Wall clock time and date at job start Tue Mar 31 2020 05:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36610 * 127.11738 * 2 1 4 4 C 1.50696 * 126.36079 * 359.97438 * 3 2 1 5 5 Cl 1.80298 * 109.47078 * 270.30675 * 4 3 2 6 6 N 1.30329 * 107.27745 * 180.26545 * 3 2 1 7 7 N 1.28536 * 109.99680 * 359.73850 * 6 3 2 8 8 C 1.31042 * 109.85704 * 0.02562 * 7 6 3 9 9 O 1.35530 * 126.44529 * 180.02562 * 8 7 6 10 10 C 1.42905 * 117.00180 * 0.02562 * 9 8 7 11 11 C 1.53935 * 113.73498 * 248.76775 * 10 9 8 12 12 N 1.48186 * 86.10168 * 221.95978 * 11 10 9 13 13 C 1.46895 * 111.07427 * 137.52231 * 12 11 10 14 14 C 1.50708 * 109.46908 * 70.56351 * 13 12 11 15 15 H 1.07996 * 119.99785 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99722 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99789 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00031 * 0.02562 * 16 14 13 19 19 H 1.48492 * 109.47081 * 89.99879 * 18 16 14 20 20 H 1.48497 * 109.47003 * 210.00173 * 18 16 14 21 21 H 1.48502 * 109.47077 * 329.99929 * 18 16 14 22 22 C 1.47960 * 90.79916 * 24.59913 * 12 11 10 23 23 H 1.08996 * 109.46764 * 270.17358 * 1 2 3 24 24 H 1.09004 * 109.47386 * 30.16890 * 1 2 3 25 25 H 1.08997 * 109.46988 * 150.17139 * 1 2 3 26 26 H 1.08999 * 109.47274 * 30.30897 * 4 3 2 27 27 H 1.09002 * 109.47312 * 150.31137 * 4 3 2 28 28 H 1.08998 * 112.93595 * 20.33802 * 10 9 8 29 29 H 1.09000 * 113.76137 * 336.24113 * 11 10 9 30 30 H 1.08998 * 113.75757 * 107.60309 * 11 10 9 31 31 H 1.08999 * 109.47345 * 190.56501 * 13 12 11 32 32 H 1.08996 * 109.46906 * 310.56784 * 13 12 11 33 33 H 0.96993 * 119.99940 * 180.02562 * 17 16 14 34 34 H 1.09001 * 113.75866 * 221.08211 * 22 12 11 35 35 H 1.09001 * 113.75942 * 89.72328 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2894 1.0893 0.0000 4 6 1.8608 2.5341 -0.0005 5 17 1.6818 3.1072 -1.7006 6 7 3.5153 0.6470 -0.0058 7 7 3.5189 -0.6383 -0.0039 8 6 2.2876 -1.0868 0.0027 9 8 1.9042 -2.3868 0.0070 10 6 2.9420 -3.3693 0.0046 11 6 3.0356 -4.1685 -1.3077 12 7 3.2402 -5.3592 -0.4497 13 6 2.4698 -6.5070 -0.9465 14 6 3.0808 -7.0037 -2.2316 15 1 3.9543 -6.5157 -2.6381 16 6 2.5246 -8.0811 -2.8881 17 7 3.0580 -8.5148 -4.0092 18 14 1.0134 -8.9246 -2.1852 19 1 -0.2100 -8.2799 -2.7263 20 1 1.0260 -10.3600 -2.5652 21 1 1.0229 -8.8043 -0.7051 22 6 2.5401 -4.6965 0.6727 23 1 -0.3633 0.0031 1.0276 24 1 -0.3634 0.8885 -0.5165 25 1 -0.3633 -0.8915 -0.5112 26 1 0.9068 2.6303 0.5177 27 1 2.6132 3.1365 0.5086 28 1 3.8990 -2.9771 0.3487 29 1 2.1054 -4.1910 -1.8755 30 1 3.9014 -3.9113 -1.9177 31 1 2.4867 -7.3048 -0.2040 32 1 1.4395 -6.2017 -1.1284 33 1 2.6666 -9.2724 -4.4713 34 1 3.0108 -4.8605 1.6421 35 1 1.4646 -4.8738 0.6855 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230668272.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:44 Heat of formation + Delta-G solvation = 59.653463 kcal Electronic energy + Delta-G solvation = -20035.207351 eV Core-core repulsion = 16711.006584 eV Total energy + Delta-G solvation = -3324.200766 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.20266 -41.29419 -38.71032 -37.19742 -36.15220 -34.96723 -32.71870 -31.64913 -28.75443 -28.13430 -27.57454 -27.06747 -24.16854 -22.68709 -22.28454 -20.82958 -19.60654 -19.05329 -18.11709 -17.82429 -17.02702 -16.48066 -16.16492 -16.14261 -15.66416 -15.09533 -14.86438 -14.70571 -14.59970 -14.10009 -14.00189 -13.90484 -13.71243 -13.53808 -12.93911 -12.79855 -12.67261 -11.86495 -11.82814 -11.81836 -11.69274 -11.59216 -11.45202 -11.33080 -11.26261 -10.84936 -9.88538 -9.78907 -8.33078 -6.39190 0.27868 0.58182 1.22504 1.32624 1.35634 1.46508 1.85205 2.19033 2.31299 2.93728 2.96451 3.01823 3.25988 3.50270 3.59822 3.82429 3.92461 4.13387 4.29302 4.31888 4.34141 4.50150 4.52562 4.59379 4.63329 4.70678 4.74761 4.78738 4.91221 5.31016 5.36443 5.63073 5.85629 6.07188 6.41282 6.67089 7.24738 7.45543 8.83871 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.029485 B = 0.003187 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.421814 B = 8784.307428 C = 8914.960108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.463 5.463 3 C 0.160 3.840 4 C 0.063 3.937 5 Cl -0.171 7.171 6 N -0.286 5.286 7 N -0.363 5.363 8 C 0.369 3.631 9 O -0.281 6.281 10 C 0.086 3.914 11 C 0.006 3.994 12 N -0.484 5.484 13 C 0.143 3.857 14 C -0.527 4.527 15 H 0.031 0.969 16 C 0.007 3.993 17 N -0.947 5.947 18 Si 0.953 3.047 19 H -0.265 1.265 20 H -0.281 1.281 21 H -0.244 1.244 22 C 0.013 3.987 23 H 0.110 0.890 24 H 0.120 0.880 25 H 0.092 0.908 26 H 0.157 0.843 27 H 0.151 0.849 28 H 0.121 0.879 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.040 0.960 32 H 0.004 0.996 33 H 0.268 0.732 34 H 0.122 0.878 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.561 23.603 13.377 29.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.165 5.165 3 C -0.107 4.107 4 C -0.001 4.001 5 Cl -0.145 7.145 6 N -0.128 5.128 7 N -0.218 5.218 8 C 0.064 3.936 9 O -0.183 6.183 10 C 0.029 3.971 11 C -0.123 4.123 12 N -0.208 5.208 13 C 0.015 3.985 14 C -0.566 4.566 15 H 0.050 0.950 16 C -0.191 4.191 17 N -0.588 5.588 18 Si 0.775 3.225 19 H -0.190 1.190 20 H -0.206 1.206 21 H -0.167 1.167 22 C -0.115 4.115 23 H 0.129 0.871 24 H 0.138 0.862 25 H 0.111 0.889 26 H 0.175 0.825 27 H 0.169 0.831 28 H 0.139 0.861 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.022 0.978 33 H 0.077 0.923 34 H 0.140 0.860 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.753 22.996 13.202 28.253 hybrid contribution -2.180 -0.800 -0.823 2.463 sum -11.932 22.197 12.380 28.077 Atomic orbital electron populations 1.22574 0.71797 1.06889 1.06418 1.45925 1.10402 1.03389 1.56788 1.24859 0.86412 0.92030 1.07419 1.22786 1.08444 0.84073 0.84826 1.98780 1.98430 1.89577 1.27721 1.73921 1.19032 1.02240 1.17579 1.74593 1.15965 1.04288 1.27002 1.22345 0.86796 0.84442 1.00055 1.86018 1.35913 1.08011 1.88333 1.24757 0.90849 0.84272 0.97238 1.24269 1.01571 0.90392 0.96058 1.68487 1.44496 1.02724 1.05116 1.20471 0.91773 0.91209 0.95023 1.21193 1.13516 1.15045 1.06808 0.95014 1.25946 1.00897 0.97337 0.94880 1.70059 1.43044 1.27181 1.18475 0.85635 0.78775 0.77722 0.80362 1.18988 1.20645 1.16686 1.24419 1.00141 0.88838 0.98122 0.87132 0.86205 0.88901 0.82544 0.83138 0.86086 0.91269 0.90469 0.94196 0.97841 0.92266 0.85997 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.60 10.94 127.77 1.40 1.99 16 2 N -0.46 -9.17 3.20 -652.25 -2.09 -11.26 16 3 C 0.16 3.15 7.44 137.67 1.02 4.18 16 4 C 0.06 0.58 6.86 71.23 0.49 1.07 16 5 Cl -0.17 -2.51 29.13 -2.72 -0.08 -2.59 16 6 N -0.29 -8.27 12.18 -49.60 -0.60 -8.88 16 7 N -0.36 -11.88 11.13 -173.68 -1.93 -13.81 16 8 C 0.37 10.42 8.63 179.70 1.55 11.97 16 9 O -0.28 -8.14 10.20 -88.34 -0.90 -9.04 16 10 C 0.09 2.70 4.43 31.24 0.14 2.84 16 11 C 0.01 0.24 7.32 86.37 0.63 0.88 16 12 N -0.48 -20.05 6.25 -915.69 -5.72 -25.77 16 13 C 0.14 6.74 3.65 85.56 0.31 7.05 16 14 C -0.53 -30.87 9.40 25.60 0.24 -30.63 16 15 H 0.03 2.10 8.04 -2.91 -0.02 2.07 16 16 C 0.01 0.41 5.47 84.66 0.46 0.87 16 17 N -0.95 -59.72 13.96 21.45 0.30 -59.42 16 18 Si 0.95 43.22 27.47 68.60 1.88 45.10 16 19 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.24 -10.08 6.54 99.48 0.65 -9.43 16 22 C 0.01 0.40 7.81 86.41 0.67 1.08 16 23 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 24 H 0.12 0.49 7.90 -2.38 -0.02 0.47 16 25 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.16 0.13 7.94 -2.39 -0.02 0.11 16 27 H 0.15 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.12 3.88 7.28 -2.39 -0.02 3.86 16 29 H 0.07 2.80 7.79 -2.39 -0.02 2.78 16 30 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 31 H 0.04 1.85 7.20 -2.39 -0.02 1.83 16 32 H 0.00 0.17 7.12 -2.39 -0.02 0.16 16 33 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 34 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 35 H 0.09 2.47 7.79 -2.39 -0.02 2.45 16 Total: -1.00 -77.89 316.31 -1.18 -79.06 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: 1.05 Total: 5.30 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 6.92 Total: 1.30 kcal Atomic # 7 Polarization: -109.08 SS G_CDS: -10.05 Total: -119.13 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -0.90 Total: -9.04 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.88 Total: 45.10 kcal Atomic # 17 Polarization: -2.51 SS G_CDS: -0.08 Total: -2.59 kcal Total: -77.89 -1.18 -79.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230668272.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.718 kcal (2) G-P(sol) polarization free energy of solvation -77.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds