Wall clock time and date at job start Tue Mar 31 2020 06:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46507 * 109.47143 * 2 1 4 4 C 1.46500 * 119.99746 * 263.23357 * 3 2 1 5 5 C 1.53000 * 109.46635 * 269.99484 * 4 3 2 6 6 N 1.46502 * 109.47010 * 179.97438 * 5 4 3 7 7 C 1.36936 * 119.99999 * 179.97438 * 6 5 4 8 8 H 1.08003 * 120.00268 * 0.02562 * 7 6 5 9 9 C 1.38818 * 120.00223 * 179.97438 * 7 6 5 10 10 N 1.31619 * 120.00138 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 119.99563 * 0.02562 * 9 7 6 12 12 H 1.48507 * 109.47398 * 89.99481 * 11 9 7 13 13 H 1.48505 * 109.47304 * 209.99421 * 11 9 7 14 14 H 1.48499 * 109.47342 * 329.99364 * 11 9 7 15 15 C 1.34769 * 119.99862 * 83.22685 * 3 2 1 16 16 O 1.21721 * 120.00031 * 183.93144 * 15 3 2 17 17 C 1.46496 * 120.00388 * 3.93149 * 15 3 2 18 18 O 1.34988 * 126.00366 * 353.48782 * 17 15 3 19 19 C 1.33944 * 109.40021 * 179.73010 * 18 17 15 20 20 C 1.35073 * 108.82184 * 0.02562 * 19 18 17 21 21 C 1.36706 * 126.00639 * 173.17182 * 17 15 3 22 22 Cl 1.73594 * 126.67214 * 0.26936 * 21 17 15 23 23 H 1.09002 * 109.47020 * 59.99877 * 1 2 3 24 24 H 1.08999 * 109.47345 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47015 * 300.00477 * 1 2 3 26 26 H 1.08997 * 109.46837 * 240.00118 * 2 1 3 27 27 H 1.08998 * 109.47276 * 119.99694 * 2 1 3 28 28 H 1.09002 * 109.47464 * 29.99621 * 4 3 2 29 29 H 1.09001 * 109.46996 * 149.99967 * 4 3 2 30 30 H 1.08994 * 109.47461 * 299.99989 * 5 4 3 31 31 H 1.09001 * 109.47034 * 60.00507 * 5 4 3 32 32 H 0.97000 * 120.00179 * 0.02562 * 6 5 4 33 33 H 0.96998 * 119.99992 * 180.02562 * 10 9 7 34 34 H 1.07995 * 125.58745 * 179.97438 * 19 18 17 35 35 H 1.08005 * 126.43692 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.4035 2.0220 -1.2599 5 6 3.8881 1.7676 -1.5284 6 7 4.2731 2.4078 -2.7886 7 6 5.5635 2.3151 -3.2374 8 1 6.2974 1.7697 -2.6625 9 6 5.9283 2.9212 -4.4318 10 7 7.1685 2.8317 -4.8634 11 14 4.6590 3.8639 -5.4264 12 1 4.6486 5.2852 -4.9959 13 1 5.0031 3.7863 -6.8690 14 1 3.3160 3.2699 -5.2053 15 6 2.1132 2.0624 1.1590 16 8 2.4504 3.2320 1.1517 17 6 1.8105 1.3954 2.4277 18 8 1.3102 0.1496 2.5696 19 6 1.1683 -0.1271 3.8724 20 6 1.5762 0.9410 4.5917 21 6 1.9905 1.9228 3.6760 22 17 2.6100 3.4993 4.0559 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8105 1.6068 -2.0749 29 1 2.2254 3.0952 -1.1911 30 1 4.4811 2.1828 -0.7136 31 1 4.0662 0.6944 -1.5973 32 1 3.6142 2.8980 -3.3048 33 1 7.4234 3.2555 -5.6978 34 1 0.7891 -1.0521 4.2807 35 1 1.5836 1.0242 5.6685 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754065450.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:29 Heat of formation + Delta-G solvation = 2.649556 kcal Electronic energy + Delta-G solvation = -20427.495145 eV Core-core repulsion = 17068.529752 eV Total energy + Delta-G solvation = -3358.965392 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.12683 -39.71902 -36.90770 -36.32929 -34.80621 -33.17203 -31.91818 -30.57850 -30.39047 -27.92718 -24.43849 -23.70542 -22.47479 -22.12832 -21.31491 -20.01005 -17.95794 -17.54774 -16.99717 -16.70084 -16.14479 -15.14655 -14.51699 -14.37071 -14.31957 -13.90478 -13.73223 -13.67300 -13.56897 -13.15768 -12.85592 -12.60143 -12.45660 -12.13136 -11.58775 -11.28374 -11.15533 -11.14012 -11.00799 -10.73466 -10.16480 -10.09028 -9.96452 -9.58380 -9.04655 -8.88276 -8.63452 -7.23458 -5.74709 -3.11153 0.68086 1.78112 1.87276 2.44975 2.90745 3.03292 3.39280 3.43282 3.47688 4.15769 4.38650 4.61370 4.78736 4.82149 5.05558 5.09599 5.23314 5.29716 5.40405 5.49021 5.58254 5.63695 5.64953 5.73397 5.74550 5.93164 6.05126 6.30157 6.44457 6.62333 6.78025 7.27008 7.97304 8.02291 8.43420 9.21835 9.93885 10.12983 11.43617 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.022892 B = 0.004066 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.846768 B = 6884.999739 C = 7536.895456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.098 3.902 3 N -0.596 5.596 4 C 0.105 3.895 5 C 0.146 3.854 6 N -0.753 5.753 7 C -0.244 4.244 8 H 0.090 0.910 9 C 0.005 3.995 10 N -0.934 5.934 11 Si 0.886 3.114 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.277 1.277 15 C 0.592 3.408 16 O -0.496 6.496 17 C -0.051 4.051 18 O -0.143 6.143 19 C -0.005 4.005 20 C -0.213 4.213 21 C -0.055 4.055 22 Cl -0.004 7.004 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.032 0.968 31 H 0.028 0.972 32 H 0.361 0.639 33 H 0.260 0.740 34 H 0.216 0.784 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.551 -8.646 19.395 27.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.025 4.025 3 N -0.328 5.328 4 C -0.017 4.017 5 C 0.018 3.982 6 N -0.399 5.399 7 C -0.374 4.374 8 H 0.108 0.892 9 C -0.191 4.191 10 N -0.582 5.582 11 Si 0.716 3.284 12 H -0.209 1.209 13 H -0.217 1.217 14 H -0.203 1.203 15 C 0.379 3.621 16 O -0.372 6.372 17 C -0.104 4.104 18 O -0.038 6.038 19 C -0.074 4.074 20 C -0.232 4.232 21 C -0.085 4.085 22 Cl 0.025 6.975 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.107 0.893 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.194 0.806 33 H 0.070 0.930 34 H 0.233 0.767 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -17.130 -8.119 19.120 26.925 hybrid contribution -0.723 0.710 -0.448 1.108 sum -17.854 -7.409 18.672 26.876 Atomic orbital electron populations 1.22178 0.95546 1.02299 1.02323 1.21831 0.94666 0.81996 1.03988 1.47788 1.63846 1.14447 1.06717 1.21819 0.97224 0.99387 0.83308 1.20903 0.91461 0.96392 0.89478 1.42544 1.09733 1.64806 1.22841 1.19030 0.85447 1.28793 1.04085 0.89224 1.24666 0.96075 1.00515 0.97812 1.69703 1.16281 1.49048 1.23151 0.86529 0.81382 0.80547 0.79954 1.20936 1.21686 1.20336 1.16554 0.78638 0.85730 0.81208 1.90970 1.46727 1.14265 1.85213 1.21988 1.08203 0.84830 0.95418 1.84466 1.63615 1.28830 1.26939 1.24403 1.01940 1.00723 0.80381 1.21657 1.07138 0.93109 1.01304 1.21302 1.03543 0.91044 0.92634 1.98402 1.84767 1.20474 1.93887 0.92267 0.91339 0.92596 0.89255 0.89438 0.90088 0.89329 0.94994 0.95441 0.80623 0.93026 0.76733 0.81853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 9.73 37.16 0.36 -1.07 16 2 C 0.10 1.02 5.71 -4.04 -0.02 1.00 16 3 N -0.60 -8.39 2.49 -175.29 -0.44 -8.83 16 4 C 0.10 1.69 5.52 -4.04 -0.02 1.67 16 5 C 0.15 2.97 6.58 -4.04 -0.03 2.94 16 6 N -0.75 -18.54 5.41 -59.91 -0.32 -18.86 16 7 C -0.24 -7.13 10.47 -15.06 -0.16 -7.28 16 8 H 0.09 2.81 8.06 -52.48 -0.42 2.39 16 9 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 10 N -0.93 -29.87 13.97 55.49 0.78 -29.10 16 11 Si 0.89 22.46 27.73 -169.99 -4.71 17.74 16 12 H -0.28 -7.18 7.11 56.52 0.40 -6.77 16 13 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 14 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 15 C 0.59 9.24 7.58 -12.94 -0.10 9.14 16 16 O -0.50 -9.39 15.13 5.17 0.08 -9.32 16 17 C -0.05 -0.65 6.56 -36.81 -0.24 -0.89 16 18 O -0.14 -1.35 6.08 4.75 0.03 -1.32 16 19 C 0.00 -0.03 12.07 29.61 0.36 0.33 16 20 C -0.21 -1.75 10.88 -39.85 -0.43 -2.19 16 21 C -0.06 -0.67 6.75 -39.28 -0.27 -0.93 16 22 Cl 0.00 -0.06 27.86 -51.86 -1.44 -1.50 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.52 7.03 -51.93 -0.37 0.15 16 26 H 0.09 0.89 8.02 -51.93 -0.42 0.47 16 27 H 0.09 0.85 5.42 -51.93 -0.28 0.57 16 28 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 29 H 0.09 1.55 7.37 -51.93 -0.38 1.16 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.36 8.54 5.53 -40.82 -0.23 8.31 16 33 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 34 H 0.22 0.38 8.06 -52.49 -0.42 -0.05 16 35 H 0.16 0.94 8.06 -52.48 -0.42 0.52 16 LS Contribution 313.25 15.07 4.72 4.72 Total: -1.00 -35.07 313.25 -6.18 -41.25 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -4.22 Total: 2.45 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -0.64 Total: 2.77 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.01 Total: -56.79 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.11 Total: -10.63 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.71 Total: 17.74 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.44 Total: -1.50 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.07 -6.18 -41.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754065450.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.898 kcal (2) G-P(sol) polarization free energy of solvation -35.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds