Wall clock time and date at job start Tue Mar 31 2020 06:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47329 * 2 1 4 4 N 1.46507 * 109.47135 * 119.99802 * 2 1 3 5 5 C 1.34774 * 119.99595 * 275.00199 * 4 2 1 6 6 O 1.21712 * 120.00250 * 359.97438 * 5 4 2 7 7 C 1.46529 * 119.99554 * 179.97438 * 5 4 2 8 8 C 1.36611 * 125.97741 * 179.97438 * 7 5 4 9 9 C 1.40245 * 106.73911 * 179.97438 * 8 7 5 10 10 C 1.35374 * 107.11733 * 0.02562 * 9 8 7 11 11 Cl 1.73603 * 125.63301 * 180.02562 * 10 9 8 12 12 O 1.33955 * 108.73184 * 359.77017 * 10 9 8 13 13 C 1.52998 * 109.47443 * 239.99657 * 2 1 3 14 14 H 1.09003 * 109.47082 * 300.00051 * 13 2 1 15 15 C 1.52995 * 109.47443 * 179.97438 * 13 2 1 16 16 N 1.46498 * 109.47009 * 59.99875 * 13 2 1 17 17 C 1.36935 * 120.00239 * 204.99963 * 16 13 2 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 13 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 13 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72270 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72118 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72153 * 21 19 17 25 25 H 1.08995 * 109.47629 * 300.00460 * 1 2 3 26 26 H 1.09003 * 109.46933 * 60.00077 * 1 2 3 27 27 H 1.08996 * 109.47329 * 180.02562 * 1 2 3 28 28 H 0.96995 * 119.99636 * 94.99558 * 4 2 1 29 29 H 1.08004 * 126.63066 * 359.97412 * 8 7 5 30 30 H 1.08005 * 126.44138 * 180.02562 * 9 8 7 31 31 H 1.09004 * 109.47411 * 179.97438 * 15 13 2 32 32 H 1.08996 * 109.47329 * 300.00343 * 15 13 2 33 33 H 1.09003 * 109.46933 * 60.00266 * 15 13 2 34 34 H 0.97004 * 119.99747 * 25.00702 * 16 13 2 35 35 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8579 1.1629 2.4116 7 6 2.6349 -0.7090 3.5537 8 6 2.8119 -0.1495 4.7873 9 6 3.2899 -1.1660 5.6271 10 6 3.3838 -2.2900 4.8785 11 17 3.9265 -3.8391 5.4436 12 8 2.9835 -2.0107 3.6310 13 6 2.0400 -0.7213 -1.2492 14 1 1.6767 -1.7490 -1.2491 15 6 3.5700 -0.7207 -1.2495 16 7 1.5517 -0.0308 -2.4454 17 6 1.4210 -0.7139 -3.6249 18 1 1.6775 -1.7619 -3.6733 19 6 0.9588 -0.0595 -4.7585 20 7 0.6410 1.2164 -4.6982 21 14 0.7798 -0.9916 -6.3674 22 1 2.0453 -0.8957 -7.1384 23 1 0.4805 -2.4179 -6.0825 24 1 -0.3288 -0.4021 -7.1604 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 2.2489 -1.6317 1.1527 29 1 2.6207 0.8772 5.0627 30 1 3.5368 -1.0700 6.6741 31 1 3.9334 -1.2350 -2.1392 32 1 3.9330 0.3070 -1.2497 33 1 3.9337 -1.2343 -0.3595 34 1 1.3211 0.9104 -2.4018 35 1 0.7336 1.7003 -3.8626 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755225509.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:21 Heat of formation + Delta-G solvation = -12.668498 kcal Electronic energy + Delta-G solvation = -20085.725522 eV Core-core repulsion = 16726.095889 eV Total energy + Delta-G solvation = -3359.629633 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.11916 -39.72140 -37.48595 -36.96588 -34.36044 -33.56216 -32.04345 -30.41313 -29.16091 -28.17938 -24.25219 -23.79930 -22.44802 -22.22154 -20.50840 -20.28640 -18.77969 -17.54899 -17.09853 -16.95607 -15.93186 -15.08300 -14.67776 -14.27847 -13.90536 -13.85305 -13.63133 -13.48317 -13.42400 -13.17797 -12.74010 -12.58738 -12.03824 -11.86006 -11.79250 -11.33501 -11.01198 -10.71757 -10.60026 -10.50892 -10.32098 -10.15070 -10.02569 -9.29806 -9.16316 -8.97892 -8.82534 -7.09813 -6.13023 -3.14452 0.59619 0.65631 1.82311 2.67780 3.00128 3.22700 3.50431 3.54865 3.68857 4.36488 4.54245 4.65822 5.00184 5.10130 5.19107 5.36573 5.42965 5.48498 5.65657 5.71227 5.78933 5.97733 6.01775 6.18032 6.26147 6.27789 6.36089 6.46333 6.66233 6.75722 6.90398 7.41274 7.76944 7.99598 8.72020 9.16855 10.03200 10.17180 11.35088 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.029934 B = 0.003234 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.181890 B = 8655.465355 C = 9271.263476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.133 3.867 3 H 0.088 0.912 4 N -0.702 5.702 5 C 0.600 3.400 6 O -0.515 6.515 7 C -0.050 4.050 8 C -0.118 4.118 9 C -0.183 4.183 10 C 0.045 3.955 11 Cl 0.033 6.967 12 O -0.155 6.155 13 C 0.174 3.826 14 H 0.053 0.947 15 C -0.165 4.165 16 N -0.729 5.729 17 C -0.332 4.332 18 H 0.065 0.935 19 C -0.043 4.043 20 N -0.942 5.942 21 Si 1.083 2.917 22 H -0.296 1.296 23 H -0.295 1.295 24 H -0.288 1.288 25 H 0.050 0.950 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.404 0.596 29 H 0.171 0.829 30 H 0.168 0.832 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.036 0.964 34 H 0.368 0.632 35 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.717 -7.989 21.922 24.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.029 3.971 3 H 0.106 0.894 4 N -0.352 5.352 5 C 0.385 3.615 6 O -0.393 6.393 7 C -0.103 4.103 8 C -0.138 4.138 9 C -0.203 4.203 10 C -0.033 4.033 11 Cl 0.062 6.938 12 O -0.052 6.052 13 C 0.063 3.937 14 H 0.071 0.929 15 C -0.225 4.225 16 N -0.372 5.372 17 C -0.462 4.462 18 H 0.083 0.917 19 C -0.241 4.241 20 N -0.587 5.587 21 Si 0.913 3.087 22 H -0.223 1.223 23 H -0.222 1.222 24 H -0.214 1.214 25 H 0.069 0.931 26 H 0.098 0.902 27 H 0.073 0.927 28 H 0.239 0.761 29 H 0.188 0.812 30 H 0.185 0.815 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.202 0.798 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.104 -7.588 20.068 22.053 hybrid contribution 0.745 -0.605 1.854 2.088 sum 5.849 -8.193 21.922 24.123 Atomic orbital electron populations 1.22055 0.94497 1.02139 1.02422 1.21489 0.94739 0.97642 0.83266 0.89359 1.46022 1.65431 1.14281 1.09420 1.16449 0.78255 0.85803 0.81014 1.90914 1.50782 1.13947 1.83635 1.22390 1.09242 0.80698 0.97956 1.21948 0.99861 1.01377 0.90662 1.21543 1.06693 0.90282 1.01820 1.22845 1.05493 0.90695 0.84274 1.98455 1.87041 1.23885 1.84455 1.84000 1.64121 1.27482 1.29586 1.20323 0.92198 0.95628 0.85502 0.92876 1.22444 0.98849 1.01125 1.00094 1.42288 1.79373 1.09806 1.05745 1.20020 1.42300 0.95125 0.88795 0.91662 1.25762 0.99216 0.97493 1.01583 1.70849 1.50891 1.08413 1.28572 0.83198 0.76486 0.73810 0.75163 1.22332 1.22156 1.21389 0.93129 0.90190 0.92746 0.76146 0.81155 0.81468 0.92413 0.93432 0.94459 0.79779 0.93253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.33 37.16 0.35 -2.24 16 2 C 0.13 2.23 2.21 -67.93 -0.15 2.08 16 3 H 0.09 1.63 7.57 -51.93 -0.39 1.23 16 4 N -0.70 -9.90 4.38 -55.16 -0.24 -10.14 16 5 C 0.60 8.77 7.75 -12.92 -0.10 8.67 16 6 O -0.52 -9.00 16.53 5.18 0.09 -8.91 16 7 C -0.05 -0.61 7.13 -36.83 -0.26 -0.88 16 8 C -0.12 -1.21 10.62 -39.42 -0.42 -1.63 16 9 C -0.18 -1.56 10.84 -39.85 -0.43 -1.99 16 10 C 0.05 0.44 7.93 29.71 0.24 0.67 16 11 Cl 0.03 0.26 29.30 -51.86 -1.52 -1.26 16 12 O -0.15 -1.77 10.40 4.74 0.05 -1.72 16 13 C 0.17 3.32 2.52 -67.93 -0.17 3.15 16 14 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 15 C -0.16 -2.94 9.33 37.16 0.35 -2.59 16 16 N -0.73 -17.48 4.42 -53.43 -0.24 -17.72 16 17 C -0.33 -9.01 9.93 -15.06 -0.15 -9.16 16 18 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 19 C -0.04 -1.21 5.50 -17.43 -0.10 -1.31 16 20 N -0.94 -28.67 13.70 55.49 0.76 -27.91 16 21 Si 1.08 25.59 29.92 -169.99 -5.09 20.50 16 22 H -0.30 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.08 1.52 7.45 -51.93 -0.39 1.13 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.40 4.95 8.14 -40.82 -0.33 4.61 16 29 H 0.17 1.53 8.06 -52.48 -0.42 1.11 16 30 H 0.17 0.93 8.06 -52.48 -0.42 0.50 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.04 0.55 7.45 -51.93 -0.39 0.17 16 34 H 0.37 9.22 6.42 -40.82 -0.26 8.96 16 35 H 0.26 7.67 6.77 -40.82 -0.28 7.40 16 LS Contribution 321.44 15.07 4.84 4.84 Total: -1.00 -31.20 321.44 -6.40 -37.60 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -4.20 Total: 9.95 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -0.85 Total: -5.22 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 0.28 Total: -55.77 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.13 Total: -10.63 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.09 Total: 20.50 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -1.52 Total: -1.26 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.20 -6.40 -37.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755225509.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.928 kcal (2) G-P(sol) polarization free energy of solvation -31.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds