Wall clock time and date at job start Tue Mar 31 2020 06:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.50703 * 109.47171 * 180.02562 * 3 2 1 5 5 N 1.29940 * 126.28912 * 90.02493 * 4 3 2 6 6 O 1.21305 * 110.25415 * 179.97438 * 5 4 3 7 7 C 1.33640 * 109.80822 * 359.97438 * 6 5 4 8 8 C 1.50698 * 126.54873 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.46914 * 165.02863 * 8 7 6 10 10 C 1.52998 * 109.47270 * 285.02713 * 8 7 6 11 11 S 1.81399 * 109.47132 * 45.03082 * 8 7 6 12 12 C 1.81403 * 103.00062 * 174.99698 * 11 8 7 13 13 C 1.52998 * 109.46954 * 180.02562 * 12 11 8 14 14 C 1.53004 * 109.46900 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.46996 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00178 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99850 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00030 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00087 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47255 * 90.00242 * 19 17 15 21 21 H 1.48503 * 109.47491 * 210.00472 * 19 17 15 22 22 H 1.48500 * 109.47223 * 330.00440 * 19 17 15 23 23 N 1.31131 * 106.89864 * 359.77574 * 7 6 5 24 24 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 25 25 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 27 27 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 28 28 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 29 29 H 1.09000 * 109.47697 * 300.00486 * 10 8 7 30 30 H 1.09002 * 109.47030 * 60.00221 * 10 8 7 31 31 H 1.08998 * 109.47116 * 179.97438 * 10 8 7 32 32 H 1.09005 * 109.46866 * 300.00336 * 12 11 8 33 33 H 1.09002 * 109.47115 * 59.99925 * 12 11 8 34 34 H 1.08995 * 109.47227 * 300.00285 * 13 12 11 35 35 H 1.08997 * 109.47206 * 60.00467 * 13 12 11 36 36 H 1.08995 * 109.47527 * 300.00240 * 14 13 12 37 37 H 1.09002 * 109.47029 * 60.00010 * 14 13 12 38 38 H 0.96997 * 120.00215 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.2789 1.1263 -1.0483 6 8 5.4412 1.0345 -0.7137 7 6 5.5295 1.0277 0.6197 8 6 6.7929 0.9274 1.4350 9 1 6.5831 1.2106 2.4665 10 6 7.3119 -0.5113 1.3966 11 16 8.0475 2.0415 0.7454 12 6 9.4148 1.8988 1.9290 13 6 10.5718 2.7945 1.4820 14 6 11.7248 2.6747 2.4806 15 6 12.8641 3.5575 2.0407 16 1 12.7747 4.1455 1.1393 17 6 14.0208 3.6144 2.7891 18 7 15.0149 4.3851 2.4054 19 14 14.1752 2.5978 4.3486 20 1 14.7494 1.2687 4.0183 21 1 15.0660 3.2971 5.3092 22 1 12.8329 2.4194 4.9581 23 7 4.3070 1.1292 1.0832 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 1.6887 1.8463 0.8900 29 1 6.5581 -1.1808 1.8109 30 1 7.5217 -0.7945 0.3651 31 1 8.2260 -0.5837 1.9859 32 1 9.0746 2.2109 2.9165 33 1 9.7520 0.8631 1.9715 34 1 10.9120 2.4829 0.4945 35 1 10.2343 3.8301 1.4400 36 1 11.3843 2.9866 3.4679 37 1 12.0624 1.6392 2.5232 38 1 15.8285 4.4255 2.9321 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182134074.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:21 Heat of formation + Delta-G solvation = -9.534679 kcal Electronic energy + Delta-G solvation = -19294.042568 eV Core-core repulsion = 16072.425629 eV Total energy + Delta-G solvation = -3221.616939 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -46.88483 -39.16312 -37.16435 -36.36959 -35.87369 -34.13897 -32.49069 -29.88741 -29.68851 -26.95333 -26.18782 -25.10887 -24.56269 -22.61133 -21.85500 -19.46831 -19.07777 -18.75982 -17.49911 -17.38864 -16.94927 -16.71420 -16.50987 -16.29993 -16.16878 -15.31638 -14.69383 -14.53214 -14.07155 -13.91728 -13.85973 -13.65843 -13.38233 -13.26607 -13.09252 -12.88405 -12.70292 -12.59789 -12.37494 -12.34178 -11.78521 -11.60655 -11.52018 -11.33215 -11.19277 -10.89725 -10.87074 -10.73230 -8.80793 -8.25947 -6.31116 -0.31257 0.38296 0.90492 1.34507 1.40636 1.43078 1.54535 1.55054 2.21497 2.40042 2.68136 3.09695 3.13656 3.53954 3.65863 3.92269 4.04188 4.08121 4.09789 4.24271 4.43081 4.46052 4.52633 4.56063 4.61347 4.67286 4.72368 4.82037 4.82632 4.89281 5.04687 5.13334 5.50276 5.58196 5.68339 5.93008 6.30774 6.77589 6.85510 7.33344 8.91063 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.052030 B = 0.002448 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.022981 B =11433.346950 C =11662.873881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.156 3.844 4 C 0.164 3.836 5 N -0.384 5.384 6 O 0.086 5.914 7 C 0.211 3.789 8 C 0.034 3.966 9 H 0.149 0.851 10 C -0.147 4.147 11 S -0.261 6.261 12 C -0.067 4.067 13 C -0.082 4.082 14 C -0.004 4.004 15 C -0.536 4.536 16 H 0.026 0.974 17 C -0.001 4.001 18 N -0.955 5.955 19 Si 0.956 3.044 20 H -0.265 1.265 21 H -0.289 1.289 22 H -0.237 1.237 23 N -0.476 5.476 24 H 0.059 0.941 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.028 0.972 37 H 0.029 0.971 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.562 -11.704 -0.139 30.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.333 6.333 3 C 0.078 3.922 4 C -0.110 4.110 5 N -0.092 5.092 6 O 0.026 5.974 7 C -0.010 4.010 8 C -0.096 4.096 9 H 0.167 0.833 10 C -0.207 4.207 11 S -0.034 6.034 12 C -0.215 4.215 13 C -0.121 4.121 14 C -0.044 4.044 15 C -0.574 4.574 16 H 0.045 0.955 17 C -0.198 4.198 18 N -0.595 5.595 19 Si 0.779 3.221 20 H -0.190 1.190 21 H -0.215 1.215 22 H -0.160 1.160 23 N -0.210 5.210 24 H 0.078 0.922 25 H 0.119 0.881 26 H 0.080 0.920 27 H 0.116 0.884 28 H 0.123 0.877 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.047 0.953 37 H 0.048 0.952 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -29.069 -11.144 -1.539 31.169 hybrid contribution 0.757 -0.283 1.264 1.500 sum -28.312 -11.427 -0.275 30.532 Atomic orbital electron populations 1.23050 0.77417 1.04552 1.01878 1.87882 1.23017 1.26581 1.95851 1.20623 0.80355 0.86412 1.04819 1.25994 1.00619 1.01091 0.83280 1.74651 0.89869 1.20087 1.24601 1.85353 1.22267 1.64799 1.24993 1.28103 0.96070 0.94906 0.81906 1.21668 0.86784 1.01327 0.99843 0.83342 1.22201 1.03187 0.90247 1.05021 1.87500 1.15488 1.59877 1.40524 1.23560 0.93908 1.04852 0.99199 1.21050 0.93250 0.98336 0.99450 1.19506 0.92741 0.96367 0.95749 1.21513 1.00187 1.26082 1.09609 0.95511 1.26122 0.95086 0.96617 1.01955 1.70089 1.06515 1.41425 1.41507 0.85578 0.79606 0.78593 0.78365 1.19014 1.21501 1.16036 1.71888 0.99597 1.20077 1.29486 0.92195 0.88137 0.91964 0.88410 0.87744 0.89704 0.90655 0.88338 0.88244 0.87604 0.92789 0.93113 0.95324 0.95235 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.41 -7.63 10.69 -148.98 -1.59 -9.22 16 3 C 0.16 2.58 6.56 71.24 0.47 3.05 16 4 C 0.16 3.95 7.85 138.46 1.09 5.04 16 5 N -0.38 -10.42 12.16 -60.32 -0.73 -11.15 16 6 O 0.09 2.30 11.21 74.86 0.84 3.14 16 7 C 0.21 5.01 7.08 88.38 0.63 5.63 16 8 C 0.03 0.65 3.32 29.85 0.10 0.75 16 9 H 0.15 2.36 8.14 -2.39 -0.02 2.34 16 10 C -0.15 -2.17 9.08 71.98 0.65 -1.52 16 11 S -0.26 -6.66 21.06 -56.49 -1.19 -7.85 16 12 C -0.07 -1.73 5.64 71.98 0.41 -1.32 16 13 C -0.08 -2.97 5.16 30.59 0.16 -2.81 16 14 C 0.00 -0.19 4.04 29.85 0.12 -0.07 16 15 C -0.54 -30.42 9.66 25.60 0.25 -30.18 16 16 H 0.03 1.70 7.99 -2.91 -0.02 1.67 16 17 C 0.00 -0.09 5.47 84.66 0.46 0.38 16 18 N -0.95 -59.86 13.96 21.45 0.30 -59.56 16 19 Si 0.96 42.62 27.47 68.60 1.88 44.50 16 20 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 21 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.24 -9.43 6.54 99.48 0.65 -8.78 16 23 N -0.48 -11.78 11.55 -303.19 -3.50 -15.28 16 24 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 25 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.10 1.20 6.92 -2.39 -0.02 1.19 16 32 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.11 2.28 7.14 -2.39 -0.02 2.26 16 34 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.03 1.19 7.20 -2.39 -0.02 1.17 16 37 H 0.03 1.20 7.57 -2.39 -0.02 1.18 16 38 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -72.19 338.40 2.57 -69.62 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: 0.99 Total: 5.38 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: 5.57 Total: -19.57 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -3.94 Total: -86.00 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.75 Total: -6.08 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.88 Total: 44.50 kcal Atomic # 16 Polarization: -6.66 SS G_CDS: -1.19 Total: -7.85 kcal Total: -72.19 2.57 -69.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182134074.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.090 kcal (2) G-P(sol) polarization free energy of solvation -72.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds