Wall clock time and date at job start Tue Mar 31 2020 05:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47280 * 2 1 4 4 C 1.36936 * 120.00110 * 96.85780 * 3 2 1 5 5 H 1.07996 * 120.00189 * 159.88516 * 4 3 2 6 6 C 1.38811 * 119.99704 * 339.88207 * 4 3 2 7 7 N 1.31618 * 120.00502 * 356.15561 * 6 4 3 8 8 Si 1.86805 * 119.99947 * 176.15239 * 6 4 3 9 9 H 1.48502 * 109.47234 * 90.00078 * 8 6 4 10 10 H 1.48491 * 109.47521 * 209.99969 * 8 6 4 11 11 H 1.48503 * 109.47170 * 330.00358 * 8 6 4 12 12 C 1.46502 * 120.00018 * 276.85801 * 3 2 1 13 13 C 1.50702 * 109.46960 * 270.89308 * 12 3 2 14 14 S 1.71982 * 127.27183 * 278.75396 * 13 12 3 15 15 N 1.69459 * 96.13137 * 179.97438 * 14 13 12 16 16 C 1.29842 * 107.90059 * 0.02562 * 15 14 13 17 17 O 1.35804 * 121.61620 * 180.27515 * 16 15 14 18 18 C 1.42898 * 116.99695 * 359.70927 * 17 16 15 19 19 C 1.38038 * 127.26754 * 98.72447 * 13 12 3 20 20 C 1.46996 * 123.13166 * 0.04813 * 19 13 12 21 21 O 1.21558 * 119.99721 * 263.47180 * 20 19 13 22 22 O 1.34792 * 119.99913 * 83.46928 * 20 19 13 23 23 H 1.08998 * 109.47262 * 188.30721 * 1 2 3 24 24 H 1.09008 * 109.47014 * 308.30705 * 1 2 3 25 25 H 1.08996 * 109.47149 * 68.30437 * 1 2 3 26 26 H 1.08998 * 109.47182 * 239.99953 * 2 1 3 27 27 H 1.09000 * 109.47397 * 120.00113 * 2 1 3 28 28 H 0.97000 * 120.00227 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.47237 * 150.89746 * 12 3 2 30 30 H 1.08995 * 109.47272 * 30.89144 * 12 3 2 31 31 H 1.09000 * 109.46818 * 180.02562 * 18 17 16 32 32 H 1.08995 * 109.47602 * 300.00500 * 18 17 16 33 33 H 1.09003 * 109.46940 * 60.00712 * 18 17 16 34 34 H 0.96705 * 116.99606 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3801 1.9795 1.1774 5 1 3.0279 2.8435 1.1673 6 6 1.9140 1.4755 2.3839 7 7 1.0647 0.4701 2.3930 8 14 2.4924 2.2241 3.9947 9 1 1.5764 3.3255 4.3858 10 1 2.4935 1.1821 5.0526 11 1 3.8671 2.7599 3.8261 12 6 2.1197 2.1223 -1.2597 13 6 3.4766 1.8886 -1.8722 14 16 4.9518 2.6742 -1.4666 15 7 5.9138 1.8422 -2.5864 16 6 5.1497 1.0138 -3.2312 17 8 5.6416 0.1973 -4.1985 18 6 7.0391 0.2945 -4.4808 19 6 3.7981 0.9982 -2.8769 20 6 2.8103 0.1165 -3.5154 21 8 2.6830 -1.0305 -3.1337 22 8 2.0457 0.5800 -4.5241 23 1 -0.3634 -1.0169 0.1485 24 1 -0.3633 0.6371 0.8065 25 1 -0.3633 0.3799 -0.9548 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 0.7387 0.1181 3.2361 29 1 1.9867 3.1868 -1.0667 30 1 1.3468 1.7783 -1.9468 31 1 7.2999 -0.4095 -5.2709 32 1 7.2746 1.3080 -4.8052 33 1 7.6085 0.0593 -3.5815 34 1 1.4100 -0.0368 -4.9122 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001596200336.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:20 Heat of formation + Delta-G solvation = -73.161296 kcal Electronic energy + Delta-G solvation = -21125.323723 eV Core-core repulsion = 17765.114632 eV Total energy + Delta-G solvation = -3360.209091 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.78410 -40.51637 -38.42877 -37.39020 -37.03986 -34.02050 -32.51211 -31.17004 -29.25973 -27.89463 -25.87647 -24.77407 -23.73533 -22.30770 -20.95242 -19.47545 -19.11629 -18.71982 -18.43846 -17.36216 -17.17246 -17.04227 -16.22518 -15.84971 -15.54559 -15.38359 -14.74447 -14.65721 -14.24453 -13.91497 -13.56196 -13.31436 -12.99463 -12.76754 -12.67784 -12.57425 -12.45664 -12.36073 -12.14701 -12.10443 -11.89016 -11.64593 -11.62790 -11.43030 -10.63081 -10.43759 -9.44928 -8.87131 -7.75546 -5.30243 -0.53222 0.23830 0.54539 0.96901 1.09844 1.52754 1.54809 1.61904 2.02885 2.18838 2.53024 3.33426 3.58195 3.67873 3.95326 4.13553 4.28117 4.32454 4.42834 4.60469 4.65250 4.70147 4.79755 4.98624 5.06403 5.21010 5.24063 5.46700 5.62018 5.80405 5.93250 6.12320 6.36860 6.91459 7.17048 7.79432 8.22655 9.21391 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.019256 B = 0.006362 C = 0.005249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.720842 B = 4400.264321 C = 5332.694281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.168 3.832 3 N -0.591 5.591 4 C -0.265 4.265 5 H 0.085 0.915 6 C -0.044 4.044 7 N -0.921 5.921 8 Si 0.967 3.033 9 H -0.284 1.284 10 H -0.300 1.300 11 H -0.269 1.269 12 C 0.204 3.796 13 C -0.106 4.106 14 S 0.377 5.623 15 N -0.559 5.559 16 C 0.339 3.661 17 O -0.310 6.310 18 C 0.032 3.968 19 C -0.241 4.241 20 C 0.577 3.423 21 O -0.526 6.526 22 O -0.496 6.496 23 H 0.028 0.972 24 H 0.060 0.940 25 H 0.020 0.980 26 H 0.008 0.992 27 H 0.063 0.937 28 H 0.247 0.753 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.132 0.868 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.826 3.445 -13.149 14.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.044 3.956 3 N -0.310 5.310 4 C -0.394 4.394 5 H 0.102 0.898 6 C -0.239 4.239 7 N -0.567 5.567 8 Si 0.795 3.205 9 H -0.210 1.210 10 H -0.227 1.227 11 H -0.194 1.194 12 C 0.074 3.926 13 C -0.240 4.240 14 S 0.528 5.472 15 N -0.399 5.399 16 C 0.125 3.875 17 O -0.217 6.217 18 C -0.062 4.062 19 C -0.261 4.261 20 C 0.417 3.583 21 O -0.415 6.415 22 O -0.310 6.310 23 H 0.047 0.953 24 H 0.079 0.921 25 H 0.039 0.961 26 H 0.026 0.974 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.116 0.884 30 H 0.091 0.909 31 H 0.150 0.850 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 7.446 4.336 -12.050 14.813 hybrid contribution -1.142 -1.606 -0.026 1.971 sum 6.303 2.730 -12.075 13.892 Atomic orbital electron populations 1.21969 0.97900 0.99365 0.98666 1.20689 0.93304 0.84259 0.97377 1.44290 1.74430 1.10949 1.01377 1.19601 1.24011 1.11685 0.84131 0.89775 1.25668 0.98218 0.99175 1.00869 1.70317 1.34038 1.27570 1.24737 0.85280 0.78358 0.77161 0.79661 1.21040 1.22734 1.19414 1.19592 0.86694 0.98657 0.87689 1.28036 1.07147 0.95287 0.93549 1.83792 0.91238 1.37259 1.34942 1.76019 1.28248 1.19107 1.16566 1.19613 0.88357 0.90032 0.89486 1.86239 1.29679 1.55843 1.49901 1.23263 0.76031 1.04364 1.02524 1.18376 0.92007 1.08805 1.06918 1.19594 0.78052 0.84232 0.76439 1.90910 1.67477 1.20424 1.62687 1.84621 1.50363 1.49181 1.46807 0.95285 0.92140 0.96052 0.97375 0.91914 0.94359 0.88385 0.90908 0.84971 0.91414 0.92498 0.70634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 9.47 71.98 0.68 -4.84 16 2 C 0.17 8.30 5.58 86.38 0.48 8.78 16 3 N -0.59 -27.49 2.52 -706.36 -1.78 -29.27 16 4 C -0.26 -13.14 9.72 84.03 0.82 -12.32 16 5 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 6 C -0.04 -2.28 5.26 84.86 0.45 -1.83 16 7 N -0.92 -50.28 7.98 21.65 0.17 -50.10 16 8 Si 0.97 42.45 29.56 68.60 2.03 44.48 16 9 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 11 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 12 C 0.20 7.62 6.08 85.63 0.52 8.14 16 13 C -0.11 -3.77 6.25 25.64 0.16 -3.61 16 14 S 0.38 12.10 23.69 -56.49 -1.34 10.76 16 15 N -0.56 -18.51 11.05 -174.74 -1.93 -20.44 16 16 C 0.34 11.61 7.44 85.35 0.63 12.25 16 17 O -0.31 -9.55 10.21 -91.35 -0.93 -10.48 16 18 C 0.03 0.69 10.46 113.37 1.19 1.87 16 19 C -0.24 -8.67 5.74 -20.67 -0.12 -8.79 16 20 C 0.58 20.15 6.93 70.12 0.49 20.63 16 21 O -0.53 -21.56 16.73 19.65 0.33 -21.23 16 22 O -0.50 -12.79 13.44 -57.03 -0.77 -13.56 16 23 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.06 3.10 6.46 -2.38 -0.02 3.08 16 25 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.01 0.40 6.84 -2.39 -0.02 0.38 16 27 H 0.06 3.53 5.96 -2.39 -0.01 3.51 16 28 H 0.25 13.31 8.31 -92.71 -0.77 12.54 16 29 H 0.10 3.29 8.03 -2.39 -0.02 3.27 16 30 H 0.07 2.60 7.58 -2.39 -0.02 2.59 16 31 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 34 H 0.43 6.63 9.11 -74.05 -0.67 5.96 16 Total: -1.00 -64.50 310.23 1.55 -62.95 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: 0.47 Total: 6.62 kcal Atomic # 6 Polarization: 14.98 SS G_CDS: 5.30 Total: 20.27 kcal Atomic # 7 Polarization: -96.28 SS G_CDS: -3.54 Total: -99.82 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -1.37 Total: -45.27 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 16 Polarization: 12.10 SS G_CDS: -1.34 Total: 10.76 kcal Total: -64.50 1.55 -62.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596200336.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.210 kcal (2) G-P(sol) polarization free energy of solvation -64.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds