Wall clock time and date at job start Tue Mar 31 2020 06:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.50703 * 109.47171 * 180.02562 * 3 2 1 5 5 N 1.29940 * 126.28912 * 90.02493 * 4 3 2 6 6 O 1.21305 * 110.25415 * 179.97438 * 5 4 3 7 7 C 1.33640 * 109.80822 * 359.97438 * 6 5 4 8 8 C 1.50698 * 126.54873 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.46914 * 165.02863 * 8 7 6 10 10 C 1.52998 * 109.47270 * 285.02713 * 8 7 6 11 11 S 1.81399 * 109.47132 * 45.03082 * 8 7 6 12 12 C 1.81403 * 103.00062 * 174.99698 * 11 8 7 13 13 C 1.52998 * 109.46954 * 180.02562 * 12 11 8 14 14 C 1.53004 * 109.46900 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.46996 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00178 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99850 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00030 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00087 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47255 * 90.00242 * 19 17 15 21 21 H 1.48503 * 109.47491 * 210.00472 * 19 17 15 22 22 H 1.48500 * 109.47223 * 330.00440 * 19 17 15 23 23 N 1.31131 * 106.89864 * 359.77574 * 7 6 5 24 24 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 25 25 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 27 27 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 28 28 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 29 29 H 1.09000 * 109.47697 * 300.00486 * 10 8 7 30 30 H 1.09002 * 109.47030 * 60.00221 * 10 8 7 31 31 H 1.08998 * 109.47116 * 179.97438 * 10 8 7 32 32 H 1.09005 * 109.46866 * 300.00336 * 12 11 8 33 33 H 1.09002 * 109.47115 * 59.99925 * 12 11 8 34 34 H 1.08995 * 109.47227 * 300.00285 * 13 12 11 35 35 H 1.08997 * 109.47206 * 60.00467 * 13 12 11 36 36 H 1.08995 * 109.47527 * 300.00240 * 14 13 12 37 37 H 1.09002 * 109.47029 * 60.00010 * 14 13 12 38 38 H 0.96997 * 120.00215 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.2789 1.1263 -1.0483 6 8 5.4412 1.0345 -0.7137 7 6 5.5295 1.0277 0.6197 8 6 6.7929 0.9274 1.4350 9 1 6.5831 1.2106 2.4665 10 6 7.3119 -0.5113 1.3966 11 16 8.0475 2.0415 0.7454 12 6 9.4148 1.8988 1.9290 13 6 10.5718 2.7945 1.4820 14 6 11.7248 2.6747 2.4806 15 6 12.8641 3.5575 2.0407 16 1 12.7747 4.1455 1.1393 17 6 14.0208 3.6144 2.7891 18 7 15.0149 4.3851 2.4054 19 14 14.1752 2.5978 4.3486 20 1 14.7494 1.2687 4.0183 21 1 15.0660 3.2971 5.3092 22 1 12.8329 2.4194 4.9581 23 7 4.3070 1.1292 1.0832 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 1.6887 1.8463 0.8900 29 1 6.5581 -1.1808 1.8109 30 1 7.5217 -0.7945 0.3651 31 1 8.2260 -0.5837 1.9859 32 1 9.0746 2.2109 2.9165 33 1 9.7520 0.8631 1.9715 34 1 10.9120 2.4829 0.4945 35 1 10.2343 3.8301 1.4400 36 1 11.3843 2.9866 3.4679 37 1 12.0624 1.6392 2.5232 38 1 15.8285 4.4255 2.9321 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182134074.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:22 Heat of formation + Delta-G solvation = 12.807468 kcal Electronic energy + Delta-G solvation = -19293.073740 eV Core-core repulsion = 16072.425629 eV Total energy + Delta-G solvation = -3220.648111 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.92200 -38.52630 -36.24437 -35.02301 -34.67803 -32.17056 -31.59302 -29.05294 -28.09963 -26.41991 -25.34314 -23.75600 -23.30700 -21.62110 -20.26198 -18.50506 -18.00053 -16.90512 -16.84668 -16.47426 -16.08789 -15.92010 -15.72258 -14.90421 -14.53031 -14.01909 -13.74942 -13.36250 -13.14332 -12.78879 -12.71201 -12.39540 -12.34753 -12.22141 -12.08770 -11.93616 -11.71490 -11.39237 -11.23039 -10.90896 -10.43392 -10.33424 -10.05548 -9.92527 -9.79391 -9.65712 -9.25885 -8.58050 -7.75637 -6.07722 -4.06698 0.66098 1.35039 1.82047 2.31776 2.52599 2.98435 3.27337 3.35254 3.36944 3.52430 3.82342 4.34789 4.41010 4.42131 4.58328 4.79192 4.83120 4.84317 4.97922 5.17016 5.18254 5.23935 5.28062 5.32556 5.35665 5.39467 5.59064 5.74174 5.90292 6.32595 6.41737 6.45894 6.74317 7.18696 7.31067 7.72691 7.81199 8.49070 8.97161 9.53602 11.05604 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.052030 B = 0.002448 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.022981 B =11433.346950 C =11662.873881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.386 6.386 3 C 0.158 3.842 4 C 0.166 3.834 5 N -0.363 5.363 6 O 0.102 5.898 7 C 0.211 3.789 8 C 0.020 3.980 9 H 0.131 0.869 10 C -0.149 4.149 11 S -0.229 6.229 12 C -0.079 4.079 13 C -0.088 4.088 14 C -0.006 4.006 15 C -0.522 4.522 16 H 0.073 0.927 17 C 0.066 3.934 18 N -0.901 5.901 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.266 1.266 23 N -0.464 5.464 24 H 0.046 0.954 25 H 0.092 0.908 26 H 0.047 0.953 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.018 0.982 37 H 0.014 0.986 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.570 -9.746 -2.118 28.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C 0.079 3.921 4 C -0.107 4.107 5 N -0.068 5.068 6 O 0.038 5.962 7 C -0.010 4.010 8 C -0.111 4.111 9 H 0.149 0.851 10 C -0.209 4.209 11 S -0.001 6.001 12 C -0.227 4.227 13 C -0.127 4.127 14 C -0.046 4.046 15 C -0.560 4.560 16 H 0.091 0.909 17 C -0.135 4.135 18 N -0.540 5.540 19 Si 0.708 3.292 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.190 1.190 23 N -0.198 5.198 24 H 0.065 0.935 25 H 0.110 0.890 26 H 0.066 0.934 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.036 0.964 37 H 0.032 0.968 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -27.068 -9.180 -3.507 28.796 hybrid contribution 0.220 -0.947 1.986 2.211 sum -26.847 -10.127 -1.521 28.734 Atomic orbital electron populations 1.22823 0.79529 1.03488 1.00517 1.87935 1.20694 1.26130 1.95574 1.20389 0.82371 0.86202 1.03089 1.25294 0.99125 1.02544 0.83775 1.74657 0.89650 1.18748 1.23760 1.85381 1.22098 1.64279 1.24406 1.27729 0.95511 0.95644 0.82111 1.21547 0.88683 1.01019 0.99821 0.85105 1.22172 1.02273 0.91618 1.04834 1.87348 1.14336 1.58328 1.40055 1.23809 0.95372 1.04823 0.98744 1.21300 0.92557 0.97965 1.00923 1.19570 0.93387 0.97057 0.94562 1.21092 0.97959 1.25891 1.11100 0.90877 1.25033 0.95648 0.95167 0.97649 1.69910 1.05582 1.39062 1.39450 0.86774 0.78319 0.80518 0.83617 1.20257 1.21358 1.19037 1.71873 0.99331 1.19503 1.29130 0.93510 0.88973 0.93391 0.90074 0.89590 0.91017 0.90198 0.89764 0.89957 0.89764 0.91504 0.91600 0.96399 0.96791 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.83 10.69 -35.23 -0.38 -4.21 16 3 C 0.16 1.43 6.56 36.01 0.24 1.67 16 4 C 0.17 2.09 7.85 -156.37 -1.23 0.86 16 5 N -0.36 -5.00 12.16 30.90 0.38 -4.63 16 6 O 0.10 1.38 11.21 18.11 0.20 1.59 16 7 C 0.21 2.64 7.08 -13.06 -0.09 2.55 16 8 C 0.02 0.21 3.32 -27.88 -0.09 0.12 16 9 H 0.13 1.25 8.14 -51.92 -0.42 0.83 16 10 C -0.15 -1.32 9.08 37.16 0.34 -0.98 16 11 S -0.23 -3.08 21.06 -107.50 -2.26 -5.35 16 12 C -0.08 -1.13 5.64 37.16 0.21 -0.92 16 13 C -0.09 -1.63 5.16 -26.73 -0.14 -1.77 16 14 C -0.01 -0.14 4.04 -27.88 -0.11 -0.26 16 15 C -0.52 -14.54 9.66 -34.44 -0.33 -14.87 16 16 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 17 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 18 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 19 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 23 N -0.46 -6.08 11.55 -9.87 -0.11 -6.19 16 24 H 0.05 0.20 8.14 -51.93 -0.42 -0.23 16 25 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.68 6.92 -51.93 -0.36 0.32 16 32 H 0.08 1.08 8.14 -51.92 -0.42 0.66 16 33 H 0.08 1.07 7.14 -51.92 -0.37 0.70 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 37 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 338.40 15.07 5.10 5.10 Total: -1.00 -32.37 338.40 -6.90 -39.27 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: -5.73 Total: -4.84 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -0.20 Total: -10.50 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 1.04 Total: -37.51 kcal Atomic # 8 Polarization: -2.45 SS G_CDS: -0.17 Total: -2.62 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Atomic # 16 Polarization: -3.08 SS G_CDS: -2.26 Total: -5.35 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.37 -6.90 -39.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182134074.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.082 kcal (2) G-P(sol) polarization free energy of solvation -32.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds