Wall clock time and date at job start Tue Mar 31 2020 06:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46492 * 120.00236 * 2 1 4 4 C 1.38316 * 119.99440 * 179.72593 * 2 1 3 5 5 N 1.31632 * 127.50817 * 359.70740 * 4 2 1 6 6 C 1.31285 * 116.79332 * 179.78322 * 5 4 2 7 7 C 1.50706 * 121.06418 * 180.25604 * 6 5 4 8 8 N 1.46497 * 109.47115 * 270.27114 * 7 6 5 9 9 C 1.36936 * 120.00239 * 89.99831 * 8 7 6 10 10 H 1.08003 * 119.99909 * 9.54473 * 9 8 7 11 11 C 1.38811 * 120.00159 * 189.55544 * 9 8 7 12 12 N 1.31618 * 120.00111 * 24.80218 * 11 9 8 13 13 Si 1.86800 * 119.99953 * 204.80349 * 11 9 8 14 14 H 1.48496 * 109.47420 * 89.99316 * 13 11 9 15 15 H 1.48495 * 109.47048 * 209.99753 * 13 11 9 16 16 H 1.48506 * 109.47034 * 329.99643 * 13 11 9 17 17 C 1.46504 * 119.99866 * 270.00120 * 8 7 6 18 18 C 1.50697 * 109.47486 * 88.73397 * 17 8 7 19 19 O 1.20827 * 119.99648 * 0.02562 * 18 17 8 20 20 O 1.34223 * 119.99863 * 179.97438 * 18 17 8 21 21 N 1.30130 * 117.87735 * 0.54136 * 6 5 4 22 22 S 1.69953 * 105.76335 * 359.71488 * 21 6 5 23 23 H 1.09000 * 109.47186 * 270.27600 * 1 2 3 24 24 H 1.08998 * 109.47283 * 30.27178 * 1 2 3 25 25 H 1.08998 * 109.47381 * 150.27628 * 1 2 3 26 26 H 1.08999 * 109.47432 * 269.72907 * 3 2 1 27 27 H 1.09004 * 109.47516 * 29.72459 * 3 2 1 28 28 H 1.09003 * 109.47202 * 149.72524 * 3 2 1 29 29 H 1.09002 * 109.46903 * 30.27174 * 7 6 5 30 30 H 1.08998 * 109.47122 * 150.26743 * 7 6 5 31 31 H 0.96997 * 119.99789 * 180.02562 * 12 11 9 32 32 H 1.08998 * 109.46650 * 208.73541 * 17 8 7 33 33 H 1.08996 * 109.46884 * 328.73340 * 17 8 7 34 34 H 0.96707 * 116.99768 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1565 -1.1979 0.0057 5 7 1.6528 -2.4140 0.0169 6 6 2.5090 -3.4092 0.0160 7 6 2.0376 -4.8406 0.0224 8 7 1.8849 -5.2983 1.4056 9 6 0.6872 -5.1413 2.0505 10 1 -0.1857 -4.8246 1.4989 11 6 0.5950 -5.3888 3.4133 12 7 1.6651 -5.2929 4.1735 13 14 -1.0480 -5.8581 4.1682 14 1 -1.2013 -7.3348 4.1416 15 1 -1.1017 -5.3800 5.5731 16 1 -2.1471 -5.2322 3.3900 17 6 3.0137 -5.9240 2.0990 18 6 3.8374 -4.8609 2.7789 19 8 3.5144 -3.6997 2.6935 20 8 4.9292 -5.2040 3.4801 21 7 3.7778 -3.1202 0.0151 22 16 3.8648 -1.4230 0.0073 23 1 -0.3633 0.0050 1.0277 24 1 -0.3634 0.8875 -0.5180 25 1 -0.3634 -0.8924 -0.5095 26 1 2.3834 1.5809 -1.0276 27 1 1.6064 2.0296 0.5096 28 1 3.1478 1.1395 0.5181 29 1 1.0786 -4.9096 -0.4912 30 1 2.7692 -5.4664 -0.4888 31 1 1.6007 -5.4662 5.1257 32 1 2.6386 -6.6252 2.8444 33 1 3.6328 -6.4572 1.3776 34 1 5.4257 -4.4871 3.8982 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598348845.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:13 Heat of formation + Delta-G solvation = -13.462415 kcal Electronic energy + Delta-G solvation = -21401.097338 eV Core-core repulsion = 18075.769735 eV Total energy + Delta-G solvation = -3325.327602 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.089 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.98915 -40.33731 -38.17945 -37.26983 -36.13609 -33.54416 -32.29079 -29.91117 -29.26749 -28.41454 -27.17252 -24.68705 -22.79135 -21.94019 -20.53160 -19.55434 -18.80316 -18.39702 -17.63666 -17.29904 -16.94058 -16.54886 -15.93486 -15.85978 -15.39807 -15.29692 -15.14403 -14.52486 -13.66994 -13.57944 -13.50969 -13.37310 -13.02069 -12.92032 -12.87045 -12.52854 -12.39703 -12.20209 -12.07371 -11.93903 -11.86612 -11.53495 -11.06211 -10.53647 -10.41629 -10.14158 -9.18203 -8.81648 -7.98625 -5.27388 -0.00563 0.21874 1.06444 1.49093 1.50433 1.58883 1.81684 2.02960 2.16553 2.51183 2.81217 3.21475 3.49901 3.61840 4.13594 4.31517 4.40817 4.46431 4.60814 4.66969 4.74583 4.78148 4.86811 4.92234 5.14216 5.17871 5.23508 5.65483 5.80361 5.86784 6.13668 6.20588 6.96259 7.10349 7.61058 7.80148 8.08340 9.10262 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.016463 B = 0.007254 C = 0.005871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.368657 B = 3858.909382 C = 4767.724638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.570 5.570 3 C 0.085 3.915 4 C 0.331 3.669 5 N -0.591 5.591 6 C 0.300 3.700 7 C 0.216 3.784 8 N -0.557 5.557 9 C -0.247 4.247 10 H 0.083 0.917 11 C -0.049 4.049 12 N -0.927 5.927 13 Si 0.975 3.025 14 H -0.277 1.277 15 H -0.306 1.306 16 H -0.273 1.273 17 C 0.186 3.814 18 C 0.481 3.519 19 O -0.541 6.541 20 O -0.539 6.539 21 N -0.518 5.518 22 S 0.143 5.857 23 H 0.046 0.954 24 H 0.115 0.885 25 H 0.061 0.939 26 H 0.085 0.915 27 H 0.112 0.888 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.249 0.751 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.052 9.437 -9.064 13.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.289 5.289 3 C -0.056 4.056 4 C -0.048 4.048 5 N -0.326 5.326 6 C 0.008 3.992 7 C 0.084 3.916 8 N -0.276 5.276 9 C -0.377 4.377 10 H 0.100 0.900 11 C -0.244 4.244 12 N -0.574 5.574 13 Si 0.803 3.197 14 H -0.203 1.203 15 H -0.234 1.234 16 H -0.198 1.198 17 C 0.057 3.943 18 C 0.322 3.678 19 O -0.428 6.428 20 O -0.351 6.351 21 N -0.351 5.351 22 S 0.277 5.723 23 H 0.065 0.935 24 H 0.133 0.867 25 H 0.080 0.920 26 H 0.103 0.897 27 H 0.130 0.870 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.058 0.942 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 1.872 9.407 -9.129 13.242 hybrid contribution -1.171 0.427 1.542 1.983 sum 0.701 9.834 -7.587 12.440 Atomic orbital electron populations 1.21863 0.76289 1.04362 1.02000 1.46036 1.06872 1.00507 1.75509 1.22198 0.97073 0.82331 1.04046 1.25503 0.95241 0.90554 0.93513 1.67227 1.37503 0.96910 1.30999 1.24658 0.84158 0.99609 0.90798 1.20098 1.01068 0.83362 0.87024 1.44658 1.08477 1.64698 1.09726 1.19591 0.86432 1.40077 0.91593 0.89960 1.25512 1.00493 1.02178 0.96188 1.70041 1.30113 1.52753 1.04467 0.85149 0.79798 0.78433 0.76276 1.20283 1.23392 1.19807 1.20539 0.86722 0.91492 0.95553 1.25177 0.76539 0.91373 0.74687 1.90485 1.68632 1.23070 1.60626 1.84549 1.40462 1.45172 1.64875 1.77370 1.20850 1.02430 1.34457 1.84036 1.06539 1.07939 1.73765 0.93523 0.86668 0.92004 0.89663 0.86977 0.91877 0.88957 0.88753 0.94156 0.88276 0.89598 0.74804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.30 10.60 127.77 1.35 3.65 16 2 N -0.57 -15.73 3.37 -758.28 -2.56 -18.29 16 3 C 0.08 1.47 10.48 127.77 1.34 2.81 16 4 C 0.33 12.45 7.94 178.86 1.42 13.87 16 5 N -0.59 -26.13 10.06 -200.01 -2.01 -28.14 16 6 C 0.30 13.56 5.89 139.40 0.82 14.38 16 7 C 0.22 9.19 6.24 85.64 0.53 9.72 16 8 N -0.56 -27.33 2.09 -710.68 -1.49 -28.81 16 9 C -0.25 -13.27 9.70 84.03 0.81 -12.46 16 10 H 0.08 4.40 7.93 -2.91 -0.02 4.38 16 11 C -0.05 -2.67 4.88 84.86 0.41 -2.26 16 12 N -0.93 -53.35 9.06 21.65 0.20 -53.16 16 13 Si 0.97 44.76 29.62 68.60 2.03 46.79 16 14 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 15 H -0.31 -14.57 7.11 99.48 0.71 -13.87 16 16 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 17 C 0.19 8.85 5.57 85.63 0.48 9.32 16 18 C 0.48 24.30 6.44 71.23 0.46 24.76 16 19 O -0.54 -30.71 14.46 21.96 0.32 -30.39 16 20 O -0.54 -23.48 13.42 -51.35 -0.69 -24.17 16 21 N -0.52 -23.22 11.03 -60.44 -0.67 -23.88 16 22 S 0.14 5.39 22.61 -56.49 -1.28 4.11 16 23 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.12 1.59 8.07 -2.39 -0.02 1.57 16 25 H 0.06 1.70 7.73 -2.39 -0.02 1.68 16 26 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.11 1.27 8.07 -2.39 -0.02 1.25 16 28 H 0.06 1.23 7.24 -2.39 -0.02 1.21 16 29 H 0.09 3.67 8.03 -2.39 -0.02 3.65 16 30 H 0.09 3.47 7.90 -2.39 -0.02 3.45 16 31 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 32 H 0.10 5.08 6.28 -2.39 -0.01 5.06 16 33 H 0.09 3.47 7.91 -2.39 -0.02 3.45 16 34 H 0.39 14.22 9.10 -74.05 -0.67 13.55 16 Total: -1.00 -75.93 307.65 1.96 -73.97 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.47 Total: 18.15 kcal Atomic # 6 Polarization: 56.17 SS G_CDS: 7.63 Total: 63.81 kcal Atomic # 7 Polarization: -145.76 SS G_CDS: -6.52 Total: -152.28 kcal Atomic # 8 Polarization: -54.18 SS G_CDS: -0.37 Total: -54.56 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 16 Polarization: 5.39 SS G_CDS: -1.28 Total: 4.11 kcal Total: -75.93 1.96 -73.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598348845.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.507 kcal (2) G-P(sol) polarization free energy of solvation -75.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds