Wall clock time and date at job start Tue Mar 31 2020 06:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46492 * 120.00236 * 2 1 4 4 C 1.38316 * 119.99440 * 179.72593 * 2 1 3 5 5 N 1.31632 * 127.50817 * 359.70740 * 4 2 1 6 6 C 1.31285 * 116.79332 * 179.78322 * 5 4 2 7 7 C 1.50706 * 121.06418 * 180.25604 * 6 5 4 8 8 N 1.46497 * 109.47115 * 270.27114 * 7 6 5 9 9 C 1.36936 * 120.00239 * 89.99831 * 8 7 6 10 10 H 1.08003 * 119.99909 * 9.54473 * 9 8 7 11 11 C 1.38811 * 120.00159 * 189.55544 * 9 8 7 12 12 N 1.31618 * 120.00111 * 24.80218 * 11 9 8 13 13 Si 1.86800 * 119.99953 * 204.80349 * 11 9 8 14 14 H 1.48496 * 109.47420 * 89.99316 * 13 11 9 15 15 H 1.48495 * 109.47048 * 209.99753 * 13 11 9 16 16 H 1.48506 * 109.47034 * 329.99643 * 13 11 9 17 17 C 1.46504 * 119.99866 * 270.00120 * 8 7 6 18 18 C 1.50697 * 109.47486 * 88.73397 * 17 8 7 19 19 O 1.20827 * 119.99648 * 0.02562 * 18 17 8 20 20 O 1.34223 * 119.99863 * 179.97438 * 18 17 8 21 21 N 1.30130 * 117.87735 * 0.54136 * 6 5 4 22 22 S 1.69953 * 105.76335 * 359.71488 * 21 6 5 23 23 H 1.09000 * 109.47186 * 270.27600 * 1 2 3 24 24 H 1.08998 * 109.47283 * 30.27178 * 1 2 3 25 25 H 1.08998 * 109.47381 * 150.27628 * 1 2 3 26 26 H 1.08999 * 109.47432 * 269.72907 * 3 2 1 27 27 H 1.09004 * 109.47516 * 29.72459 * 3 2 1 28 28 H 1.09003 * 109.47202 * 149.72524 * 3 2 1 29 29 H 1.09002 * 109.46903 * 30.27174 * 7 6 5 30 30 H 1.08998 * 109.47122 * 150.26743 * 7 6 5 31 31 H 0.96997 * 119.99789 * 180.02562 * 12 11 9 32 32 H 1.08998 * 109.46650 * 208.73541 * 17 8 7 33 33 H 1.08996 * 109.46884 * 328.73340 * 17 8 7 34 34 H 0.96707 * 116.99768 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1565 -1.1979 0.0057 5 7 1.6528 -2.4140 0.0169 6 6 2.5090 -3.4092 0.0160 7 6 2.0376 -4.8406 0.0224 8 7 1.8849 -5.2983 1.4056 9 6 0.6872 -5.1413 2.0505 10 1 -0.1857 -4.8246 1.4989 11 6 0.5950 -5.3888 3.4133 12 7 1.6651 -5.2929 4.1735 13 14 -1.0480 -5.8581 4.1682 14 1 -1.2013 -7.3348 4.1416 15 1 -1.1017 -5.3800 5.5731 16 1 -2.1471 -5.2322 3.3900 17 6 3.0137 -5.9240 2.0990 18 6 3.8374 -4.8609 2.7789 19 8 3.5144 -3.6997 2.6935 20 8 4.9292 -5.2040 3.4801 21 7 3.7778 -3.1202 0.0151 22 16 3.8648 -1.4230 0.0073 23 1 -0.3633 0.0050 1.0277 24 1 -0.3634 0.8875 -0.5180 25 1 -0.3634 -0.8924 -0.5095 26 1 2.3834 1.5809 -1.0276 27 1 1.6064 2.0296 0.5096 28 1 3.1478 1.1395 0.5181 29 1 1.0786 -4.9096 -0.4912 30 1 2.7692 -5.4664 -0.4888 31 1 1.6007 -5.4662 5.1257 32 1 2.6386 -6.6252 2.8444 33 1 3.6328 -6.4572 1.3776 34 1 5.4257 -4.4871 3.8982 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598348845.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:13 Heat of formation + Delta-G solvation = 11.151792 kcal Electronic energy + Delta-G solvation = -21400.029985 eV Core-core repulsion = 18075.769735 eV Total energy + Delta-G solvation = -3324.260250 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.089 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.40217 -38.47113 -36.87261 -35.50768 -34.20413 -31.68401 -30.66774 -28.29494 -28.13136 -26.59300 -25.81258 -22.89613 -21.30794 -20.09151 -18.97451 -18.07222 -16.89968 -16.50599 -16.23455 -15.58480 -15.15424 -15.06938 -14.71142 -14.04460 -13.76836 -13.52458 -13.39057 -12.93055 -12.63945 -12.63226 -12.04607 -11.69992 -11.57164 -11.26789 -11.02905 -10.81026 -10.70078 -10.55618 -10.29002 -10.18224 -9.94973 -9.77119 -9.09719 -8.84746 -8.65996 -8.51261 -7.49903 -7.22048 -5.96493 -3.23556 1.51311 1.68884 2.57779 3.07102 3.35834 3.41792 3.44263 3.63880 4.09870 4.38498 4.62583 4.75234 5.12555 5.19490 5.24489 5.31624 5.43989 5.50038 5.65477 5.91061 6.07955 6.33505 6.39069 6.45500 6.67792 6.98951 7.00847 7.06752 7.20655 7.71968 8.01240 8.08940 8.64011 8.98063 9.54313 9.69422 10.04807 11.14245 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.016463 B = 0.007254 C = 0.005871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.368657 B = 3858.909382 C = 4767.724638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.578 5.578 3 C 0.096 3.904 4 C 0.337 3.663 5 N -0.555 5.555 6 C 0.307 3.693 7 C 0.219 3.781 8 N -0.546 5.546 9 C -0.246 4.246 10 H 0.088 0.912 11 C 0.000 4.000 12 N -0.901 5.901 13 Si 0.914 3.086 14 H -0.285 1.285 15 H -0.294 1.294 16 H -0.278 1.278 17 C 0.186 3.814 18 C 0.481 3.519 19 O -0.507 6.507 20 O -0.546 6.546 21 N -0.485 5.485 22 S 0.119 5.881 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.258 0.742 32 H 0.117 0.883 33 H 0.055 0.945 34 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.495 8.105 -8.216 11.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.299 5.299 3 C -0.047 4.047 4 C -0.042 4.042 5 N -0.288 5.288 6 C 0.015 3.985 7 C 0.086 3.914 8 N -0.264 5.264 9 C -0.375 4.375 10 H 0.106 0.894 11 C -0.198 4.198 12 N -0.545 5.545 13 Si 0.744 3.256 14 H -0.212 1.212 15 H -0.221 1.221 16 H -0.204 1.204 17 C 0.057 3.943 18 C 0.320 3.680 19 O -0.391 6.391 20 O -0.356 6.356 21 N -0.317 5.317 22 S 0.253 5.747 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.099 0.901 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.134 0.866 33 H 0.073 0.927 34 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 2.315 8.028 -8.255 11.746 hybrid contribution -1.354 0.645 1.361 2.025 sum 0.961 8.674 -6.894 11.121 Atomic orbital electron populations 1.21692 0.77547 1.02926 1.02038 1.45424 1.05770 1.00682 1.78023 1.21804 0.97176 0.83818 1.01927 1.25138 0.94866 0.89785 0.94422 1.67226 1.36930 0.95938 1.28722 1.24690 0.83908 0.99199 0.90747 1.19969 0.99842 0.83142 0.88419 1.44663 1.08752 1.63985 1.08995 1.19448 0.85499 1.41029 0.91498 0.89431 1.24842 0.97706 1.01514 0.95736 1.69894 1.28574 1.51061 1.04995 0.86084 0.82992 0.78529 0.78001 1.21187 1.22079 1.20375 1.20537 0.86587 0.91978 0.95213 1.24928 0.76344 0.91657 0.75037 1.90508 1.67578 1.21747 1.59315 1.84610 1.41124 1.44557 1.65312 1.77541 1.20616 1.00105 1.33406 1.84349 1.06854 1.09909 1.73540 0.92777 0.91465 0.90108 0.92344 0.90242 0.91098 0.89764 0.91050 0.93199 0.86560 0.92704 0.76696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.31 10.60 59.85 0.63 1.95 16 2 N -0.58 -8.64 3.37 -191.03 -0.64 -9.28 16 3 C 0.10 1.00 10.48 59.84 0.63 1.62 16 4 C 0.34 6.51 7.94 -86.36 -0.69 5.82 16 5 N -0.56 -12.33 10.06 -14.57 -0.15 -12.47 16 6 C 0.31 6.96 5.89 -159.03 -0.94 6.02 16 7 C 0.22 4.70 6.24 -5.19 -0.03 4.66 16 8 N -0.55 -13.41 2.09 -175.98 -0.37 -13.78 16 9 C -0.25 -6.56 9.70 -15.06 -0.15 -6.71 16 10 H 0.09 2.33 7.93 -52.48 -0.42 1.91 16 11 C 0.00 0.00 4.88 -17.43 -0.09 -0.08 16 12 N -0.90 -25.59 9.06 55.49 0.50 -25.09 16 13 Si 0.91 21.57 29.62 -169.99 -5.04 16.54 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 17 C 0.19 4.44 5.57 -5.19 -0.03 4.41 16 18 C 0.48 12.17 6.44 36.00 0.23 12.40 16 19 O -0.51 -14.32 14.46 -18.75 -0.27 -14.59 16 20 O -0.55 -12.05 13.42 -39.24 -0.53 -12.57 16 21 N -0.49 -10.94 11.03 29.54 0.33 -10.61 16 22 S 0.12 2.30 22.61 -107.50 -2.43 -0.13 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 25 H 0.08 1.16 7.73 -51.93 -0.40 0.76 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 28 H 0.07 0.78 7.24 -51.93 -0.38 0.41 16 29 H 0.08 1.68 8.03 -51.93 -0.42 1.26 16 30 H 0.07 1.35 7.90 -51.93 -0.41 0.94 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.12 2.95 6.28 -51.93 -0.33 2.63 16 33 H 0.06 1.14 7.91 -51.93 -0.41 0.73 16 34 H 0.38 6.96 9.10 45.56 0.41 7.37 16 LS Contribution 307.65 15.07 4.64 4.64 Total: -1.00 -35.10 307.65 -7.54 -42.64 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -3.16 Total: 4.63 kcal Atomic # 6 Polarization: 30.51 SS G_CDS: -0.42 Total: 30.09 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -0.33 Total: -71.24 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.80 Total: -27.17 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.04 Total: 16.54 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -2.43 Total: -0.13 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.10 -7.54 -42.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598348845.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.790 kcal (2) G-P(sol) polarization free energy of solvation -35.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds