Wall clock time and date at job start Tue Mar 31 2020 05:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47588 * 2 1 4 4 N 1.46902 * 109.46987 * 120.00225 * 2 1 3 5 5 C 1.46905 * 110.99871 * 274.99776 * 4 2 1 6 6 C 1.53000 * 109.47123 * 180.02562 * 5 4 2 7 7 H 1.09002 * 109.47398 * 59.99875 * 6 5 4 8 8 O 1.42903 * 109.46726 * 299.99631 * 6 5 4 9 9 C 1.50699 * 109.47083 * 179.97438 * 6 5 4 10 10 H 1.08000 * 119.99792 * 359.97438 * 9 6 5 11 11 C 1.37878 * 119.99902 * 179.97438 * 9 6 5 12 12 N 1.31515 * 120.00126 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 119.99745 * 180.02562 * 11 9 6 14 14 H 1.48500 * 109.47256 * 90.00491 * 13 11 9 15 15 H 1.48506 * 109.46930 * 210.00332 * 13 11 9 16 16 H 1.48499 * 109.47104 * 330.00193 * 13 11 9 17 17 C 1.50707 * 109.47139 * 239.99758 * 2 1 3 18 18 N 1.29389 * 124.70491 * 284.70007 * 17 2 1 19 19 C 1.30910 * 117.46801 * 179.83030 * 18 17 2 20 20 C 1.36756 * 113.93047 * 0.44902 * 19 18 17 21 21 C 1.46500 * 126.18023 * 179.76680 * 20 19 18 22 22 O 1.21618 * 119.99813 * 180.02562 * 21 20 19 23 23 O 1.34868 * 120.00097 * 359.97438 * 21 20 19 24 24 S 1.70915 * 124.70673 * 105.00224 * 17 2 1 25 25 H 1.08998 * 109.47588 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47094 * 299.99962 * 1 2 3 27 27 H 1.08998 * 109.47074 * 59.99626 * 1 2 3 28 28 H 1.00906 * 111.00466 * 151.04766 * 4 2 1 29 29 H 1.08992 * 109.47078 * 59.99994 * 5 4 2 30 30 H 1.09004 * 109.46829 * 299.99640 * 5 4 2 31 31 H 0.96700 * 114.00234 * 300.00043 * 8 6 5 32 32 H 0.96999 * 120.00073 * 179.97438 * 12 11 9 33 33 H 1.08001 * 123.04088 * 180.21499 * 19 18 17 34 34 H 0.96711 * 117.00393 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0824 0.2226 2.3469 6 6 2.5962 -0.5329 3.5742 7 1 3.5916 -0.9264 3.3683 8 8 1.7097 -1.6129 3.8742 9 6 2.6612 0.4060 4.7512 10 1 2.3661 1.4384 4.6353 11 6 3.0975 -0.0531 5.9759 12 7 3.4574 -1.3101 6.1169 13 14 3.1774 1.1107 7.4350 14 1 1.8837 1.0808 8.1634 15 1 4.2692 0.6859 8.3476 16 1 3.4429 2.4902 6.9539 17 6 2.0323 -0.7105 -1.2305 18 7 2.0234 -1.9938 -1.3954 19 6 2.4926 -2.4607 -2.5248 20 6 2.9430 -1.4937 -3.3805 21 6 3.5231 -1.7149 -4.7074 22 8 3.8890 -0.7677 -5.3767 23 8 3.6522 -2.9691 -5.1864 24 16 2.6996 0.0667 -2.5987 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 2.9173 -1.1206 1.0288 29 1 1.0871 0.6163 2.5525 30 1 2.7589 1.0461 2.1182 31 1 0.8038 -1.3359 4.0682 32 1 3.7647 -1.6330 6.9784 33 1 2.5248 -3.5147 -2.7582 34 1 4.0410 -3.0651 -6.0667 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604342417.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:03 Heat of formation + Delta-G solvation = -121.504943 kcal Electronic energy + Delta-G solvation = -19628.163239 eV Core-core repulsion = 16265.857810 eV Total energy + Delta-G solvation = -3362.305429 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.43117 -40.65548 -38.52905 -37.15807 -36.69254 -34.19248 -32.71128 -31.07257 -29.25635 -27.46613 -25.98138 -24.28152 -23.18392 -22.38886 -20.81891 -19.45880 -18.94722 -18.71412 -17.88114 -16.93353 -16.83237 -16.63622 -16.34747 -15.82871 -15.70808 -15.38984 -15.01709 -14.69883 -14.51534 -14.15520 -13.46817 -13.15251 -12.93441 -12.92145 -12.75205 -12.71271 -12.70396 -12.62383 -12.17329 -12.11592 -11.98649 -10.99316 -10.75211 -10.70751 -10.68842 -10.16009 -9.99258 -9.27908 -8.10629 -6.36655 -1.07857 -0.12707 0.43818 1.10714 1.43217 1.43395 1.54077 1.84671 2.09031 2.40728 2.88357 3.15397 3.24199 3.69285 3.85926 4.15449 4.22092 4.31996 4.39270 4.48594 4.64350 4.79779 4.89933 4.95331 5.11025 5.36014 5.40758 5.63670 5.77948 5.99285 6.15835 6.35904 6.53659 6.77362 6.83580 7.38145 7.67042 8.93834 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.033935 B = 0.003102 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.915699 B = 9022.834455 C = 9126.651613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.078 0.922 4 N -0.666 5.666 5 C 0.052 3.948 6 C 0.234 3.766 7 H 0.014 0.986 8 O -0.571 6.571 9 C -0.585 4.585 10 H 0.063 0.937 11 C 0.024 3.976 12 N -0.901 5.901 13 Si 0.960 3.040 14 H -0.273 1.273 15 H -0.287 1.287 16 H -0.263 1.263 17 C 0.054 3.946 18 N -0.485 5.485 19 C 0.138 3.862 20 C -0.328 4.328 21 C 0.578 3.422 22 O -0.545 6.545 23 O -0.493 6.493 24 S 0.264 5.736 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.335 0.665 29 H 0.076 0.924 30 H 0.031 0.969 31 H 0.353 0.647 32 H 0.260 0.740 33 H 0.212 0.788 34 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.114 1.688 -21.249 21.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.040 3.960 3 H 0.096 0.904 4 N -0.298 5.298 5 C -0.077 4.077 6 C 0.176 3.824 7 H 0.032 0.968 8 O -0.374 6.374 9 C -0.623 4.623 10 H 0.082 0.918 11 C -0.178 4.178 12 N -0.538 5.538 13 Si 0.785 3.215 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.187 1.187 17 C -0.220 4.220 18 N -0.199 5.199 19 C -0.023 4.023 20 C -0.451 4.451 21 C 0.422 3.578 22 O -0.438 6.438 23 O -0.308 6.308 24 S 0.524 5.476 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.096 0.904 28 H 0.153 0.847 29 H 0.094 0.906 30 H 0.049 0.951 31 H 0.198 0.802 32 H 0.069 0.931 33 H 0.229 0.771 34 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges -3.193 2.045 -20.710 21.054 hybrid contribution 0.930 0.082 0.041 0.935 sum -2.263 2.126 -20.668 20.900 Atomic orbital electron populations 1.21764 0.91185 1.02915 1.02851 1.20435 0.97837 0.94384 0.83328 0.90425 1.60524 1.33790 1.32717 1.02805 1.22635 1.00732 0.93465 0.90847 1.19170 0.88510 0.84784 0.89971 0.96794 1.86516 1.22217 1.36362 1.92290 1.22049 1.46766 0.97276 0.96255 0.91844 1.25918 0.93674 0.96297 1.01960 1.70233 1.42641 1.16077 1.24836 0.85552 0.77806 0.79306 0.78840 1.19840 1.21234 1.18724 1.27921 0.99465 0.93132 1.01434 1.66168 1.18987 1.12615 1.22104 1.23128 0.91229 1.02332 0.85629 1.25111 1.19989 0.98759 1.01207 1.18891 0.73907 0.81134 0.83882 1.90962 1.48870 1.44091 1.59890 1.84526 1.76830 1.27996 1.41426 1.83960 1.51231 1.05243 1.07128 0.92460 0.91097 0.90361 0.84665 0.90583 0.95110 0.80226 0.93100 0.77144 0.69695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 9.40 71.98 0.68 -2.27 16 2 C 0.15 3.94 3.11 44.17 0.14 4.08 16 3 H 0.08 1.76 7.80 -2.39 -0.02 1.74 16 4 N -0.67 -22.61 6.13 -495.43 -3.04 -25.65 16 5 C 0.05 1.99 5.09 86.30 0.44 2.43 16 6 C 0.23 11.71 3.03 29.85 0.09 11.80 16 7 H 0.01 0.80 8.14 -2.39 -0.02 0.78 16 8 O -0.57 -29.90 12.60 -148.98 -1.88 -31.77 16 9 C -0.59 -31.33 8.76 25.60 0.22 -31.11 16 10 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 11 C 0.02 1.32 5.40 84.65 0.46 1.77 16 12 N -0.90 -53.93 12.84 21.45 0.28 -53.66 16 13 Si 0.96 42.74 29.54 68.60 2.03 44.77 16 14 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 15 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 16 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 17 C 0.05 1.32 5.89 88.47 0.52 1.84 16 18 N -0.48 -12.92 10.45 -189.54 -1.98 -14.90 16 19 C 0.14 2.96 11.20 84.48 0.95 3.90 16 20 C -0.33 -6.93 6.51 24.08 0.16 -6.77 16 21 C 0.58 11.42 8.30 69.98 0.58 12.00 16 22 O -0.55 -13.74 17.75 19.45 0.35 -13.39 16 23 O -0.49 -6.05 13.23 -57.81 -0.77 -6.82 16 24 S 0.26 5.45 23.00 -56.49 -1.30 4.15 16 25 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.07 1.64 7.45 -2.39 -0.02 1.62 16 27 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.34 12.13 8.35 -89.69 -0.75 11.38 16 29 H 0.08 2.74 7.43 -2.39 -0.02 2.72 16 30 H 0.03 1.12 8.06 -2.39 -0.02 1.10 16 31 H 0.35 16.50 9.04 -74.06 -0.67 15.83 16 32 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 33 H 0.21 3.38 8.06 -2.91 -0.02 3.35 16 34 H 0.44 1.12 9.11 -74.05 -0.67 0.44 16 Total: -1.00 -71.07 319.32 -3.01 -74.08 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: -0.92 Total: 25.52 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 4.23 Total: -2.33 kcal Atomic # 7 Polarization: -89.46 SS G_CDS: -4.74 Total: -94.21 kcal Atomic # 8 Polarization: -49.69 SS G_CDS: -2.30 Total: -51.98 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: 5.45 SS G_CDS: -1.30 Total: 4.15 kcal Total: -71.07 -3.01 -74.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604342417.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.427 kcal (2) G-P(sol) polarization free energy of solvation -71.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds