Wall clock time and date at job start Tue Mar 31 2020 06:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48495 * 109.46979 * 60.00269 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21279 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 S 1.81398 * 109.47297 * 180.02562 * 16 14 13 18 18 C 1.76202 * 103.00074 * 180.02562 * 17 16 14 19 19 N 1.31163 * 125.55802 * 359.69220 * 18 17 16 20 20 N 1.40411 * 106.90367 * 179.89420 * 19 18 17 21 21 H 0.96998 * 126.76177 * 180.14218 * 20 19 18 22 22 C 1.34764 * 106.48034 * 0.36512 * 20 19 18 23 23 O 1.35428 * 125.96853 * 179.75240 * 22 20 19 24 24 N 1.31408 * 108.06169 * 359.77977 * 22 20 19 25 25 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 26 26 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 28 28 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 29 29 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 30 30 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 31 31 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 32 32 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 33 33 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 34 34 H 0.96696 * 114.00394 * 269.99704 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5326 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6305 0.4601 16 6 0.0606 3.3290 2.6792 17 16 -1.6234 3.9885 2.5386 18 6 -1.8954 4.7210 4.1179 19 7 -1.0366 4.7375 5.1091 20 7 -1.6520 5.4193 6.1712 21 1 -1.2704 5.5984 7.0448 22 6 -2.8790 5.7716 5.7395 23 8 -3.8107 6.4456 6.4547 24 7 -3.0137 5.3462 4.5035 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 5.9548 0.8552 -0.5318 31 1 2.2902 2.1166 1.9978 32 1 0.0991 2.6017 3.4901 33 1 0.7539 4.1436 2.8885 34 1 -4.4061 5.8760 6.9608 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611077901.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:47 Heat of formation + Delta-G solvation = -16.754201 kcal Electronic energy + Delta-G solvation = -19727.422664 eV Core-core repulsion = 16401.952319 eV Total energy + Delta-G solvation = -3325.470345 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.25275 -40.81003 -38.70462 -37.10209 -34.48525 -33.81682 -33.42574 -31.90649 -30.74363 -28.77638 -24.56107 -24.28113 -23.53271 -22.42939 -21.27117 -20.56217 -19.86003 -18.82704 -17.95245 -17.76856 -17.32369 -17.12502 -16.61312 -15.72537 -15.49046 -15.13819 -14.89511 -14.70162 -14.44961 -14.40313 -14.16263 -13.74219 -13.31602 -12.65481 -12.59316 -12.45127 -12.25976 -11.88987 -11.85605 -11.76520 -11.37654 -11.27564 -11.11389 -11.03494 -10.88586 -10.46259 -9.85182 -8.84628 -8.77683 -6.42843 -0.14328 0.16986 0.81705 1.25567 1.44172 1.48312 1.53440 1.62715 1.71783 2.39615 2.44337 2.92012 3.03373 3.56132 3.77475 3.98742 4.26339 4.36547 4.44823 4.48988 4.58789 4.78346 4.88938 5.15584 5.24427 5.33290 5.58044 5.62325 5.67309 5.69998 6.02604 6.43335 6.54014 6.61811 6.74726 7.26877 7.37072 8.62045 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.040488 B = 0.003279 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.395457 B = 8537.265288 C = 8844.837219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.137 4.137 3 C 0.252 3.748 4 H 0.026 0.974 5 C -0.612 4.612 6 H 0.041 0.959 7 C -0.005 4.005 8 N -0.930 5.930 9 Si 1.069 2.931 10 H -0.286 1.286 11 H -0.242 1.242 12 H -0.273 1.273 13 N -0.694 5.694 14 C 0.523 3.477 15 O -0.562 6.562 16 C -0.142 4.142 17 S 0.086 5.914 18 C 0.200 3.800 19 N -0.313 5.313 20 N -0.464 5.464 21 H 0.459 0.541 22 C 0.477 3.523 23 O -0.436 6.436 24 N -0.547 5.547 25 H 0.041 0.959 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.258 0.742 31 H 0.406 0.594 32 H 0.141 0.859 33 H 0.134 0.866 34 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.257 7.061 18.092 25.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.176 4.176 3 C 0.148 3.852 4 H 0.044 0.956 5 C -0.650 4.650 6 H 0.059 0.941 7 C -0.206 4.206 8 N -0.565 5.565 9 Si 0.892 3.108 10 H -0.211 1.211 11 H -0.166 1.166 12 H -0.199 1.199 13 N -0.343 5.343 14 C 0.308 3.692 15 O -0.443 6.443 16 C -0.294 4.294 17 S 0.311 5.689 18 C -0.190 4.190 19 N -0.152 5.152 20 N -0.198 5.198 21 H 0.309 0.691 22 C 0.160 3.840 23 O -0.240 6.240 24 N -0.289 5.289 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.241 0.759 32 H 0.159 0.841 33 H 0.152 0.848 34 H 0.306 0.694 Dipole moment (debyes) X Y Z Total from point charges -16.933 6.762 14.603 23.360 hybrid contribution 1.531 0.678 4.107 4.435 sum -15.402 7.440 18.710 25.350 Atomic orbital electron populations 1.21784 0.95387 1.00479 1.01601 1.22263 0.95451 0.98193 1.01663 1.18805 0.93447 0.89807 0.83185 0.95589 1.22287 0.91511 1.48013 1.03194 0.94057 1.26789 0.97670 0.92131 1.03982 1.70979 1.08115 1.43393 1.34040 0.83747 0.75218 0.78745 0.73097 1.21138 1.16617 1.19893 1.45961 1.14965 1.55804 1.17546 1.19850 0.82322 0.78668 0.88356 1.90714 1.51169 1.60443 1.41928 1.23704 0.99135 1.06047 1.00487 1.86664 1.15288 1.65801 1.01120 1.26241 0.90918 1.00664 1.01143 1.78442 1.20333 1.20220 0.96200 1.48127 1.12697 1.43114 1.15817 0.69065 1.21195 0.84367 0.90561 0.87882 1.84862 1.43698 1.32890 1.62590 1.70758 1.25494 1.20862 1.11763 0.93985 0.92562 0.93053 0.92298 0.92541 0.93279 0.75862 0.84138 0.84764 0.69374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.02 8.53 71.98 0.61 -4.41 16 2 C -0.14 -5.72 5.28 30.59 0.16 -5.56 16 3 C 0.25 11.43 1.82 44.24 0.08 11.51 16 4 H 0.03 1.30 6.26 -2.39 -0.01 1.28 16 5 C -0.61 -32.37 9.01 25.60 0.23 -32.14 16 6 H 0.04 2.31 7.96 -2.91 -0.02 2.28 16 7 C -0.01 -0.28 5.32 84.66 0.45 0.17 16 8 N -0.93 -55.65 13.69 21.45 0.29 -55.35 16 9 Si 1.07 49.50 26.27 68.60 1.80 51.31 16 10 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 11 H -0.24 -10.11 5.67 99.48 0.56 -9.54 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 N -0.69 -25.59 5.03 -446.11 -2.24 -27.84 16 14 C 0.52 17.92 6.44 87.66 0.56 18.48 16 15 O -0.56 -22.85 13.00 -3.03 -0.04 -22.89 16 16 C -0.14 -3.60 6.04 71.24 0.43 -3.17 16 17 S 0.09 2.39 21.30 -56.49 -1.20 1.18 16 18 C 0.20 5.20 8.28 180.46 1.49 6.70 16 19 N -0.31 -7.04 12.34 -58.56 -0.72 -7.77 16 20 N -0.46 -6.95 7.45 -172.64 -1.29 -8.24 16 21 H 0.46 3.10 8.96 -213.12 -1.91 1.19 16 22 C 0.48 8.11 9.54 180.08 1.72 9.82 16 23 O -0.44 -3.98 13.63 -87.24 -1.19 -5.17 16 24 N -0.55 -13.76 11.25 -314.71 -3.54 -17.30 16 25 H 0.04 1.64 7.88 -2.39 -0.02 1.62 16 26 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.05 1.87 5.63 -2.38 -0.01 1.85 16 28 H 0.06 2.58 4.74 -2.38 -0.01 2.57 16 29 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.26 15.44 8.73 -92.71 -0.81 14.63 16 31 H 0.41 13.13 8.53 -92.71 -0.79 12.34 16 32 H 0.14 2.92 8.14 -2.39 -0.02 2.90 16 33 H 0.13 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.44 -1.23 9.06 -74.06 -0.67 -1.90 16 Total: -1.00 -73.81 304.40 -4.75 -78.56 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -2.36 Total: 12.11 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 5.74 Total: 1.40 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -7.50 Total: -116.50 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -1.23 Total: -28.06 kcal Atomic # 14 Polarization: 49.50 SS G_CDS: 1.80 Total: 51.31 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -1.20 Total: 1.18 kcal Total: -73.81 -4.75 -78.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611077901.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.803 kcal (2) G-P(sol) polarization free energy of solvation -73.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds