Wall clock time and date at job start Tue Mar 31 2020 05:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47588 * 2 1 4 4 N 1.46902 * 109.46987 * 120.00225 * 2 1 3 5 5 C 1.46905 * 110.99871 * 274.99776 * 4 2 1 6 6 C 1.53000 * 109.47123 * 180.02562 * 5 4 2 7 7 H 1.09002 * 109.47398 * 59.99875 * 6 5 4 8 8 O 1.42903 * 109.46726 * 299.99631 * 6 5 4 9 9 C 1.50699 * 109.47083 * 179.97438 * 6 5 4 10 10 H 1.08000 * 119.99792 * 359.97438 * 9 6 5 11 11 C 1.37878 * 119.99902 * 179.97438 * 9 6 5 12 12 N 1.31515 * 120.00126 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 119.99745 * 180.02562 * 11 9 6 14 14 H 1.48500 * 109.47256 * 90.00491 * 13 11 9 15 15 H 1.48506 * 109.46930 * 210.00332 * 13 11 9 16 16 H 1.48499 * 109.47104 * 330.00193 * 13 11 9 17 17 C 1.50707 * 109.47139 * 239.99758 * 2 1 3 18 18 N 1.29389 * 124.70491 * 284.70007 * 17 2 1 19 19 C 1.30910 * 117.46801 * 179.83030 * 18 17 2 20 20 C 1.36756 * 113.93047 * 0.44902 * 19 18 17 21 21 C 1.46500 * 126.18023 * 179.76680 * 20 19 18 22 22 O 1.21618 * 119.99813 * 180.02562 * 21 20 19 23 23 O 1.34868 * 120.00097 * 359.97438 * 21 20 19 24 24 S 1.70915 * 124.70673 * 105.00224 * 17 2 1 25 25 H 1.08998 * 109.47588 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47094 * 299.99962 * 1 2 3 27 27 H 1.08998 * 109.47074 * 59.99626 * 1 2 3 28 28 H 1.00906 * 111.00466 * 151.04766 * 4 2 1 29 29 H 1.08992 * 109.47078 * 59.99994 * 5 4 2 30 30 H 1.09004 * 109.46829 * 299.99640 * 5 4 2 31 31 H 0.96700 * 114.00234 * 300.00043 * 8 6 5 32 32 H 0.96999 * 120.00073 * 179.97438 * 12 11 9 33 33 H 1.08001 * 123.04088 * 180.21499 * 19 18 17 34 34 H 0.96711 * 117.00393 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0824 0.2226 2.3469 6 6 2.5962 -0.5329 3.5742 7 1 3.5916 -0.9264 3.3683 8 8 1.7097 -1.6129 3.8742 9 6 2.6612 0.4060 4.7512 10 1 2.3661 1.4384 4.6353 11 6 3.0975 -0.0531 5.9759 12 7 3.4574 -1.3101 6.1169 13 14 3.1774 1.1107 7.4350 14 1 1.8837 1.0808 8.1634 15 1 4.2692 0.6859 8.3476 16 1 3.4429 2.4902 6.9539 17 6 2.0323 -0.7105 -1.2305 18 7 2.0234 -1.9938 -1.3954 19 6 2.4926 -2.4607 -2.5248 20 6 2.9430 -1.4937 -3.3805 21 6 3.5231 -1.7149 -4.7074 22 8 3.8890 -0.7677 -5.3767 23 8 3.6522 -2.9691 -5.1864 24 16 2.6996 0.0667 -2.5987 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 2.9173 -1.1206 1.0288 29 1 1.0871 0.6163 2.5525 30 1 2.7589 1.0461 2.1182 31 1 0.8038 -1.3359 4.0682 32 1 3.7647 -1.6330 6.9784 33 1 2.5248 -3.5147 -2.7582 34 1 4.0410 -3.0651 -6.0667 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604342417.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:04 Heat of formation + Delta-G solvation = -93.472842 kcal Electronic energy + Delta-G solvation = -19626.947676 eV Core-core repulsion = 16265.857810 eV Total energy + Delta-G solvation = -3361.089866 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.58123 -39.75519 -37.02888 -36.40910 -35.05699 -32.09769 -31.45362 -29.98542 -27.52606 -26.45656 -24.27297 -23.38814 -22.12907 -20.65892 -19.88729 -18.55827 -17.81741 -17.08993 -16.82430 -16.10838 -15.50691 -15.17885 -14.78136 -14.59996 -14.28909 -13.91350 -13.83517 -13.62745 -13.14703 -12.59144 -12.15721 -11.95599 -11.89355 -11.84511 -11.65875 -11.27274 -11.11589 -10.93523 -10.80460 -10.69723 -10.09938 -9.79878 -9.77477 -9.23206 -9.01007 -8.59369 -8.11430 -7.89520 -6.01286 -4.20348 -0.17786 0.74601 1.34252 1.98265 2.72478 2.81305 3.26871 3.34091 3.35989 3.81312 4.32083 4.50361 4.68803 4.71170 5.05710 5.16645 5.26163 5.27865 5.68487 5.80752 5.92458 6.03409 6.07656 6.14039 6.32311 6.48953 6.78587 7.31706 7.44979 7.52360 7.64011 7.79727 7.84840 8.17707 8.83407 9.45904 9.62093 11.02763 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.033935 B = 0.003102 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.915699 B = 9022.834455 C = 9126.651613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.154 3.846 3 H 0.061 0.939 4 N -0.656 5.656 5 C 0.031 3.969 6 C 0.236 3.764 7 H 0.051 0.949 8 O -0.553 6.553 9 C -0.575 4.575 10 H 0.055 0.945 11 C 0.080 3.920 12 N -0.857 5.857 13 Si 0.890 3.110 14 H -0.279 1.279 15 H -0.286 1.286 16 H -0.274 1.274 17 C 0.069 3.931 18 N -0.457 5.457 19 C 0.139 3.861 20 C -0.320 4.320 21 C 0.571 3.429 22 O -0.516 6.516 23 O -0.505 6.505 24 S 0.230 5.770 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.343 0.657 29 H 0.066 0.934 30 H 0.024 0.976 31 H 0.344 0.656 32 H 0.261 0.739 33 H 0.192 0.808 34 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.657 0.570 -20.223 20.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.041 3.959 3 H 0.079 0.921 4 N -0.289 5.289 5 C -0.098 4.098 6 C 0.178 3.822 7 H 0.069 0.931 8 O -0.354 6.354 9 C -0.613 4.613 10 H 0.073 0.927 11 C -0.127 4.127 12 N -0.493 5.493 13 Si 0.717 3.283 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.199 1.199 17 C -0.205 4.205 18 N -0.170 5.170 19 C -0.023 4.023 20 C -0.442 4.442 21 C 0.414 3.586 22 O -0.406 6.406 23 O -0.317 6.317 24 S 0.490 5.510 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.161 0.839 29 H 0.084 0.916 30 H 0.043 0.957 31 H 0.187 0.813 32 H 0.070 0.930 33 H 0.208 0.792 34 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -2.722 0.926 -19.653 19.862 hybrid contribution 0.772 0.503 -0.150 0.933 sum -1.950 1.429 -19.802 19.949 Atomic orbital electron populations 1.21793 0.92134 1.03624 1.01627 1.20373 0.97160 0.93904 0.84478 0.92110 1.60631 1.34167 1.32493 1.01645 1.23082 1.00553 0.94032 0.92086 1.19280 0.89842 0.85131 0.87935 0.93090 1.86573 1.21440 1.35502 1.91927 1.21617 1.47664 0.96630 0.95431 0.92668 1.25030 0.94022 0.94817 0.98802 1.70083 1.41073 1.13934 1.24169 0.86669 0.77825 0.81212 0.82617 1.20492 1.21142 1.19896 1.28103 0.98610 0.92966 1.00855 1.66162 1.18082 1.11875 1.20842 1.22864 0.91721 1.01356 0.86354 1.24887 1.20105 0.98523 1.00712 1.19008 0.74624 0.80648 0.84363 1.90968 1.47437 1.43002 1.59186 1.84566 1.77246 1.30080 1.39818 1.84118 1.52484 1.05848 1.08596 0.90817 0.90982 0.92947 0.83851 0.91572 0.95740 0.81322 0.92957 0.79157 0.72244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 9.40 37.16 0.35 -1.28 16 2 C 0.15 2.09 3.11 -68.86 -0.21 1.87 16 3 H 0.06 0.75 7.80 -51.93 -0.40 0.35 16 4 N -0.66 -11.24 6.13 -107.95 -0.66 -11.90 16 5 C 0.03 0.60 5.09 -3.82 -0.02 0.58 16 6 C 0.24 5.83 3.03 -27.88 -0.08 5.74 16 7 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 8 O -0.55 -14.22 12.60 -35.23 -0.44 -14.66 16 9 C -0.57 -15.41 8.76 -34.44 -0.30 -15.71 16 10 H 0.06 1.43 7.74 -52.49 -0.41 1.03 16 11 C 0.08 2.20 5.40 -17.82 -0.10 2.11 16 12 N -0.86 -25.20 12.84 55.43 0.71 -24.49 16 13 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 16 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 17 C 0.07 0.88 5.89 -13.30 -0.08 0.80 16 18 N -0.46 -6.27 10.45 -11.26 -0.12 -6.39 16 19 C 0.14 1.58 11.20 -18.48 -0.21 1.37 16 20 C -0.32 -3.63 6.51 -36.79 -0.24 -3.87 16 21 C 0.57 6.15 8.30 34.06 0.28 6.43 16 22 O -0.52 -6.87 17.75 -19.36 -0.34 -7.21 16 23 O -0.50 -3.70 13.23 -40.95 -0.54 -4.24 16 24 S 0.23 2.55 23.00 -107.50 -2.47 0.08 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.07 0.89 7.45 -51.93 -0.39 0.51 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.34 6.12 8.35 -39.29 -0.33 5.79 16 29 H 0.07 1.23 7.43 -51.93 -0.39 0.85 16 30 H 0.02 0.46 8.06 -51.93 -0.42 0.04 16 31 H 0.34 7.94 9.04 45.56 0.41 8.35 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.19 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.42 1.07 9.11 45.56 0.42 1.49 16 LS Contribution 319.32 15.07 4.81 4.81 Total: -1.00 -33.10 319.32 -7.02 -40.12 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -2.33 Total: 9.98 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -0.61 Total: -1.95 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: -0.07 Total: -42.78 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -1.33 Total: -26.12 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -2.47 Total: 0.08 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.10 -7.02 -40.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604342417.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.351 kcal (2) G-P(sol) polarization free energy of solvation -33.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds