92520 1.20864 1.08436 0.92098 1.05583 0.88728 0.88986 0.89065 0.72996 0.81023 0.80397 0.79327 0.84641 0.86486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -37.28 11.83 21.87 0.26 -37.03 16 2 C 0.05 2.18 4.73 85.36 0.40 2.59 16 3 Si 0.98 33.88 29.67 68.60 2.04 35.91 16 4 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 5 H -0.26 -8.59 7.11 99.48 0.71 -7.88 16 6 H -0.25 -8.20 7.11 99.48 0.71 -7.50 16 7 C -0.47 -22.74 8.94 23.45 0.21 -22.53 16 8 H 0.10 4.41 8.03 -2.91 -0.02 4.38 16 9 C 0.10 5.14 5.59 -21.28 -0.12 5.02 16 10 C -0.22 -11.38 8.76 22.47 0.20 -11.18 16 11 C -0.04 -1.88 9.52 22.26 0.21 -1.67 16 12 C -0.31 -13.83 5.89 -19.94 -0.12 -13.95 16 13 C 0.56 23.96 7.72 86.71 0.67 24.63 16 14 O -0.54 -26.61 14.59 -4.00 -0.06 -26.67 16 15 N -0.65 -21.13 5.32 -311.34 -1.66 -22.79 16 16 C 0.38 11.53 7.42 132.92 0.99 12.51 16 17 C -0.24 -5.55 9.94 22.54 0.22 -5.32 16 18 C 0.16 3.42 7.39 22.58 0.17 3.59 16 19 F -0.12 -2.43 17.30 44.97 0.78 -1.65 16 20 C -0.23 -4.31 10.10 22.42 0.23 -4.09 16 21 C 0.15 3.61 11.17 84.61 0.95 4.55 16 22 N -0.53 -17.98 7.88 -193.21 -1.52 -19.50 16 23 C -0.03 -1.25 9.47 22.26 0.21 -1.04 16 24 C -0.25 -11.04 9.73 22.47 0.22 -10.82 16 25 H 0.30 12.84 8.29 -92.71 -0.77 12.07 16 26 H 0.09 4.92 6.49 -2.91 -0.02 4.90 16 27 H 0.09 4.59 7.63 -2.91 -0.02 4.57 16 28 H 0.43 10.59 6.72 -92.71 -0.62 9.97 16 29 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 30 H 0.18 2.03 8.06 -2.91 -0.02 2.00 16 31 H 0.19 3.33 8.06 -2.91 -0.02 3.31 16 32 H 0.14 3.94 6.39 -2.91 -0.02 3.92 16 33 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -65.54 300.05 4.82 -60.72 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.55 Total: 28.74 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: 4.43 Total: -17.73 kcal Atomic # 7 Polarization: -76.39 SS G_CDS: -2.92 Total: -79.32 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.06 Total: -26.67 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.78 Total: -1.65 kcal Atomic # 14 Polarization: 33.88 SS G_CDS: 2.04 Total: 35.91 kcal Total: -65.54 4.82 -60.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586851365.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.084 kcal (2) G-P(sol) polarization free energy of solvation -65.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds