Wall clock time and date at job start Tue Mar 31 2020 05:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39675 * 120.00121 * 87.28526 * 3 2 1 5 5 C 1.37728 * 119.98890 * 179.71397 * 4 3 2 6 6 C 1.39630 * 120.00828 * 0.58220 * 5 4 3 7 7 C 1.47905 * 119.99683 * 179.69478 * 6 5 4 8 8 O 1.21539 * 120.00188 * 204.58461 * 7 6 5 9 9 N 1.34777 * 119.99942 * 24.58562 * 7 6 5 10 10 C 1.47421 * 125.64994 * 5.43720 * 9 7 6 11 11 C 1.55129 * 104.72475 * 155.81670 * 10 9 7 12 12 C 1.55157 * 101.48484 * 37.29688 * 11 10 9 13 13 O 1.42900 * 110.72091 * 82.69755 * 12 11 10 14 14 C 1.50700 * 110.71900 * 205.96964 * 12 11 10 15 15 H 1.07993 * 120.00211 * 354.97462 * 14 12 11 16 16 C 1.37882 * 119.99822 * 174.97851 * 14 12 11 17 17 N 1.31518 * 119.99968 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 119.99926 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47123 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47300 * 119.99467 * 18 16 14 21 21 H 1.48500 * 109.46934 * 239.99670 * 18 16 14 22 22 C 1.47021 * 125.64801 * 185.74698 * 9 7 6 23 23 C 1.39627 * 120.00777 * 359.67618 * 6 5 4 24 24 C 1.37724 * 120.00696 * 0.04118 * 23 6 5 25 25 H 1.07998 * 120.00310 * 359.97438 * 4 3 2 26 26 H 1.08003 * 119.99719 * 180.27309 * 5 4 3 27 27 H 1.09004 * 110.36811 * 274.74665 * 10 9 7 28 28 H 1.09005 * 110.36972 * 37.06795 * 10 9 7 29 29 H 1.08997 * 111.19270 * 279.19379 * 11 10 9 30 30 H 1.09006 * 110.94019 * 155.28851 * 11 10 9 31 31 H 0.96704 * 113.99895 * 185.02569 * 13 12 11 32 32 H 0.96996 * 119.99579 * 180.02562 * 17 16 14 33 33 H 1.09005 * 109.88022 * 300.43870 * 22 9 7 34 34 H 1.08997 * 109.88504 * 61.45056 * 22 9 7 35 35 H 1.07997 * 119.99779 * 180.02562 * 23 6 5 36 36 H 1.07997 * 120.00383 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2665 -0.0563 -1.2083 5 6 4.6437 -0.0498 -1.2082 6 6 5.3418 0.0016 -0.0001 7 6 6.8209 0.0018 -0.0001 8 8 7.4287 -0.3950 0.9747 9 7 7.4947 0.4421 -1.0811 10 6 6.8914 1.0527 -2.2797 11 6 8.0241 1.9154 -2.8953 12 6 9.2678 1.0258 -2.6322 13 8 9.3939 0.0218 -3.6412 14 6 10.5169 1.8652 -2.5542 15 1 10.4691 2.9247 -2.7576 16 6 11.7209 1.2804 -2.2231 17 7 11.7790 -0.0099 -1.9749 18 14 13.2691 2.3210 -2.1257 19 1 12.9378 3.7325 -2.4465 20 1 13.8320 2.2438 -0.7536 21 1 14.2685 1.8138 -3.1000 22 6 8.9525 0.3873 -1.2630 23 6 4.6438 0.0531 1.2081 24 6 3.2665 0.0524 1.2084 25 1 2.7266 -0.1013 -2.1425 26 1 5.1839 -0.0894 -2.1427 27 1 6.5759 0.2802 -2.9810 28 1 6.0456 1.6811 -2.0005 29 1 8.1132 2.8730 -2.3824 30 1 7.8665 2.0602 -3.9642 31 1 10.1100 -0.6082 -3.4819 32 1 12.6260 -0.4211 -1.7416 33 1 9.4465 0.9485 -0.4697 34 1 9.2892 -0.6493 -1.2485 35 1 5.1839 0.0932 2.1425 36 1 2.7267 0.0927 2.1429 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843433.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:42 Heat of formation + Delta-G solvation = -18.415058 kcal Electronic energy + Delta-G solvation = -21782.096282 eV Core-core repulsion = 18424.650309 eV Total energy + Delta-G solvation = -3357.445973 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.34486 -38.80202 -37.31503 -36.52409 -34.50676 -32.29687 -31.86557 -31.38176 -30.06890 -27.94847 -25.86978 -24.43993 -22.96432 -22.53323 -19.90427 -19.43136 -19.15024 -17.33335 -17.04810 -15.99839 -15.59801 -15.05042 -14.89969 -14.80725 -14.37962 -14.24620 -13.89170 -13.75507 -13.32865 -13.11681 -13.00376 -12.89552 -12.47425 -12.43786 -12.10829 -11.71383 -11.50417 -11.32054 -11.08969 -10.86492 -10.70382 -10.51427 -10.26149 -9.63805 -9.41463 -9.29482 -9.14509 -8.74346 -8.40039 -8.03706 -6.34643 -4.43188 0.25391 1.06911 2.37606 2.43956 3.16550 3.21004 3.26150 3.29090 3.39779 3.57445 3.75466 4.22645 4.54562 4.57890 4.65242 4.93776 5.01320 5.13784 5.25547 5.38960 5.57550 5.64311 5.73704 5.79677 5.86499 5.97446 6.03382 6.18162 6.38911 6.46092 6.65637 6.75384 6.83482 7.17391 7.17969 7.28276 7.67010 7.93023 8.03735 8.50335 8.61453 9.21457 9.31260 10.73216 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.036219 B = 0.003673 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.899540 B = 7621.178576 C = 7987.534555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C 0.257 3.743 3 C -0.019 4.019 4 C -0.076 4.076 5 C -0.101 4.101 6 C -0.087 4.087 7 C 0.555 3.445 8 O -0.541 6.541 9 N -0.602 5.602 10 C 0.094 3.906 11 C -0.119 4.119 12 C 0.248 3.752 13 O -0.585 6.585 14 C -0.538 4.538 15 H 0.067 0.933 16 C 0.071 3.929 17 N -0.894 5.894 18 Si 0.903 3.097 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.281 1.281 22 C 0.103 3.897 23 C -0.068 4.068 24 C -0.078 4.078 25 H 0.138 0.862 26 H 0.153 0.847 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.383 0.617 32 H 0.270 0.730 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.145 0.855 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.433 0.665 1.399 12.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.094 5.094 2 C -0.058 4.058 3 C -0.022 4.022 4 C -0.097 4.097 5 C -0.119 4.119 6 C -0.091 4.091 7 C 0.343 3.657 8 O -0.420 6.420 9 N -0.334 5.334 10 C -0.029 4.029 11 C -0.157 4.157 12 C 0.207 3.793 13 O -0.393 6.393 14 C -0.576 4.576 15 H 0.086 0.914 16 C -0.133 4.133 17 N -0.532 5.532 18 Si 0.731 3.269 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.207 1.207 22 C -0.018 4.018 23 C -0.087 4.087 24 C -0.099 4.099 25 H 0.156 0.844 26 H 0.170 0.830 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.233 0.767 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.162 0.838 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.262 0.609 1.764 14.384 hybrid contribution 1.815 0.106 0.362 1.854 sum -12.447 0.715 2.126 12.647 Atomic orbital electron populations 1.81257 1.12068 1.08762 1.07361 1.25731 0.92654 0.93688 0.93711 1.16135 0.84236 1.06650 0.95204 1.21134 0.93969 0.97800 0.96787 1.21920 0.93798 0.97230 0.98957 1.20387 0.94055 1.00398 0.94213 1.17903 0.86260 0.79059 0.82465 1.90776 1.69546 1.48558 1.33113 1.48738 1.10255 1.58233 1.16147 1.22706 0.97059 0.96212 0.86911 1.22834 0.94120 0.97977 1.00748 1.19510 0.91986 0.85181 0.82596 1.86107 1.58075 1.44966 1.50197 1.21524 0.92178 0.95468 1.48420 0.91433 1.25076 0.99542 0.95240 0.93424 1.69697 1.27102 1.09973 1.46468 0.86348 0.82316 0.80435 0.77823 1.19575 1.20758 1.20736 1.23098 0.75356 1.02058 1.01300 1.21208 0.93092 0.96138 0.98239 1.21112 0.93901 0.98076 0.96779 0.84420 0.82997 0.91112 0.91239 0.90258 0.90319 0.76696 0.92005 0.91153 0.91352 0.83754 0.84462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.21 18.54 41.84 0.78 -4.43 16 2 C 0.26 2.65 15.32 -22.47 -0.34 2.30 16 3 C -0.02 -0.17 5.73 -106.90 -0.61 -0.78 16 4 C -0.08 -0.66 9.73 -39.23 -0.38 -1.04 16 5 C -0.10 -1.07 8.05 -39.25 -0.32 -1.38 16 6 C -0.09 -1.14 5.68 -104.90 -0.60 -1.74 16 7 C 0.56 9.97 7.64 -12.30 -0.09 9.88 16 8 O -0.54 -11.67 16.93 5.33 0.09 -11.58 16 9 N -0.60 -11.14 3.32 -171.47 -0.57 -11.71 16 10 C 0.09 1.42 4.98 -2.41 -0.01 1.41 16 11 C -0.12 -2.13 6.24 -24.46 -0.15 -2.29 16 12 C 0.25 5.55 0.85 -89.94 -0.08 5.48 16 13 O -0.58 -13.63 13.08 -35.23 -0.46 -14.09 16 14 C -0.54 -13.35 8.12 -34.44 -0.28 -13.63 16 15 H 0.07 1.66 7.78 -52.49 -0.41 1.25 16 16 C 0.07 1.77 5.28 -17.82 -0.09 1.68 16 17 N -0.89 -22.85 10.98 55.43 0.61 -22.24 16 18 Si 0.90 19.79 29.54 -169.99 -5.02 14.77 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 C 0.10 2.32 5.24 -3.06 -0.02 2.30 16 23 C -0.07 -0.75 9.57 -39.25 -0.38 -1.13 16 24 C -0.08 -0.69 9.73 -39.23 -0.38 -1.07 16 25 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 26 H 0.15 1.54 4.57 -52.48 -0.24 1.30 16 27 H 0.07 0.99 6.84 -51.93 -0.35 0.63 16 28 H 0.07 0.85 6.81 -51.93 -0.35 0.49 16 29 H 0.08 1.38 8.04 -51.93 -0.42 0.97 16 30 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.38 9.22 7.47 45.56 0.34 9.56 16 32 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 33 H 0.07 1.75 7.81 -51.93 -0.41 1.35 16 34 H 0.07 1.68 7.93 -51.93 -0.41 1.27 16 35 H 0.14 1.58 7.83 -52.49 -0.41 1.17 16 36 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 313.52 15.07 4.72 4.72 Total: -1.00 -28.86 313.52 -6.65 -35.51 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -3.07 Total: 9.07 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -3.73 Total: -0.03 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.81 Total: -38.38 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.37 Total: -25.67 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.86 -6.65 -35.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843433.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.097 kcal (2) G-P(sol) polarization free energy of solvation -28.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds