Wall clock time and date at job start Tue Mar 31 2020 06:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46507 * 109.47143 * 2 1 4 4 C 1.46500 * 119.99746 * 263.23357 * 3 2 1 5 5 C 1.53000 * 109.46635 * 269.99484 * 4 3 2 6 6 N 1.46502 * 109.47010 * 179.97438 * 5 4 3 7 7 C 1.36936 * 119.99999 * 179.97438 * 6 5 4 8 8 H 1.08003 * 120.00268 * 0.02562 * 7 6 5 9 9 C 1.38818 * 120.00223 * 179.97438 * 7 6 5 10 10 N 1.31619 * 120.00138 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 119.99563 * 0.02562 * 9 7 6 12 12 H 1.48507 * 109.47398 * 89.99481 * 11 9 7 13 13 H 1.48505 * 109.47304 * 209.99421 * 11 9 7 14 14 H 1.48499 * 109.47342 * 329.99364 * 11 9 7 15 15 C 1.34769 * 119.99862 * 83.22685 * 3 2 1 16 16 O 1.21721 * 120.00031 * 183.93144 * 15 3 2 17 17 C 1.46496 * 120.00388 * 3.93149 * 15 3 2 18 18 O 1.34988 * 126.00366 * 353.48782 * 17 15 3 19 19 C 1.33944 * 109.40021 * 179.73010 * 18 17 15 20 20 C 1.35073 * 108.82184 * 0.02562 * 19 18 17 21 21 C 1.36706 * 126.00639 * 173.17182 * 17 15 3 22 22 Cl 1.73594 * 126.67214 * 0.26936 * 21 17 15 23 23 H 1.09002 * 109.47020 * 59.99877 * 1 2 3 24 24 H 1.08999 * 109.47345 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47015 * 300.00477 * 1 2 3 26 26 H 1.08997 * 109.46837 * 240.00118 * 2 1 3 27 27 H 1.08998 * 109.47276 * 119.99694 * 2 1 3 28 28 H 1.09002 * 109.47464 * 29.99621 * 4 3 2 29 29 H 1.09001 * 109.46996 * 149.99967 * 4 3 2 30 30 H 1.08994 * 109.47461 * 299.99989 * 5 4 3 31 31 H 1.09001 * 109.47034 * 60.00507 * 5 4 3 32 32 H 0.97000 * 120.00179 * 0.02562 * 6 5 4 33 33 H 0.96998 * 119.99992 * 180.02562 * 10 9 7 34 34 H 1.07995 * 125.58745 * 179.97438 * 19 18 17 35 35 H 1.08005 * 126.43692 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.4035 2.0220 -1.2599 5 6 3.8881 1.7676 -1.5284 6 7 4.2731 2.4078 -2.7886 7 6 5.5635 2.3151 -3.2374 8 1 6.2974 1.7697 -2.6625 9 6 5.9283 2.9212 -4.4318 10 7 7.1685 2.8317 -4.8634 11 14 4.6590 3.8639 -5.4264 12 1 4.6486 5.2852 -4.9959 13 1 5.0031 3.7863 -6.8690 14 1 3.3160 3.2699 -5.2053 15 6 2.1132 2.0624 1.1590 16 8 2.4504 3.2320 1.1517 17 6 1.8105 1.3954 2.4277 18 8 1.3102 0.1496 2.5696 19 6 1.1683 -0.1271 3.8724 20 6 1.5762 0.9410 4.5917 21 6 1.9905 1.9228 3.6760 22 17 2.6100 3.4993 4.0559 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8105 1.6068 -2.0749 29 1 2.2254 3.0952 -1.1911 30 1 4.4811 2.1828 -0.7136 31 1 4.0662 0.6944 -1.5973 32 1 3.6142 2.8980 -3.3048 33 1 7.4234 3.2555 -5.6978 34 1 0.7891 -1.0521 4.2807 35 1 1.5836 1.0242 5.6685 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754065450.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:29 Heat of formation + Delta-G solvation = -21.932872 kcal Electronic energy + Delta-G solvation = -20428.561119 eV Core-core repulsion = 17068.529752 eV Total energy + Delta-G solvation = -3360.031366 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.87380 -40.85986 -37.93707 -37.55813 -36.53796 -33.99802 -33.77489 -31.93313 -31.25470 -29.35742 -25.93626 -24.73807 -23.76008 -23.04679 -22.69998 -21.01876 -19.74884 -18.77300 -17.83896 -17.67191 -17.24929 -16.49916 -16.26307 -15.65089 -15.40149 -15.20242 -15.13831 -14.78614 -14.53776 -14.47945 -13.83772 -13.80154 -13.47062 -13.39480 -13.04252 -12.91392 -12.73698 -12.40540 -12.14494 -12.10349 -11.92029 -11.83807 -11.23641 -11.03124 -10.72425 -10.01370 -9.64401 -9.38547 -8.06175 -5.42325 -0.19213 0.89135 1.22252 1.36905 1.42680 1.48683 1.54169 1.90327 2.05345 2.46824 3.24959 3.34735 3.65474 3.70027 4.00188 4.08283 4.10238 4.20887 4.35882 4.38216 4.50155 4.57357 4.75344 4.82674 4.94137 5.01078 5.03978 5.15617 5.36357 5.41964 5.67307 5.70507 6.16420 6.19943 6.87073 7.02410 7.74811 7.96702 9.15197 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.022892 B = 0.004066 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.846768 B = 6884.999739 C = 7536.895456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.092 3.908 3 N -0.594 5.594 4 C 0.118 3.882 5 C 0.150 3.850 6 N -0.754 5.754 7 C -0.243 4.243 8 H 0.052 0.948 9 C -0.061 4.061 10 N -0.982 5.982 11 Si 0.959 3.041 12 H -0.281 1.281 13 H -0.290 1.290 14 H -0.244 1.244 15 C 0.585 3.415 16 O -0.546 6.546 17 C -0.083 4.083 18 O -0.139 6.139 19 C 0.033 3.967 20 C -0.226 4.226 21 C -0.064 4.064 22 Cl -0.027 7.027 23 H 0.053 0.947 24 H 0.095 0.905 25 H 0.049 0.951 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.109 0.891 29 H 0.074 0.926 30 H 0.003 0.997 31 H 0.035 0.965 32 H 0.369 0.631 33 H 0.260 0.740 34 H 0.272 0.728 35 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.696 -10.569 20.212 30.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.029 4.029 3 N -0.326 5.326 4 C -0.005 4.005 5 C 0.022 3.978 6 N -0.400 5.400 7 C -0.374 4.374 8 H 0.070 0.930 9 C -0.252 4.252 10 N -0.632 5.632 11 Si 0.785 3.215 12 H -0.207 1.207 13 H -0.216 1.216 14 H -0.168 1.168 15 C 0.374 3.626 16 O -0.425 6.425 17 C -0.137 4.137 18 O -0.034 6.034 19 C -0.036 4.036 20 C -0.245 4.245 21 C -0.094 4.094 22 Cl 0.002 6.998 23 H 0.072 0.928 24 H 0.113 0.887 25 H 0.068 0.932 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.127 0.873 29 H 0.092 0.908 30 H 0.022 0.978 31 H 0.053 0.947 32 H 0.203 0.797 33 H 0.069 0.931 34 H 0.288 0.712 35 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -20.326 -10.094 19.967 30.228 hybrid contribution 0.296 1.150 -0.526 1.299 sum -20.030 -8.944 19.442 29.312 Atomic orbital electron populations 1.22114 0.93788 1.03823 1.01761 1.22116 0.96046 0.79862 1.04860 1.47876 1.63368 1.15734 1.05592 1.21517 0.94405 0.99177 0.85361 1.20951 0.94145 0.95959 0.86736 1.42477 1.08199 1.65202 1.24148 1.18973 0.86781 1.27879 1.03776 0.93031 1.25567 0.98471 1.01969 0.99225 1.69890 1.18890 1.50584 1.23860 0.85360 0.79862 0.78707 0.77576 1.20737 1.21629 1.16766 1.16960 0.77804 0.85455 0.82395 1.90927 1.49047 1.16363 1.86165 1.21357 1.11546 0.86563 0.94185 1.84448 1.63204 1.27082 1.28660 1.25522 0.97941 1.01426 0.78673 1.22016 1.07673 0.92482 1.02353 1.21733 1.03262 0.90676 0.93740 1.98389 1.85133 1.22390 1.93930 0.92782 0.88667 0.93222 0.88521 0.88466 0.87315 0.90799 0.97850 0.94710 0.79709 0.93093 0.71232 0.79383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.73 71.98 0.70 -1.54 16 2 C 0.09 1.71 5.71 86.38 0.49 2.20 16 3 N -0.59 -16.33 2.49 -826.71 -2.06 -18.39 16 4 C 0.12 3.76 5.52 86.38 0.48 4.23 16 5 C 0.15 6.15 6.58 86.38 0.57 6.72 16 6 N -0.75 -37.05 5.41 -343.45 -1.86 -38.90 16 7 C -0.24 -14.56 10.47 84.04 0.88 -13.68 16 8 H 0.05 3.40 8.06 -2.91 -0.02 3.38 16 9 C -0.06 -3.67 5.50 84.86 0.47 -3.21 16 10 N -0.98 -64.43 13.97 21.65 0.30 -64.13 16 11 Si 0.96 46.13 27.73 68.60 1.90 48.03 16 12 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 13 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 14 H -0.24 -10.28 6.52 99.48 0.65 -9.64 16 15 C 0.59 18.47 7.58 86.40 0.65 19.12 16 16 O -0.55 -21.61 15.13 -4.41 -0.07 -21.68 16 17 C -0.08 -2.05 6.56 24.06 0.16 -1.90 16 18 O -0.14 -2.18 6.08 -5.93 -0.04 -2.22 16 19 C 0.03 0.28 12.07 67.09 0.81 1.09 16 20 C -0.23 -3.03 10.88 22.09 0.24 -2.79 16 21 C -0.06 -1.50 6.75 22.46 0.15 -1.35 16 22 Cl -0.03 -0.75 27.86 -2.72 -0.08 -0.83 16 23 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.05 0.79 7.03 -2.38 -0.02 0.77 16 26 H 0.10 1.66 8.02 -2.39 -0.02 1.64 16 27 H 0.10 1.63 5.42 -2.39 -0.01 1.61 16 28 H 0.11 2.84 8.07 -2.39 -0.02 2.83 16 29 H 0.07 2.59 7.37 -2.39 -0.02 2.57 16 30 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.37 16.87 5.53 -92.71 -0.51 16.36 16 33 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 34 H 0.27 -0.97 8.06 -2.91 -0.02 -1.00 16 35 H 0.19 1.49 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -80.85 313.25 4.26 -76.59 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.55 Total: 12.63 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 5.60 Total: 8.89 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -3.61 Total: -121.42 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.10 Total: -23.89 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.90 Total: 48.03 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.08 Total: -0.83 kcal Total: -80.85 4.26 -76.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754065450.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.658 kcal (2) G-P(sol) polarization free energy of solvation -80.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds