Wall clock time and date at job start Tue Mar 31 2020 06:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48495 * 109.46979 * 60.00269 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21279 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 S 1.81398 * 109.47297 * 180.02562 * 16 14 13 18 18 C 1.76202 * 103.00074 * 180.02562 * 17 16 14 19 19 N 1.31163 * 125.55802 * 359.69220 * 18 17 16 20 20 N 1.40411 * 106.90367 * 179.89420 * 19 18 17 21 21 H 0.96998 * 126.76177 * 180.14218 * 20 19 18 22 22 C 1.34764 * 106.48034 * 0.36512 * 20 19 18 23 23 O 1.35428 * 125.96853 * 179.75240 * 22 20 19 24 24 N 1.31408 * 108.06169 * 359.77977 * 22 20 19 25 25 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 26 26 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 28 28 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 29 29 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 30 30 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 31 31 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 32 32 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 33 33 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 34 34 H 0.96696 * 114.00394 * 269.99704 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5326 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6305 0.4601 16 6 0.0606 3.3290 2.6792 17 16 -1.6234 3.9885 2.5386 18 6 -1.8954 4.7210 4.1179 19 7 -1.0366 4.7375 5.1091 20 7 -1.6520 5.4193 6.1712 21 1 -1.2704 5.5984 7.0448 22 6 -2.8790 5.7716 5.7395 23 8 -3.8107 6.4456 6.4547 24 7 -3.0137 5.3462 4.5035 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 5.9548 0.8552 -0.5318 31 1 2.2902 2.1166 1.9978 32 1 0.0991 2.6017 3.4901 33 1 0.7539 4.1436 2.8885 34 1 -4.4061 5.8760 6.9608 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001611077901.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:48 Heat of formation + Delta-G solvation = 13.745323 kcal Electronic energy + Delta-G solvation = -19726.100105 eV Core-core repulsion = 16401.952319 eV Total energy + Delta-G solvation = -3324.147786 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.089 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.42519 -39.28505 -38.14421 -35.36586 -32.98704 -32.56940 -31.77968 -30.98986 -29.45658 -26.97157 -23.69673 -22.75611 -22.35827 -20.86402 -19.86612 -19.63215 -18.22362 -17.73978 -16.79735 -16.53848 -16.37795 -15.63109 -15.18321 -14.82503 -14.05104 -13.87605 -13.69324 -13.28364 -13.20879 -12.56851 -12.41722 -12.13779 -11.89610 -11.65963 -11.05714 -10.92220 -10.87461 -10.72066 -10.45673 -10.32107 -10.18027 -9.91838 -9.65629 -9.38771 -9.07955 -8.37308 -8.21079 -7.78820 -6.61092 -4.25643 0.88890 0.95396 1.65889 2.14760 2.30884 3.03010 3.37823 3.44495 3.50775 3.58340 3.82692 4.39916 4.41476 5.02652 5.10808 5.14364 5.23461 5.34070 5.64363 6.05681 6.06949 6.08524 6.25234 6.65448 6.77865 6.90435 6.91949 7.01135 7.28059 7.34080 7.42043 7.58127 8.19196 8.33011 8.62109 8.83968 9.43718 10.79817 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.040488 B = 0.003279 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.395457 B = 8537.265288 C = 8844.837219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.248 3.752 4 H 0.044 0.956 5 C -0.618 4.618 6 H 0.062 0.938 7 C 0.040 3.960 8 N -0.897 5.897 9 Si 1.040 2.960 10 H -0.284 1.284 11 H -0.268 1.268 12 H -0.279 1.279 13 N -0.692 5.692 14 C 0.522 3.478 15 O -0.534 6.534 16 C -0.160 4.160 17 S 0.116 5.884 18 C 0.208 3.792 19 N -0.303 5.303 20 N -0.481 5.481 21 H 0.441 0.559 22 C 0.462 3.538 23 O -0.441 6.441 24 N -0.509 5.509 25 H 0.052 0.948 26 H 0.031 0.969 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.269 0.731 31 H 0.395 0.605 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.508 6.740 16.367 22.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C 0.145 3.855 4 H 0.062 0.938 5 C -0.656 4.656 6 H 0.080 0.920 7 C -0.167 4.167 8 N -0.530 5.530 9 Si 0.867 3.133 10 H -0.209 1.209 11 H -0.194 1.194 12 H -0.205 1.205 13 N -0.340 5.340 14 C 0.304 3.696 15 O -0.412 6.412 16 C -0.312 4.312 17 S 0.342 5.658 18 C -0.181 4.181 19 N -0.141 5.141 20 N -0.212 5.212 21 H 0.288 0.712 22 C 0.145 3.855 23 O -0.242 6.242 24 N -0.249 5.249 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.229 0.771 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -15.159 6.431 12.784 20.847 hybrid contribution 1.049 0.651 4.445 4.613 sum -14.111 7.082 17.230 23.370 Atomic orbital electron populations 1.21895 0.97237 0.99051 1.02025 1.22375 0.93905 0.99625 1.01984 1.19126 0.95919 0.88628 0.81860 0.93786 1.22082 0.89582 1.49725 1.04221 0.92016 1.25690 0.97526 0.92288 1.01205 1.70877 1.07075 1.40776 1.34306 0.84121 0.75506 0.77824 0.75831 1.20927 1.19409 1.20491 1.46169 1.13912 1.55457 1.18438 1.19350 0.83411 0.79538 0.87295 1.90724 1.50475 1.59621 1.40423 1.23914 0.99278 1.05374 1.02633 1.86605 1.14755 1.64967 0.99519 1.26559 0.90317 0.99867 1.01401 1.78548 1.20038 1.19733 0.95782 1.48260 1.13022 1.44174 1.15752 0.71240 1.21284 0.83779 0.91997 0.88479 1.84866 1.43897 1.32606 1.62786 1.70847 1.24884 1.19398 1.09794 0.92867 0.94960 0.93303 0.91150 0.93025 0.92094 0.77147 0.86503 0.86397 0.72492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.53 37.15 0.32 -2.52 16 2 C -0.14 -3.03 5.28 -26.73 -0.14 -3.17 16 3 C 0.25 5.70 1.82 -69.08 -0.13 5.57 16 4 H 0.04 1.10 6.26 -51.93 -0.32 0.78 16 5 C -0.62 -16.25 9.01 -34.44 -0.31 -16.56 16 6 H 0.06 1.69 7.96 -52.48 -0.42 1.28 16 7 C 0.04 1.09 5.32 -17.82 -0.09 1.00 16 8 N -0.90 -26.35 13.69 55.43 0.76 -25.59 16 9 Si 1.04 24.65 26.27 -169.99 -4.47 20.18 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -5.91 5.67 56.52 0.32 -5.59 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 13 N -0.69 -13.15 5.03 -54.94 -0.28 -13.42 16 14 C 0.52 9.28 6.44 -10.99 -0.07 9.21 16 15 O -0.53 -11.09 13.00 5.56 0.07 -11.02 16 16 C -0.16 -2.17 6.04 36.01 0.22 -1.96 16 17 S 0.12 1.67 21.30 -107.50 -2.29 -0.62 16 18 C 0.21 2.86 8.28 -90.94 -0.75 2.10 16 19 N -0.30 -3.74 12.34 30.14 0.37 -3.37 16 20 N -0.48 -4.25 7.45 29.39 0.22 -4.04 16 21 H 0.44 2.17 8.96 -182.36 -1.63 0.54 16 22 C 0.46 4.50 9.54 -89.87 -0.86 3.65 16 23 O -0.44 -2.69 13.63 -17.98 -0.25 -2.94 16 24 N -0.51 -6.81 11.25 -14.97 -0.17 -6.97 16 25 H 0.05 1.09 7.88 -51.93 -0.41 0.68 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.94 5.63 -51.92 -0.29 0.64 16 28 H 0.07 1.60 4.74 -51.92 -0.25 1.35 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.27 7.81 8.73 -40.82 -0.36 7.45 16 31 H 0.40 6.63 8.53 -40.82 -0.35 6.28 16 32 H 0.12 1.37 8.14 -51.92 -0.42 0.95 16 33 H 0.12 1.45 8.14 -51.92 -0.42 1.02 16 34 H 0.42 0.14 9.06 45.56 0.41 0.55 16 LS Contribution 304.40 15.07 4.59 4.59 Total: -1.00 -34.13 304.40 -7.44 -41.57 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -4.18 Total: 4.30 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -1.82 Total: -2.68 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 0.91 Total: -53.39 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.17 Total: -13.95 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -4.47 Total: 20.18 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.29 Total: -0.62 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -34.13 -7.44 -41.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611077901.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.313 kcal (2) G-P(sol) polarization free energy of solvation -34.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds