Wall clock time and date at job start Tue Mar 31 2020 05:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47280 * 2 1 4 4 C 1.36936 * 120.00110 * 96.85780 * 3 2 1 5 5 H 1.07996 * 120.00189 * 159.88516 * 4 3 2 6 6 C 1.38811 * 119.99704 * 339.88207 * 4 3 2 7 7 N 1.31618 * 120.00502 * 356.15561 * 6 4 3 8 8 Si 1.86805 * 119.99947 * 176.15239 * 6 4 3 9 9 H 1.48502 * 109.47234 * 90.00078 * 8 6 4 10 10 H 1.48491 * 109.47521 * 209.99969 * 8 6 4 11 11 H 1.48503 * 109.47170 * 330.00358 * 8 6 4 12 12 C 1.46502 * 120.00018 * 276.85801 * 3 2 1 13 13 C 1.50702 * 109.46960 * 270.89308 * 12 3 2 14 14 S 1.71982 * 127.27183 * 278.75396 * 13 12 3 15 15 N 1.69459 * 96.13137 * 179.97438 * 14 13 12 16 16 C 1.29842 * 107.90059 * 0.02562 * 15 14 13 17 17 O 1.35804 * 121.61620 * 180.27515 * 16 15 14 18 18 C 1.42898 * 116.99695 * 359.70927 * 17 16 15 19 19 C 1.38038 * 127.26754 * 98.72447 * 13 12 3 20 20 C 1.46996 * 123.13166 * 0.04813 * 19 13 12 21 21 O 1.21558 * 119.99721 * 263.47180 * 20 19 13 22 22 O 1.34792 * 119.99913 * 83.46928 * 20 19 13 23 23 H 1.08998 * 109.47262 * 188.30721 * 1 2 3 24 24 H 1.09008 * 109.47014 * 308.30705 * 1 2 3 25 25 H 1.08996 * 109.47149 * 68.30437 * 1 2 3 26 26 H 1.08998 * 109.47182 * 239.99953 * 2 1 3 27 27 H 1.09000 * 109.47397 * 120.00113 * 2 1 3 28 28 H 0.97000 * 120.00227 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.47237 * 150.89746 * 12 3 2 30 30 H 1.08995 * 109.47272 * 30.89144 * 12 3 2 31 31 H 1.09000 * 109.46818 * 180.02562 * 18 17 16 32 32 H 1.08995 * 109.47602 * 300.00500 * 18 17 16 33 33 H 1.09003 * 109.46940 * 60.00712 * 18 17 16 34 34 H 0.96705 * 116.99606 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3801 1.9795 1.1774 5 1 3.0279 2.8435 1.1673 6 6 1.9140 1.4755 2.3839 7 7 1.0647 0.4701 2.3930 8 14 2.4924 2.2241 3.9947 9 1 1.5764 3.3255 4.3858 10 1 2.4935 1.1821 5.0526 11 1 3.8671 2.7599 3.8261 12 6 2.1197 2.1223 -1.2597 13 6 3.4766 1.8886 -1.8722 14 16 4.9518 2.6742 -1.4666 15 7 5.9138 1.8422 -2.5864 16 6 5.1497 1.0138 -3.2312 17 8 5.6416 0.1973 -4.1985 18 6 7.0391 0.2945 -4.4808 19 6 3.7981 0.9982 -2.8769 20 6 2.8103 0.1165 -3.5154 21 8 2.6830 -1.0305 -3.1337 22 8 2.0457 0.5800 -4.5241 23 1 -0.3634 -1.0169 0.1485 24 1 -0.3633 0.6371 0.8065 25 1 -0.3633 0.3799 -0.9548 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 0.7387 0.1181 3.2361 29 1 1.9867 3.1868 -1.0667 30 1 1.3468 1.7783 -1.9468 31 1 7.2999 -0.4095 -5.2709 32 1 7.2746 1.3080 -4.8052 33 1 7.6085 0.0593 -3.5815 34 1 1.4100 -0.0368 -4.9122 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596200336.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:20 Heat of formation + Delta-G solvation = -51.749421 kcal Electronic energy + Delta-G solvation = -21124.395235 eV Core-core repulsion = 17765.114632 eV Total energy + Delta-G solvation = -3359.280603 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.43155 -39.20774 -36.88189 -35.86294 -35.70094 -32.37358 -30.78268 -29.45209 -27.98192 -26.46662 -24.24120 -23.11854 -22.37612 -20.52336 -19.55638 -18.09256 -17.76282 -17.22737 -16.80716 -16.07649 -15.79854 -15.27573 -14.84457 -14.59932 -13.81800 -13.66740 -13.34124 -13.21045 -12.89431 -12.17764 -12.12241 -11.78422 -11.49429 -11.28437 -11.08000 -10.97772 -10.94791 -10.83158 -10.65230 -10.51410 -10.21159 -10.09884 -9.85414 -9.55477 -9.14542 -8.54017 -8.10180 -7.01799 -5.84597 -3.36851 0.89953 1.61708 1.93014 2.36850 2.48444 3.23833 3.31289 3.37917 3.38832 3.47307 4.35562 4.95618 5.14811 5.23736 5.26896 5.27926 5.48872 5.52415 5.54014 5.81313 6.11639 6.27558 6.32839 6.56938 6.66321 6.94359 7.06162 7.11903 7.17755 7.54010 7.75992 8.02264 8.13371 8.27966 9.08034 9.63296 10.08170 11.12829 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.019256 B = 0.006362 C = 0.005249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.720842 B = 4400.264321 C = 5332.694281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.158 3.842 3 N -0.573 5.573 4 C -0.264 4.264 5 H 0.075 0.925 6 C 0.007 3.993 7 N -0.895 5.895 8 Si 0.912 3.088 9 H -0.285 1.285 10 H -0.289 1.289 11 H -0.278 1.278 12 C 0.202 3.798 13 C -0.093 4.093 14 S 0.345 5.655 15 N -0.559 5.559 16 C 0.345 3.655 17 O -0.299 6.299 18 C 0.040 3.960 19 C -0.231 4.231 20 C 0.572 3.428 21 O -0.492 6.492 22 O -0.510 6.510 23 H 0.025 0.975 24 H 0.084 0.916 25 H 0.003 0.997 26 H 0.011 0.989 27 H 0.097 0.903 28 H 0.255 0.745 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.921 2.451 -11.782 13.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.033 3.967 3 N -0.291 5.291 4 C -0.393 4.393 5 H 0.093 0.907 6 C -0.191 4.191 7 N -0.539 5.539 8 Si 0.741 3.259 9 H -0.212 1.212 10 H -0.215 1.215 11 H -0.203 1.203 12 C 0.070 3.930 13 C -0.229 4.229 14 S 0.495 5.505 15 N -0.398 5.398 16 C 0.131 3.869 17 O -0.205 6.205 18 C -0.056 4.056 19 C -0.251 4.251 20 C 0.411 3.589 21 O -0.378 6.378 22 O -0.322 6.322 23 H 0.045 0.955 24 H 0.103 0.897 25 H 0.022 0.978 26 H 0.030 0.970 27 H 0.115 0.885 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.116 0.884 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 6.526 3.307 -10.619 12.896 hybrid contribution -0.961 -1.344 -0.223 1.667 sum 5.566 1.963 -10.842 12.344 Atomic orbital electron populations 1.22164 0.98737 0.99667 0.98802 1.20973 0.92717 0.83621 0.99342 1.44287 1.73300 1.11304 1.00256 1.19314 1.24707 1.11756 0.83525 0.90708 1.25003 0.97498 0.98356 0.98257 1.70150 1.32540 1.26226 1.24986 0.86150 0.78505 0.78305 0.82952 1.21194 1.21501 1.20284 1.19514 0.86160 0.98178 0.89108 1.28320 1.06951 0.94816 0.92780 1.83941 0.92550 1.38154 1.35874 1.76039 1.28234 1.19135 1.16403 1.19555 0.88491 0.89764 0.89050 1.86237 1.27336 1.56312 1.50633 1.22923 0.78323 1.02739 1.01583 1.18101 0.91136 1.09139 1.06680 1.19638 0.78109 0.84928 0.76218 1.90918 1.66328 1.19137 1.61409 1.84681 1.50437 1.48783 1.48249 0.95546 0.89749 0.97805 0.97040 0.88544 0.93447 0.90142 0.91531 0.88376 0.92210 0.92147 0.73381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 9.47 37.16 0.35 -2.75 16 2 C 0.16 3.85 5.58 -4.04 -0.02 3.83 16 3 N -0.57 -13.49 2.52 -174.61 -0.44 -13.93 16 4 C -0.26 -6.62 9.72 -15.06 -0.15 -6.77 16 5 H 0.08 1.79 7.83 -52.49 -0.41 1.38 16 6 C 0.01 0.19 5.26 -17.43 -0.09 0.10 16 7 N -0.89 -23.93 7.98 55.49 0.44 -23.49 16 8 Si 0.91 20.60 29.56 -169.99 -5.02 15.57 16 9 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 C 0.20 3.93 6.08 -5.19 -0.03 3.90 16 13 C -0.09 -1.74 6.25 -34.38 -0.21 -1.96 16 14 S 0.34 5.87 23.69 -107.50 -2.55 3.32 16 15 N -0.56 -9.80 11.05 29.44 0.33 -9.47 16 16 C 0.35 6.22 7.44 -17.83 -0.13 6.08 16 17 O -0.30 -4.88 10.21 -19.13 -0.20 -5.08 16 18 C 0.04 0.47 10.46 101.05 1.06 1.53 16 19 C -0.23 -4.33 5.74 -105.86 -0.61 -4.94 16 20 C 0.57 10.42 6.93 34.28 0.24 10.65 16 21 O -0.49 -10.26 16.73 -19.31 -0.32 -10.59 16 22 O -0.51 -7.18 13.44 -40.74 -0.55 -7.73 16 23 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.08 2.14 6.46 -51.92 -0.34 1.81 16 25 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 26 H 0.01 0.28 6.84 -51.93 -0.36 -0.08 16 27 H 0.10 2.64 5.96 -51.93 -0.31 2.33 16 28 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 29 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 30 H 0.07 1.25 7.58 -51.93 -0.39 0.86 16 31 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 34 H 0.41 3.68 9.11 45.56 0.42 4.09 16 LS Contribution 310.23 15.07 4.68 4.68 Total: -1.00 -30.31 310.23 -6.29 -36.60 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -3.05 Total: 0.43 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 0.40 Total: 9.68 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.33 Total: -46.89 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -1.07 Total: -23.39 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 5.87 SS G_CDS: -2.55 Total: 3.32 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.31 -6.29 -36.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596200336.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.147 kcal (2) G-P(sol) polarization free energy of solvation -30.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds