Wall clock time and date at job start Tue Mar 31 2020 05:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39675 * 120.00121 * 87.28526 * 3 2 1 5 5 C 1.37728 * 119.98890 * 179.71397 * 4 3 2 6 6 C 1.39630 * 120.00828 * 0.58220 * 5 4 3 7 7 C 1.47905 * 119.99683 * 179.69478 * 6 5 4 8 8 O 1.21539 * 120.00188 * 204.58461 * 7 6 5 9 9 N 1.34777 * 119.99942 * 24.58562 * 7 6 5 10 10 C 1.47421 * 125.64994 * 5.43720 * 9 7 6 11 11 C 1.55129 * 104.72475 * 155.81670 * 10 9 7 12 12 C 1.55157 * 101.48484 * 37.29688 * 11 10 9 13 13 O 1.42900 * 110.72091 * 82.69755 * 12 11 10 14 14 C 1.50700 * 110.71900 * 205.96964 * 12 11 10 15 15 H 1.07993 * 120.00211 * 354.97462 * 14 12 11 16 16 C 1.37882 * 119.99822 * 174.97851 * 14 12 11 17 17 N 1.31518 * 119.99968 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 119.99926 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47123 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47300 * 119.99467 * 18 16 14 21 21 H 1.48500 * 109.46934 * 239.99670 * 18 16 14 22 22 C 1.47021 * 125.64801 * 185.74698 * 9 7 6 23 23 C 1.39627 * 120.00777 * 359.67618 * 6 5 4 24 24 C 1.37724 * 120.00696 * 0.04118 * 23 6 5 25 25 H 1.07998 * 120.00310 * 359.97438 * 4 3 2 26 26 H 1.08003 * 119.99719 * 180.27309 * 5 4 3 27 27 H 1.09004 * 110.36811 * 274.74665 * 10 9 7 28 28 H 1.09005 * 110.36972 * 37.06795 * 10 9 7 29 29 H 1.08997 * 111.19270 * 279.19379 * 11 10 9 30 30 H 1.09006 * 110.94019 * 155.28851 * 11 10 9 31 31 H 0.96704 * 113.99895 * 185.02569 * 13 12 11 32 32 H 0.96996 * 119.99579 * 180.02562 * 17 16 14 33 33 H 1.09005 * 109.88022 * 300.43870 * 22 9 7 34 34 H 1.08997 * 109.88504 * 61.45056 * 22 9 7 35 35 H 1.07997 * 119.99779 * 180.02562 * 23 6 5 36 36 H 1.07997 * 120.00383 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2665 -0.0563 -1.2083 5 6 4.6437 -0.0498 -1.2082 6 6 5.3418 0.0016 -0.0001 7 6 6.8209 0.0018 -0.0001 8 8 7.4287 -0.3950 0.9747 9 7 7.4947 0.4421 -1.0811 10 6 6.8914 1.0527 -2.2797 11 6 8.0241 1.9154 -2.8953 12 6 9.2678 1.0258 -2.6322 13 8 9.3939 0.0218 -3.6412 14 6 10.5169 1.8652 -2.5542 15 1 10.4691 2.9247 -2.7576 16 6 11.7209 1.2804 -2.2231 17 7 11.7790 -0.0099 -1.9749 18 14 13.2691 2.3210 -2.1257 19 1 12.9378 3.7325 -2.4465 20 1 13.8320 2.2438 -0.7536 21 1 14.2685 1.8138 -3.1000 22 6 8.9525 0.3873 -1.2630 23 6 4.6438 0.0531 1.2081 24 6 3.2665 0.0524 1.2084 25 1 2.7266 -0.1013 -2.1425 26 1 5.1839 -0.0894 -2.1427 27 1 6.5759 0.2802 -2.9810 28 1 6.0456 1.6811 -2.0005 29 1 8.1132 2.8730 -2.3824 30 1 7.8665 2.0602 -3.9642 31 1 10.1100 -0.6082 -3.4819 32 1 12.6260 -0.4211 -1.7416 33 1 9.4465 0.9485 -0.4697 34 1 9.2892 -0.6493 -1.2485 35 1 5.1839 0.0932 2.1425 36 1 2.7267 0.0927 2.1429 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843433.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:41 Heat of formation + Delta-G solvation = -37.656877 kcal Electronic energy + Delta-G solvation = -21782.930670 eV Core-core repulsion = 18424.650309 eV Total energy + Delta-G solvation = -3358.280361 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.54016 -39.95449 -38.83746 -37.45186 -36.15251 -34.21431 -32.91308 -32.18903 -31.52529 -29.54857 -27.42530 -25.77361 -24.04699 -23.60878 -21.47076 -20.80730 -20.00188 -19.09704 -18.37865 -17.40889 -16.99821 -16.61524 -16.26064 -15.91723 -15.62426 -15.12366 -14.98658 -14.80436 -14.77166 -14.58216 -14.43216 -13.88184 -13.77708 -13.57517 -13.42232 -13.20689 -13.01975 -12.85640 -12.52119 -12.32648 -12.23815 -12.06016 -11.95297 -11.12845 -11.08517 -10.63788 -10.25809 -10.08630 -10.04406 -9.56547 -8.25598 -6.40505 -0.62480 0.31828 1.40610 1.43568 1.44963 1.54565 1.57197 2.00099 2.15132 2.39293 2.74420 2.85872 3.01792 3.45616 3.76912 3.84572 3.89114 4.11446 4.20663 4.24890 4.36287 4.40064 4.60511 4.67027 4.72768 4.97926 5.05218 5.05308 5.15053 5.18984 5.24685 5.33787 5.40979 5.54288 5.67960 5.76450 6.08304 6.38699 6.59725 6.68513 7.08894 7.29523 7.36926 8.80375 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.036219 B = 0.003673 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.899540 B = 7621.178576 C = 7987.534555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.282 3.718 3 C -0.010 4.010 4 C -0.059 4.059 5 C -0.096 4.096 6 C -0.105 4.105 7 C 0.551 3.449 8 O -0.591 6.591 9 N -0.607 5.607 10 C 0.099 3.901 11 C -0.115 4.115 12 C 0.233 3.767 13 O -0.585 6.585 14 C -0.556 4.556 15 H 0.066 0.934 16 C 0.026 3.974 17 N -0.915 5.915 18 Si 0.960 3.040 19 H -0.265 1.265 20 H -0.285 1.285 21 H -0.279 1.279 22 C 0.121 3.879 23 C -0.072 4.072 24 C -0.062 4.062 25 H 0.169 0.831 26 H 0.160 0.840 27 H 0.091 0.909 28 H 0.110 0.890 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.375 0.625 32 H 0.269 0.731 33 H 0.033 0.967 34 H 0.035 0.965 35 H 0.138 0.862 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.922 1.536 0.562 15.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.033 4.033 3 C -0.014 4.014 4 C -0.079 4.079 5 C -0.114 4.114 6 C -0.109 4.109 7 C 0.342 3.658 8 O -0.473 6.473 9 N -0.338 5.338 10 C -0.022 4.022 11 C -0.153 4.153 12 C 0.192 3.808 13 O -0.392 6.392 14 C -0.594 4.594 15 H 0.084 0.916 16 C -0.175 4.175 17 N -0.554 5.554 18 Si 0.785 3.215 19 H -0.189 1.189 20 H -0.212 1.212 21 H -0.204 1.204 22 C -0.002 4.002 23 C -0.091 4.091 24 C -0.083 4.083 25 H 0.187 0.813 26 H 0.177 0.823 27 H 0.108 0.892 28 H 0.128 0.872 29 H 0.100 0.900 30 H 0.112 0.888 31 H 0.224 0.776 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.156 0.844 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -16.788 1.501 0.901 16.879 hybrid contribution 2.539 -0.182 0.656 2.628 sum -14.250 1.319 1.557 14.395 Atomic orbital electron populations 1.81307 1.13189 1.09975 1.08531 1.25676 0.92446 0.92577 0.92597 1.16180 0.83580 1.06055 0.95574 1.21371 0.92995 0.95658 0.97869 1.21911 0.94499 0.96999 0.97962 1.20061 0.90685 1.03836 0.96316 1.18731 0.88373 0.77488 0.81240 1.90737 1.71150 1.50549 1.34868 1.48757 1.08625 1.58787 1.17666 1.22929 0.96882 0.96708 0.85684 1.22840 0.92711 0.97609 1.02135 1.19705 0.93372 0.85364 0.82311 1.86094 1.57636 1.44984 1.50527 1.21880 0.93504 0.95780 1.48210 0.91563 1.25779 1.02178 0.96194 0.93336 1.69801 1.27460 1.11071 1.47067 0.85476 0.79235 0.79349 0.77397 1.18911 1.21151 1.20428 1.22542 0.78092 0.99203 1.00392 1.21195 0.94001 0.96541 0.97382 1.21271 0.92731 0.96283 0.97976 0.81319 0.82289 0.89151 0.87210 0.89974 0.88754 0.77599 0.92167 0.94894 0.94704 0.84369 0.81879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.01 18.54 19.01 0.35 -9.66 16 2 C 0.28 4.75 15.32 88.33 1.35 6.11 16 3 C -0.01 -0.14 5.73 -21.34 -0.12 -0.27 16 4 C -0.06 -0.74 9.73 22.50 0.22 -0.52 16 5 C -0.10 -1.68 8.05 22.49 0.18 -1.50 16 6 C -0.11 -2.59 5.68 -20.04 -0.11 -2.71 16 7 C 0.55 19.98 7.64 86.80 0.66 20.64 16 8 O -0.59 -26.67 16.93 -3.84 -0.06 -26.73 16 9 N -0.61 -22.52 3.32 -814.68 -2.71 -25.23 16 10 C 0.10 2.76 4.98 86.93 0.43 3.19 16 11 C -0.12 -3.95 6.24 32.06 0.20 -3.75 16 12 C 0.23 10.57 0.85 -10.35 -0.01 10.57 16 13 O -0.58 -27.58 13.08 -148.98 -1.95 -29.53 16 14 C -0.56 -28.06 8.12 25.60 0.21 -27.85 16 15 H 0.07 3.27 7.78 -2.91 -0.02 3.25 16 16 C 0.03 1.33 5.28 84.66 0.45 1.78 16 17 N -0.91 -48.50 10.98 21.45 0.24 -48.26 16 18 Si 0.96 41.19 29.54 68.60 2.03 43.22 16 19 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 20 H -0.29 -12.33 7.11 99.48 0.71 -11.63 16 21 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 22 C 0.12 5.68 5.24 86.73 0.45 6.13 16 23 C -0.07 -1.47 9.57 22.48 0.22 -1.25 16 24 C -0.06 -0.89 9.73 22.49 0.22 -0.67 16 25 H 0.17 1.18 8.06 -2.91 -0.02 1.15 16 26 H 0.16 2.58 4.57 -2.91 -0.01 2.56 16 27 H 0.09 2.21 6.84 -2.38 -0.02 2.19 16 28 H 0.11 2.22 6.81 -2.38 -0.02 2.21 16 29 H 0.08 2.75 8.04 -2.39 -0.02 2.73 16 30 H 0.09 2.94 8.14 -2.38 -0.02 2.92 16 31 H 0.37 18.72 7.47 -74.05 -0.55 18.16 16 32 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 33 H 0.03 1.75 7.81 -2.38 -0.02 1.73 16 34 H 0.03 1.83 7.93 -2.39 -0.02 1.81 16 35 H 0.14 2.97 7.83 -2.91 -0.02 2.94 16 36 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -66.02 313.52 2.82 -63.20 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.58 Total: 23.10 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 4.35 Total: 9.89 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -2.12 Total: -83.15 kcal Atomic # 8 Polarization: -54.25 SS G_CDS: -2.01 Total: -56.26 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -66.02 2.82 -63.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843433.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.545 kcal (2) G-P(sol) polarization free energy of solvation -66.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds