Wall clock time and date at job start Tue Mar 31 2020 06:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47198 * 2 1 4 4 N 1.46501 * 109.47271 * 119.99710 * 2 1 3 5 5 C 1.46500 * 120.00126 * 119.20611 * 4 2 1 6 6 C 1.50700 * 109.47061 * 270.00389 * 5 4 2 7 7 H 1.07995 * 120.00222 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99769 * 180.02562 * 6 5 4 9 9 N 1.31508 * 119.99772 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 120.00016 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46921 * 90.00276 * 10 8 6 12 12 H 1.48500 * 109.47247 * 210.00357 * 10 8 6 13 13 H 1.48506 * 109.47230 * 330.00597 * 10 8 6 14 14 C 1.34783 * 119.99879 * 299.21311 * 4 2 1 15 15 O 1.21279 * 119.99983 * 5.29651 * 14 4 2 16 16 C 1.50698 * 119.99729 * 185.30272 * 14 4 2 17 17 N 1.46497 * 109.46767 * 179.48823 * 16 14 4 18 18 C 1.44541 * 120.61751 * 270.00312 * 17 16 14 19 19 C 1.53429 * 111.71830 * 180.02562 * 18 17 16 20 20 S 1.82064 * 103.93689 * 359.78298 * 19 18 17 21 21 C 1.33011 * 120.61693 * 90.02879 * 17 16 14 22 22 O 1.21622 * 125.19631 * 359.93752 * 21 17 16 23 23 H 1.08998 * 109.47101 * 306.60604 * 1 2 3 24 24 H 1.09004 * 109.46560 * 66.60452 * 1 2 3 25 25 H 1.09004 * 109.46669 * 186.59984 * 1 2 3 26 26 H 1.09001 * 109.47240 * 239.99728 * 2 1 3 27 27 H 1.08996 * 109.47599 * 173.86592 * 3 2 1 28 28 H 1.08999 * 109.46971 * 293.86590 * 3 2 1 29 29 H 1.08995 * 109.47361 * 53.86416 * 3 2 1 30 30 H 1.09001 * 109.46909 * 30.00200 * 5 4 2 31 31 H 1.08997 * 109.47163 * 150.00254 * 5 4 2 32 32 H 0.97002 * 120.00028 * 179.97438 * 9 8 6 33 33 H 1.09002 * 109.46990 * 59.49301 * 16 14 4 34 34 H 1.08998 * 109.47286 * 299.49213 * 16 14 4 35 35 H 1.09002 * 109.03985 * 300.61299 * 18 17 16 36 36 H 1.08994 * 109.03973 * 59.42775 * 18 17 16 37 37 H 1.09009 * 110.53447 * 118.61522 * 19 18 17 38 38 H 1.08997 * 110.53217 * 241.24404 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.8462 -1.8917 1.0619 6 6 1.9608 -3.1107 1.0272 7 1 0.8888 -3.0017 1.0985 8 6 2.5196 -4.3654 0.9055 9 7 1.7469 -5.4291 0.8747 10 14 4.3740 -4.5541 0.7829 11 1 4.9474 -4.7028 2.1446 12 1 4.6968 -5.7579 -0.0243 13 1 4.9519 -3.3514 0.1311 14 6 1.7059 -0.2208 2.4203 15 8 0.9430 0.7151 2.5341 16 6 2.3047 -0.8585 3.6474 17 7 1.8217 -0.1640 4.8435 18 6 2.5440 0.9671 5.3801 19 6 1.8604 1.5360 6.6303 20 16 0.3974 0.4752 6.8513 21 6 0.7105 -0.5631 5.4562 22 8 0.0138 -1.4966 5.1065 23 1 -0.3633 0.6128 0.8249 24 1 -0.3632 0.4081 -0.9432 25 1 -0.3633 -1.0209 0.1181 26 1 1.8934 -0.5139 -0.8900 27 1 3.1244 1.4445 0.1098 28 1 1.7691 1.9236 -0.9398 29 1 1.5898 1.9870 0.8299 30 1 3.4222 -1.8346 0.1383 31 1 3.5266 -1.9609 1.9107 32 1 2.1400 -6.3117 0.7887 33 1 3.3914 -0.7877 3.6002 34 1 2.0105 -1.9070 3.6923 35 1 3.5549 0.6529 5.6395 36 1 2.6002 1.7462 4.6199 37 1 2.5222 1.4651 7.4937 38 1 1.5597 2.5705 6.4644 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750575622.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:07 Heat of formation + Delta-G solvation = -55.946003 kcal Electronic energy + Delta-G solvation = -21663.345009 eV Core-core repulsion = 18439.715523 eV Total energy + Delta-G solvation = -3223.629485 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.28954 -38.90936 -36.57688 -35.43241 -33.28157 -32.08360 -31.10440 -28.07091 -27.34589 -26.69938 -24.76120 -22.73635 -22.01480 -20.58941 -18.42458 -18.12363 -17.07000 -16.78434 -16.56102 -15.74199 -15.35301 -14.79882 -14.44211 -14.20834 -14.07305 -13.94833 -13.57122 -13.09451 -13.05438 -12.75839 -12.54817 -12.27669 -12.22364 -11.92859 -11.72871 -11.37536 -11.02857 -10.96378 -10.88726 -10.70691 -10.45540 -10.28444 -9.72172 -9.63711 -9.48972 -8.77945 -8.70342 -8.18044 -7.83269 -6.22286 -4.25315 1.18112 1.81366 2.42048 3.06939 3.13180 3.18802 3.19881 3.23296 3.79137 4.10986 4.22904 4.50945 4.98905 5.08408 5.13305 5.19827 5.24841 5.39045 5.49245 5.59697 5.71342 5.83301 6.01083 6.02785 6.12700 6.24630 6.40325 6.41546 6.52444 6.63360 6.88534 6.97975 7.32859 7.39475 7.77153 8.05772 8.37217 8.77121 8.88460 9.35147 10.90393 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.015467 B = 0.006170 C = 0.005182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.878042 B = 4536.869238 C = 5402.524300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.150 3.850 3 C -0.163 4.163 4 N -0.585 5.585 5 C 0.207 3.793 6 C -0.544 4.544 7 H 0.080 0.920 8 C 0.077 3.923 9 N -0.886 5.886 10 Si 0.870 3.130 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.264 1.264 14 C 0.507 3.493 15 O -0.553 6.553 16 C 0.099 3.901 17 N -0.592 5.592 18 C 0.102 3.898 19 C -0.095 4.095 20 S -0.193 6.193 21 C 0.553 3.447 22 O -0.469 6.469 23 H 0.072 0.928 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.085 0.915 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.036 0.964 31 H 0.026 0.974 32 H 0.267 0.733 33 H 0.108 0.892 34 H 0.131 0.869 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.115 0.885 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.516 14.445 6.736 17.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.046 3.954 3 C -0.221 4.221 4 N -0.316 5.316 5 C 0.086 3.914 6 C -0.583 4.583 7 H 0.098 0.902 8 C -0.127 4.127 9 N -0.523 5.523 10 Si 0.697 3.303 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.189 1.189 14 C 0.294 3.706 15 O -0.433 6.433 16 C -0.030 4.030 17 N -0.328 5.328 18 C -0.022 4.022 19 C -0.244 4.244 20 S 0.032 5.968 21 C 0.230 3.770 22 O -0.344 6.344 23 H 0.091 0.909 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.103 0.897 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.126 0.874 34 H 0.149 0.851 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.133 0.867 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.847 14.202 7.409 16.736 hybrid contribution 1.931 -0.469 -1.073 2.258 sum 6.778 13.733 6.336 16.574 Atomic orbital electron populations 1.22164 0.95224 1.03107 1.01678 1.20865 0.94699 0.92049 0.87749 1.22179 1.00594 0.96956 1.02396 1.48034 1.51247 1.27946 1.04378 1.19878 0.90911 0.83249 0.97368 1.21393 0.95644 0.88971 1.52263 0.90161 1.24903 0.97826 0.95706 0.94285 1.69895 1.35308 0.98406 1.48702 0.86951 0.86110 0.78449 0.78827 1.19849 1.20806 1.18896 1.20601 0.81667 0.83452 0.84908 1.90568 1.36086 1.30136 1.86534 1.21588 0.99930 0.99354 0.82132 1.47413 1.25312 1.32031 1.28019 1.21326 0.95858 0.89409 0.95640 1.24118 0.96949 1.02543 1.00772 1.87311 1.34750 1.36676 1.38083 1.21522 0.82408 0.86911 0.86112 1.90936 1.48916 1.28740 1.65836 0.90943 0.93058 0.91990 0.89730 0.93213 0.92418 0.91054 0.94630 0.95592 0.92300 0.87414 0.85072 0.89429 0.89160 0.86698 0.86728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 9.01 37.16 0.33 -2.67 16 2 C 0.15 2.66 3.28 -67.93 -0.22 2.43 16 3 C -0.16 -2.42 9.01 37.16 0.33 -2.09 16 4 N -0.58 -11.48 2.41 -167.47 -0.40 -11.88 16 5 C 0.21 4.38 4.03 -5.19 -0.02 4.35 16 6 C -0.54 -14.29 9.94 -34.44 -0.34 -14.63 16 7 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 8 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 9 N -0.89 -25.99 13.96 55.43 0.77 -25.22 16 10 Si 0.87 19.31 27.47 -169.99 -4.67 14.64 16 11 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 13 H -0.26 -5.45 6.54 56.52 0.37 -5.08 16 14 C 0.51 9.85 7.15 -10.98 -0.08 9.77 16 15 O -0.55 -11.50 12.82 5.56 0.07 -11.43 16 16 C 0.10 1.68 4.50 -5.20 -0.02 1.66 16 17 N -0.59 -9.18 2.27 -180.65 -0.41 -9.59 16 18 C 0.10 1.04 6.80 -4.87 -0.03 1.01 16 19 C -0.09 -0.82 7.42 37.38 0.28 -0.54 16 20 S -0.19 -2.70 23.25 -107.50 -2.50 -5.20 16 21 C 0.55 10.16 8.27 53.27 0.44 10.60 16 22 O -0.47 -10.84 17.28 5.26 0.09 -10.74 16 23 H 0.07 1.43 6.27 -51.93 -0.33 1.11 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.08 1.46 7.79 -51.93 -0.40 1.06 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.16 6.47 -51.93 -0.34 0.83 16 30 H 0.04 0.74 6.97 -51.93 -0.36 0.37 16 31 H 0.03 0.51 5.86 -51.93 -0.30 0.20 16 32 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 33 H 0.11 1.44 7.50 -51.93 -0.39 1.05 16 34 H 0.13 2.64 7.57 -51.93 -0.39 2.24 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.11 0.67 8.14 -51.92 -0.42 0.25 16 38 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 325.01 15.07 4.90 4.90 Total: -1.00 -33.14 325.01 -7.07 -40.21 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.49 Total: 2.44 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: 0.57 Total: 11.88 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -0.04 Total: -46.70 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: 0.16 Total: -22.17 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.67 Total: 14.64 kcal Atomic # 16 Polarization: -2.70 SS G_CDS: -2.50 Total: -5.20 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.14 -7.07 -40.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750575622.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.737 kcal (2) G-P(sol) polarization free energy of solvation -33.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds