Wall clock time and date at job start Tue Mar 31 2020 06:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47329 * 2 1 4 4 N 1.46507 * 109.47135 * 119.99802 * 2 1 3 5 5 C 1.34774 * 119.99595 * 275.00199 * 4 2 1 6 6 O 1.21712 * 120.00250 * 359.97438 * 5 4 2 7 7 C 1.46529 * 119.99554 * 179.97438 * 5 4 2 8 8 C 1.36611 * 125.97741 * 179.97438 * 7 5 4 9 9 C 1.40245 * 106.73911 * 179.97438 * 8 7 5 10 10 C 1.35374 * 107.11733 * 0.02562 * 9 8 7 11 11 Cl 1.73603 * 125.63301 * 180.02562 * 10 9 8 12 12 O 1.33955 * 108.73184 * 359.77017 * 10 9 8 13 13 C 1.52998 * 109.47443 * 239.99657 * 2 1 3 14 14 H 1.09003 * 109.47082 * 300.00051 * 13 2 1 15 15 C 1.52995 * 109.47443 * 179.97438 * 13 2 1 16 16 N 1.46498 * 109.47009 * 59.99875 * 13 2 1 17 17 C 1.36935 * 120.00239 * 204.99963 * 16 13 2 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 13 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 13 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72270 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72118 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72153 * 21 19 17 25 25 H 1.08995 * 109.47629 * 300.00460 * 1 2 3 26 26 H 1.09003 * 109.46933 * 60.00077 * 1 2 3 27 27 H 1.08996 * 109.47329 * 180.02562 * 1 2 3 28 28 H 0.96995 * 119.99636 * 94.99558 * 4 2 1 29 29 H 1.08004 * 126.63066 * 359.97412 * 8 7 5 30 30 H 1.08005 * 126.44138 * 180.02562 * 9 8 7 31 31 H 1.09004 * 109.47411 * 179.97438 * 15 13 2 32 32 H 1.08996 * 109.47329 * 300.00343 * 15 13 2 33 33 H 1.09003 * 109.46933 * 60.00266 * 15 13 2 34 34 H 0.97004 * 119.99747 * 25.00702 * 16 13 2 35 35 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8579 1.1629 2.4116 7 6 2.6349 -0.7090 3.5537 8 6 2.8119 -0.1495 4.7873 9 6 3.2899 -1.1660 5.6271 10 6 3.3838 -2.2900 4.8785 11 17 3.9265 -3.8391 5.4436 12 8 2.9835 -2.0107 3.6310 13 6 2.0400 -0.7213 -1.2492 14 1 1.6767 -1.7490 -1.2491 15 6 3.5700 -0.7207 -1.2495 16 7 1.5517 -0.0308 -2.4454 17 6 1.4210 -0.7139 -3.6249 18 1 1.6775 -1.7619 -3.6733 19 6 0.9588 -0.0595 -4.7585 20 7 0.6410 1.2164 -4.6982 21 14 0.7798 -0.9916 -6.3674 22 1 2.0453 -0.8957 -7.1384 23 1 0.4805 -2.4179 -6.0825 24 1 -0.3288 -0.4021 -7.1604 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 2.2489 -1.6317 1.1527 29 1 2.6207 0.8772 5.0627 30 1 3.5368 -1.0700 6.6741 31 1 3.9334 -1.2350 -2.1392 32 1 3.9330 0.3070 -1.2497 33 1 3.9337 -1.2343 -0.3595 34 1 1.3211 0.9104 -2.4018 35 1 0.7336 1.7003 -3.8626 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755225509.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:21 Heat of formation + Delta-G solvation = -33.203308 kcal Electronic energy + Delta-G solvation = -20086.615978 eV Core-core repulsion = 16726.095889 eV Total energy + Delta-G solvation = -3360.520089 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.92811 -40.95269 -38.49954 -38.14690 -35.99359 -34.41620 -33.71037 -31.68919 -30.30293 -29.94191 -25.82456 -25.36851 -23.70401 -23.10753 -21.73764 -21.54563 -19.80936 -19.50612 -18.02824 -17.81677 -17.36514 -16.63694 -15.96694 -15.81482 -15.44739 -15.25794 -14.77938 -14.59223 -14.39384 -14.25713 -14.21135 -13.60733 -13.30955 -13.24386 -12.93834 -12.63962 -12.54158 -12.51617 -12.31057 -11.86518 -11.71213 -11.59213 -11.26767 -11.22721 -10.99540 -10.39166 -9.72441 -9.13501 -8.35682 -5.31014 -0.28985 -0.06845 1.06304 1.60052 1.67066 1.70826 1.84482 1.94260 2.22955 2.74065 3.43223 3.54526 3.65305 3.69904 3.82197 4.05575 4.19544 4.23327 4.34593 4.46391 4.62885 4.71521 4.73991 4.81718 4.89707 5.01084 5.07596 5.19170 5.29039 5.37640 5.46423 5.63419 6.28576 6.51861 6.86419 7.09511 7.98743 8.10485 9.15967 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.029934 B = 0.003234 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.181890 B = 8655.465355 C = 9271.263476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.149 3.851 3 H 0.071 0.929 4 N -0.694 5.694 5 C 0.604 3.396 6 O -0.550 6.550 7 C -0.078 4.078 8 C -0.106 4.106 9 C -0.173 4.173 10 C 0.042 3.958 11 Cl 0.050 6.950 12 O -0.164 6.164 13 C 0.173 3.827 14 H 0.058 0.942 15 C -0.155 4.155 16 N -0.740 5.740 17 C -0.324 4.324 18 H 0.070 0.930 19 C -0.104 4.104 20 N -0.977 5.977 21 Si 1.128 2.872 22 H -0.287 1.287 23 H -0.271 1.271 24 H -0.296 1.296 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.415 0.585 29 H 0.181 0.819 30 H 0.201 0.799 31 H 0.043 0.957 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.360 0.640 35 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.591 -9.855 23.779 26.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.043 3.957 3 H 0.089 0.911 4 N -0.345 5.345 5 C 0.391 3.609 6 O -0.430 6.430 7 C -0.130 4.130 8 C -0.127 4.127 9 C -0.193 4.193 10 C -0.036 4.036 11 Cl 0.079 6.921 12 O -0.062 6.062 13 C 0.064 3.936 14 H 0.076 0.924 15 C -0.215 4.215 16 N -0.383 5.383 17 C -0.455 4.455 18 H 0.088 0.912 19 C -0.295 4.295 20 N -0.625 5.625 21 Si 0.954 3.046 22 H -0.214 1.214 23 H -0.196 1.196 24 H -0.223 1.223 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.252 0.748 29 H 0.199 0.801 30 H 0.218 0.782 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.192 0.808 35 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.013 -9.512 21.979 24.693 hybrid contribution 0.541 -0.114 1.466 1.567 sum 6.554 -9.626 23.445 26.178 Atomic orbital electron populations 1.21946 0.94568 1.02361 1.01398 1.21049 0.94512 0.96622 0.83487 0.91126 1.45797 1.65440 1.14648 1.08588 1.16644 0.77404 0.85440 0.81454 1.90893 1.52336 1.15465 1.84337 1.21888 1.12043 0.81496 0.97585 1.22257 0.98093 1.02217 0.90100 1.21912 1.05373 0.88996 1.03002 1.23244 1.04774 0.91802 0.83823 1.98468 1.86734 1.22855 1.84056 1.83958 1.64615 1.26995 1.30644 1.20476 0.92948 0.95473 0.84709 0.92395 1.22294 0.97448 1.00733 1.01001 1.42450 1.79680 1.09560 1.06617 1.20344 1.40099 0.95342 0.89736 0.91198 1.27113 0.99697 0.97593 1.05090 1.70957 1.53694 1.09722 1.28162 0.82602 0.76331 0.73877 0.71797 1.21439 1.19643 1.22294 0.92564 0.92732 0.91828 0.74832 0.80114 0.78237 0.93815 0.94476 0.91140 0.80800 0.94502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.91 9.33 71.98 0.67 -4.24 16 2 C 0.15 4.98 2.21 44.99 0.10 5.08 16 3 H 0.07 2.66 7.57 -2.39 -0.02 2.64 16 4 N -0.69 -18.91 4.38 -446.64 -1.96 -20.87 16 5 C 0.60 17.19 7.75 86.40 0.67 17.86 16 6 O -0.55 -19.19 16.53 -4.39 -0.07 -19.26 16 7 C -0.08 -1.79 7.13 24.05 0.17 -1.62 16 8 C -0.11 -1.94 10.62 22.38 0.24 -1.70 16 9 C -0.17 -2.39 10.84 22.10 0.24 -2.15 16 10 C 0.04 0.69 7.93 67.16 0.53 1.23 16 11 Cl 0.05 0.65 29.30 -2.72 -0.08 0.57 16 12 O -0.16 -3.43 10.40 -5.94 -0.06 -3.49 16 13 C 0.17 6.52 2.52 44.99 0.11 6.63 16 14 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 15 C -0.15 -5.37 9.33 71.98 0.67 -4.70 16 16 N -0.74 -36.02 4.42 -322.95 -1.43 -37.44 16 17 C -0.32 -17.61 9.93 84.03 0.83 -16.78 16 18 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 19 C -0.10 -5.93 5.50 84.86 0.47 -5.46 16 20 N -0.98 -60.86 13.70 21.65 0.30 -60.56 16 21 Si 1.13 51.48 29.92 68.60 2.05 53.53 16 22 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 24 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 25 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.05 2.13 7.45 -2.39 -0.02 2.11 16 27 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.41 9.47 8.14 -92.71 -0.75 8.72 16 29 H 0.18 2.86 8.06 -2.91 -0.02 2.83 16 30 H 0.20 1.35 8.06 -2.91 -0.02 1.32 16 31 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.07 1.96 7.45 -2.39 -0.02 1.94 16 34 H 0.36 18.66 6.42 -92.71 -0.59 18.06 16 35 H 0.24 15.21 6.77 -92.71 -0.63 14.58 16 Total: -1.00 -67.52 321.44 3.38 -64.14 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: -0.08 Total: 29.22 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: 4.71 Total: -5.83 kcal Atomic # 7 Polarization: -115.79 SS G_CDS: -3.09 Total: -118.88 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.13 Total: -22.75 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 2.05 Total: 53.53 kcal Atomic # 17 Polarization: 0.65 SS G_CDS: -0.08 Total: 0.57 kcal Total: -67.52 3.38 -64.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755225509.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.936 kcal (2) G-P(sol) polarization free energy of solvation -67.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds