Wall clock time and date at job start Tue Mar 31 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00209 * 2 1 4 4 H 1.48496 * 109.47031 * 239.99756 * 3 2 1 5 5 H 1.48504 * 109.46971 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47038 * 119.99733 * 3 2 1 7 7 C 1.37880 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00289 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99951 * 0.02562 * 7 2 1 10 10 C 1.52991 * 109.46959 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47288 * 180.02562 * 10 9 7 12 12 C 1.34773 * 120.00432 * 179.97438 * 11 10 9 13 13 O 1.21353 * 120.00047 * 0.02562 * 12 11 10 14 14 C 1.49454 * 120.00135 * 179.72278 * 12 11 10 15 15 O 1.21343 * 119.99752 * 0.28157 * 14 12 11 16 16 N 1.34777 * 120.00164 * 180.27489 * 14 12 11 17 17 C 1.46499 * 120.00065 * 180.02562 * 16 14 12 18 18 C 1.52996 * 109.46959 * 180.02562 * 17 16 14 19 19 H 1.09001 * 108.83331 * 56.47012 * 18 17 16 20 20 C 1.52336 * 108.86919 * 174.99930 * 18 17 16 21 21 C 1.54262 * 112.58648 * 120.81817 * 20 18 17 22 22 S 1.83955 * 102.57945 * 24.53081 * 21 20 18 23 23 C 1.54262 * 108.86971 * 298.07995 * 18 17 16 24 24 H 0.97000 * 120.00287 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46546 * 60.00191 * 9 7 2 26 26 H 1.08993 * 109.47345 * 300.00182 * 9 7 2 27 27 H 1.09000 * 109.47648 * 60.00076 * 10 9 7 28 28 H 1.09001 * 109.47172 * 300.00020 * 10 9 7 29 29 H 0.97001 * 119.99454 * 0.02562 * 11 10 9 30 30 H 0.97000 * 119.99555 * 0.02562 * 16 14 12 31 31 H 1.08994 * 109.46952 * 300.00262 * 17 16 14 32 32 H 1.08998 * 109.47023 * 60.00193 * 17 16 14 33 33 H 1.08998 * 108.86801 * 241.64076 * 20 18 17 34 34 H 1.08995 * 108.86585 * 0.02562 * 20 18 17 35 35 H 1.08999 * 110.78731 * 142.80385 * 21 20 18 36 36 H 1.08998 * 110.78375 * 266.25665 * 21 20 18 37 37 H 1.09005 * 110.78354 * 332.91833 * 23 18 17 38 38 H 1.08997 * 110.79072 * 96.38078 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9308 -0.0001 12 6 2.1864 -6.0980 -0.0007 13 8 3.4000 -6.0981 -0.0003 14 6 1.4391 -7.3923 0.0049 15 8 0.2257 -7.3922 0.0049 16 7 2.1130 -8.5595 0.0099 17 6 1.3804 -9.8282 0.0148 18 6 2.3746 -10.9911 0.0205 19 1 3.0358 -10.8846 0.8805 20 6 1.6032 -12.2982 0.1513 21 6 1.8504 -13.2532 -1.0347 22 16 3.4947 -12.7073 -1.6528 23 6 3.2220 -10.9294 -1.2671 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6239 -2.5568 0.8902 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8894 29 1 0.5426 -4.9308 -0.0008 30 1 3.0830 -8.5595 0.0102 31 1 0.7535 -9.8823 0.9048 32 1 0.7541 -9.8896 -0.8751 33 1 1.9054 -12.7952 1.0731 34 1 0.5379 -12.0746 0.2073 35 1 1.8886 -14.2886 -0.6961 36 1 1.0864 -13.1237 -1.8013 37 1 2.6707 -10.4396 -2.0698 38 1 4.1698 -10.4238 -1.0826 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329444607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:13 Heat of formation + Delta-G solvation = -89.929825 kcal Electronic energy + Delta-G solvation = -19594.453376 eV Core-core repulsion = 16369.350242 eV Total energy + Delta-G solvation = -3225.103135 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.53586 -38.63482 -37.55203 -35.28057 -34.13959 -32.86121 -30.39484 -29.83794 -27.72117 -25.75269 -24.52472 -22.87588 -21.08242 -20.77818 -20.02057 -18.39137 -17.13028 -16.77600 -16.58482 -16.21604 -15.89612 -15.34866 -14.94576 -14.76778 -14.49092 -14.23059 -14.00765 -13.47652 -13.36572 -13.02370 -12.68305 -12.38246 -12.33625 -12.15777 -11.91305 -11.55264 -11.26434 -11.15205 -11.06350 -10.70164 -10.41363 -10.33585 -9.83121 -9.48669 -9.47036 -9.24048 -8.73049 -8.43477 -8.15404 -6.11686 -4.15585 1.41302 1.55166 1.83419 2.45152 3.29503 3.33775 3.36406 3.37231 3.79096 3.88162 4.02091 4.35095 4.39044 4.45668 4.62290 4.72562 4.76169 4.95211 5.11543 5.19544 5.22411 5.25093 5.27394 5.47542 5.59892 5.99463 6.15012 6.20964 6.55808 6.66128 6.95283 7.43179 7.55471 7.60605 7.85128 7.86578 8.18107 8.30340 8.89772 9.49354 10.99733 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.050590 B = 0.002335 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.334017 B =11990.044210 C =12343.269109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.118 3.882 11 N -0.685 5.685 12 C 0.497 3.503 13 O -0.534 6.534 14 C 0.509 3.491 15 O -0.519 6.519 16 N -0.708 5.708 17 C 0.124 3.876 18 C -0.105 4.105 19 H 0.095 0.905 20 C -0.120 4.120 21 C -0.066 4.066 22 S -0.299 6.299 23 C -0.066 4.066 24 H 0.263 0.737 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.411 0.589 30 H 0.413 0.587 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.470 -25.897 -0.102 26.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.003 4.003 11 N -0.336 5.336 12 C 0.276 3.724 13 O -0.412 6.412 14 C 0.290 3.710 15 O -0.394 6.394 16 N -0.363 5.363 17 C -0.001 4.001 18 C -0.125 4.125 19 H 0.113 0.887 20 C -0.160 4.160 21 C -0.214 4.214 22 S -0.072 6.072 23 C -0.214 4.214 24 H 0.073 0.927 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.246 0.754 30 H 0.249 0.751 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.124 0.876 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.241 -26.363 -0.604 26.568 hybrid contribution -0.531 1.523 0.458 1.676 sum 2.710 -24.840 -0.147 24.988 Atomic orbital electron populations 1.69947 1.06098 1.27095 1.49929 1.25005 0.94910 0.99454 0.94905 0.86548 0.79492 0.82574 0.78771 1.20088 1.21225 1.20095 1.20972 0.93185 0.90241 1.51913 0.92209 1.19352 0.94182 0.90856 0.98246 1.21945 0.96283 0.80720 1.01363 1.46240 1.11805 1.05804 1.69743 1.19953 0.87716 0.85240 0.79488 1.90734 1.13199 1.87524 1.49710 1.20476 0.87727 0.85573 0.77265 1.90763 1.13451 1.87671 1.47469 1.45755 1.11453 1.04869 1.74180 1.21693 0.94038 0.81019 1.03353 1.21997 0.96952 0.94759 0.98814 0.88695 1.21967 1.01667 0.93370 0.98956 1.24163 0.95197 1.02558 0.99521 1.88161 1.25037 1.09003 1.85011 1.24342 1.03584 0.94200 0.99241 0.92695 0.95667 0.95658 0.91825 0.91832 0.75374 0.75087 0.90387 0.90567 0.89892 0.89848 0.87553 0.89034 0.88613 0.87262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16 10 C 0.12 2.43 5.61 -4.05 -0.02 2.41 16 11 N -0.69 -12.18 5.55 -60.73 -0.34 -12.51 16 12 C 0.50 8.22 7.89 -11.59 -0.09 8.13 16 13 O -0.53 -9.72 16.48 5.49 0.09 -9.63 16 14 C 0.51 7.12 7.89 -11.58 -0.09 7.03 16 15 O -0.52 -8.31 16.48 5.50 0.09 -8.22 16 16 N -0.71 -7.13 5.30 -60.74 -0.32 -7.45 16 17 C 0.12 0.93 4.53 -4.04 -0.02 0.91 16 18 C -0.10 -0.59 2.72 -90.30 -0.25 -0.83 16 19 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 20 C -0.12 -0.54 5.98 -26.41 -0.16 -0.70 16 21 C -0.07 -0.35 7.46 37.82 0.28 -0.06 16 22 S -0.30 -2.44 23.27 -107.50 -2.50 -4.94 16 23 C -0.07 -0.44 6.28 37.82 0.24 -0.20 16 24 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.41 6.96 7.94 -40.82 -0.32 6.64 16 30 H 0.41 3.73 7.58 -40.82 -0.31 3.42 16 31 H 0.08 0.60 8.13 -51.93 -0.42 0.17 16 32 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.32 7.51 -51.93 -0.39 -0.07 16 35 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.10 0.67 7.82 -51.93 -0.41 0.27 16 38 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 335.66 15.07 5.06 5.06 Total: -1.00 -31.59 335.66 -8.48 -40.07 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -5.62 Total: 2.99 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -0.66 Total: 3.74 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.08 Total: -45.19 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: 0.18 Total: -17.85 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -2.44 SS G_CDS: -2.50 Total: -4.94 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.59 -8.48 -40.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329444607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.859 kcal (2) G-P(sol) polarization free energy of solvation -31.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds