Wall clock time and date at job start Tue Mar 31 2020 05:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86799 * 119.99677 * 2 1 4 4 H 1.48500 * 109.47185 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47250 * 299.99856 * 3 2 1 6 6 H 1.48497 * 109.47497 * 60.00276 * 3 2 1 7 7 C 1.39928 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99794 * 162.61524 * 7 2 1 9 9 C 1.41428 * 120.00123 * 342.61997 * 7 2 1 10 10 C 1.40795 * 120.17869 * 154.94088 * 9 7 2 11 11 C 1.37710 * 120.04438 * 179.97438 * 10 9 7 12 12 C 1.38380 * 120.40852 * 359.73878 * 11 10 9 13 13 C 1.39893 * 120.35092 * 0.51821 * 12 11 10 14 14 C 1.47850 * 120.02666 * 179.76387 * 13 12 11 15 15 N 1.32114 * 126.66923 * 359.72059 * 14 13 12 16 16 C 1.34208 * 105.54760 * 179.97438 * 15 14 13 17 17 C 1.50703 * 126.19078 * 180.02562 * 16 15 14 18 18 H 1.09003 * 109.86679 * 343.99757 * 17 16 15 19 19 C 1.54100 * 109.87767 * 104.99927 * 17 16 15 20 20 C 1.54812 * 104.18838 * 121.45588 * 19 17 16 21 21 C 1.55001 * 102.08890 * 20.87779 * 20 19 17 22 22 O 1.43737 * 109.87938 * 222.83327 * 17 16 15 23 23 N 1.30038 * 107.62419 * 359.97438 * 16 15 14 24 24 O 1.21292 * 110.47509 * 359.97438 * 23 16 15 25 25 C 1.39027 * 119.95284 * 359.48188 * 13 12 11 26 26 H 0.96995 * 119.99854 * 359.97438 * 1 2 3 27 27 H 1.08008 * 119.98128 * 359.97438 * 10 9 7 28 28 H 1.07997 * 119.79857 * 179.97438 * 11 10 9 29 29 H 1.07999 * 119.82341 * 180.28117 * 12 11 10 30 30 H 1.09002 * 110.48677 * 240.13208 * 19 17 16 31 31 H 1.08998 * 110.48912 * 2.78136 * 19 17 16 32 32 H 1.08995 * 110.90541 * 139.07879 * 20 19 17 33 33 H 1.09003 * 110.90663 * 262.68319 * 20 19 17 34 34 H 1.09005 * 110.61427 * 81.47705 * 21 20 19 35 35 H 1.09000 * 110.61858 * 204.31647 * 21 20 19 36 36 H 1.08001 * 120.20221 * 180.27430 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8835 2.3965 -1.2126 6 1 1.8835 2.3965 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0510 -1.2332 -0.2789 9 6 1.3493 -2.4085 0.3669 10 6 1.8194 -3.6485 -0.1061 11 6 1.1763 -4.8121 0.2528 12 6 0.0697 -4.7734 1.0828 13 6 -0.4149 -3.5502 1.5582 14 6 -1.6009 -3.5168 2.4404 15 7 -2.3041 -4.5549 2.8566 16 6 -3.2759 -4.0448 3.6290 17 6 -4.3469 -4.8272 4.3445 18 1 -4.4063 -5.8351 3.9337 19 6 -4.0295 -4.8932 5.8510 20 6 -5.2648 -4.2507 6.5276 21 6 -6.3469 -4.3896 5.4265 22 8 -5.6139 -4.1632 4.2034 23 7 -3.1256 -2.7533 3.6493 24 8 -2.1712 -2.4266 2.9757 25 6 0.2230 -2.3664 1.2053 26 1 -0.4850 0.8400 0.0004 27 1 2.6850 -3.6872 -0.7509 28 1 1.5400 -5.7610 -0.1126 29 1 -0.4247 -5.6921 1.3620 30 1 -3.9143 -5.9286 6.1716 31 1 -3.1299 -4.3206 6.0768 32 1 -5.5485 -4.8026 7.4237 33 1 -5.0793 -3.2022 6.7606 34 1 -6.7779 -5.3908 5.4361 35 1 -7.1247 -3.6369 5.5557 36 1 -0.1451 -1.4202 1.5736 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274212607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:25 Heat of formation + Delta-G solvation = 37.602209 kcal Electronic energy + Delta-G solvation = -21539.620610 eV Core-core repulsion = 18184.603728 eV Total energy + Delta-G solvation = -3355.016882 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.92645 -39.57029 -37.74248 -35.30534 -33.91564 -32.61690 -32.23161 -29.88014 -29.72355 -28.89069 -25.49721 -24.17259 -23.74670 -22.29145 -21.60737 -20.79765 -19.97762 -17.83015 -17.48465 -17.06065 -16.39483 -16.03050 -15.54810 -15.10881 -14.81008 -14.38757 -13.84877 -13.67928 -13.39119 -12.87981 -12.63223 -12.23486 -12.02377 -11.97963 -11.88489 -11.50426 -11.49371 -11.19345 -11.01885 -11.01048 -10.82262 -10.62007 -10.49974 -10.06065 -9.89375 -9.80192 -9.70691 -9.25478 -7.63579 -7.60452 -6.89488 -4.51561 1.33629 2.30167 2.69498 3.02908 3.04269 3.08986 3.22079 3.41471 3.54470 3.85683 4.02866 4.30275 4.48204 4.62275 4.65529 4.71341 5.01821 5.08379 5.42348 5.45005 5.45634 5.53667 5.70799 5.78679 5.84984 6.06178 6.14863 6.31940 6.43746 6.60649 6.66069 6.84530 6.93566 7.10201 7.23045 7.58622 7.71656 7.81106 8.00533 8.37008 8.66560 8.70758 8.72974 10.05784 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.022957 B = 0.003977 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.391209 B = 7039.230133 C = 7964.708815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.458 4.458 8 H 0.084 0.916 9 C 0.102 3.898 10 C -0.199 4.199 11 C -0.097 4.097 12 C -0.187 4.187 13 C -0.033 4.033 14 C 0.267 3.733 15 N -0.494 5.494 16 C 0.158 3.842 17 C 0.176 3.824 18 H 0.101 0.899 19 C -0.144 4.144 20 C -0.153 4.153 21 C 0.046 3.954 22 O -0.362 6.362 23 N -0.380 5.380 24 O 0.080 5.920 25 C -0.112 4.112 26 H 0.285 0.715 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.723 -5.935 9.178 12.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.487 4.487 8 H 0.102 0.898 9 C 0.099 3.901 10 C -0.219 4.219 11 C -0.116 4.116 12 C -0.208 4.208 13 C -0.036 4.036 14 C 0.053 3.947 15 N -0.229 5.229 16 C -0.116 4.116 17 C 0.116 3.884 18 H 0.118 0.882 19 C -0.183 4.183 20 C -0.191 4.191 21 C -0.030 4.030 22 O -0.280 6.280 23 N -0.089 5.089 24 O 0.021 5.979 25 C -0.134 4.134 26 H 0.096 0.904 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.124 0.876 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.114 0.886 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.697 -5.555 9.486 13.420 hybrid contribution 0.417 0.738 -0.034 0.848 sum -7.280 -4.817 9.453 12.867 Atomic orbital electron populations 1.69772 1.07625 1.29785 1.34209 1.25950 0.94771 1.01593 0.92108 0.86224 0.80923 0.80701 0.78746 1.18281 1.19877 1.19536 1.19611 0.98167 0.90836 1.40104 0.89834 1.17482 0.90897 0.92606 0.89094 1.21219 1.03152 0.92698 1.04863 1.20482 0.95799 0.97117 0.98164 1.20339 1.00333 0.94821 1.05261 1.17206 0.91036 0.96162 0.99215 1.26970 0.95114 0.79295 0.93328 1.72044 1.07075 1.28771 1.14986 1.25323 0.98158 0.88605 0.99471 1.20669 0.80302 0.93675 0.93727 0.88175 1.22966 0.99828 1.02626 0.92838 1.23147 0.94682 1.02441 0.98807 1.23601 0.94916 1.01503 0.82998 1.88978 1.26551 1.75335 1.37130 1.74561 1.04279 1.15948 1.14115 1.85434 1.30842 1.35481 1.46120 1.21598 0.97789 0.95540 0.98431 0.90410 0.88146 0.88175 0.87631 0.89437 0.90139 0.89784 0.90136 0.91727 0.88575 0.85068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.66 10.97 55.55 0.61 -19.05 16 2 C 0.07 1.78 5.14 -17.35 -0.09 1.69 16 3 Si 0.91 17.85 29.59 -169.99 -5.03 12.82 16 4 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 5 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.46 -11.36 9.05 -37.74 -0.34 -11.70 16 8 H 0.08 1.97 7.90 -52.48 -0.41 1.56 16 9 C 0.10 2.53 5.57 -106.88 -0.59 1.94 16 10 C -0.20 -4.48 9.78 -38.81 -0.38 -4.86 16 11 C -0.10 -2.02 10.01 -39.72 -0.40 -2.42 16 12 C -0.19 -4.04 9.71 -38.91 -0.38 -4.42 16 13 C -0.03 -0.77 5.87 -105.05 -0.62 -1.39 16 14 C 0.27 5.94 8.01 -13.84 -0.11 5.83 16 15 N -0.49 -10.29 11.24 -10.16 -0.11 -10.40 16 16 C 0.16 3.04 6.88 -156.55 -1.08 1.96 16 17 C 0.18 2.60 3.99 -27.31 -0.11 2.49 16 18 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 19 C -0.14 -1.64 6.63 -25.20 -0.17 -1.81 16 20 C -0.15 -1.43 7.15 -24.72 -0.18 -1.61 16 21 C 0.05 0.47 7.72 38.21 0.29 0.76 16 22 O -0.36 -5.50 11.17 -35.23 -0.39 -5.90 16 23 N -0.38 -7.95 12.15 31.18 0.38 -7.57 16 24 O 0.08 1.78 11.12 16.71 0.19 1.97 16 25 C -0.11 -2.78 8.37 -38.45 -0.32 -3.10 16 26 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 27 H 0.10 2.08 8.06 -52.48 -0.42 1.66 16 28 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 29 H 0.11 2.14 7.86 -52.49 -0.41 1.73 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.04 7.69 -51.93 -0.40 0.64 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.13 3.38 6.06 -52.49 -0.32 3.07 16 LS Contribution 314.21 15.07 4.74 4.74 Total: -1.00 -27.82 314.21 -8.15 -35.98 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -4.06 Total: 4.05 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -4.46 Total: -16.63 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.87 Total: -37.02 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: -0.21 Total: -3.93 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.82 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.82 -8.15 -35.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274212607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.579 kcal (2) G-P(sol) polarization free energy of solvation -27.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds