Wall clock time and date at job start Tue Mar 31 2020 06:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47198 * 2 1 4 4 N 1.46501 * 109.47271 * 119.99710 * 2 1 3 5 5 C 1.46500 * 120.00126 * 119.20611 * 4 2 1 6 6 C 1.50700 * 109.47061 * 270.00389 * 5 4 2 7 7 H 1.07995 * 120.00222 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99769 * 180.02562 * 6 5 4 9 9 N 1.31508 * 119.99772 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 120.00016 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46921 * 90.00276 * 10 8 6 12 12 H 1.48500 * 109.47247 * 210.00357 * 10 8 6 13 13 H 1.48506 * 109.47230 * 330.00597 * 10 8 6 14 14 C 1.34783 * 119.99879 * 299.21311 * 4 2 1 15 15 O 1.21279 * 119.99983 * 5.29651 * 14 4 2 16 16 C 1.50698 * 119.99729 * 185.30272 * 14 4 2 17 17 N 1.46497 * 109.46767 * 179.48823 * 16 14 4 18 18 C 1.44541 * 120.61751 * 270.00312 * 17 16 14 19 19 C 1.53429 * 111.71830 * 180.02562 * 18 17 16 20 20 S 1.82064 * 103.93689 * 359.78298 * 19 18 17 21 21 C 1.33011 * 120.61693 * 90.02879 * 17 16 14 22 22 O 1.21622 * 125.19631 * 359.93752 * 21 17 16 23 23 H 1.08998 * 109.47101 * 306.60604 * 1 2 3 24 24 H 1.09004 * 109.46560 * 66.60452 * 1 2 3 25 25 H 1.09004 * 109.46669 * 186.59984 * 1 2 3 26 26 H 1.09001 * 109.47240 * 239.99728 * 2 1 3 27 27 H 1.08996 * 109.47599 * 173.86592 * 3 2 1 28 28 H 1.08999 * 109.46971 * 293.86590 * 3 2 1 29 29 H 1.08995 * 109.47361 * 53.86416 * 3 2 1 30 30 H 1.09001 * 109.46909 * 30.00200 * 5 4 2 31 31 H 1.08997 * 109.47163 * 150.00254 * 5 4 2 32 32 H 0.97002 * 120.00028 * 179.97438 * 9 8 6 33 33 H 1.09002 * 109.46990 * 59.49301 * 16 14 4 34 34 H 1.08998 * 109.47286 * 299.49213 * 16 14 4 35 35 H 1.09002 * 109.03985 * 300.61299 * 18 17 16 36 36 H 1.08994 * 109.03973 * 59.42775 * 18 17 16 37 37 H 1.09009 * 110.53447 * 118.61522 * 19 18 17 38 38 H 1.08997 * 110.53217 * 241.24404 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.8462 -1.8917 1.0619 6 6 1.9608 -3.1107 1.0272 7 1 0.8888 -3.0017 1.0985 8 6 2.5196 -4.3654 0.9055 9 7 1.7469 -5.4291 0.8747 10 14 4.3740 -4.5541 0.7829 11 1 4.9474 -4.7028 2.1446 12 1 4.6968 -5.7579 -0.0243 13 1 4.9519 -3.3514 0.1311 14 6 1.7059 -0.2208 2.4203 15 8 0.9430 0.7151 2.5341 16 6 2.3047 -0.8585 3.6474 17 7 1.8217 -0.1640 4.8435 18 6 2.5440 0.9671 5.3801 19 6 1.8604 1.5360 6.6303 20 16 0.3974 0.4752 6.8513 21 6 0.7105 -0.5631 5.4562 22 8 0.0138 -1.4966 5.1065 23 1 -0.3633 0.6128 0.8249 24 1 -0.3632 0.4081 -0.9432 25 1 -0.3633 -1.0209 0.1181 26 1 1.8934 -0.5139 -0.8900 27 1 3.1244 1.4445 0.1098 28 1 1.7691 1.9236 -0.9398 29 1 1.5898 1.9870 0.8299 30 1 3.4222 -1.8346 0.1383 31 1 3.5266 -1.9609 1.9107 32 1 2.1400 -6.3117 0.7887 33 1 3.3914 -0.7877 3.6002 34 1 2.0105 -1.9070 3.6923 35 1 3.5549 0.6529 5.6395 36 1 2.6002 1.7462 4.6199 37 1 2.5222 1.4651 7.4937 38 1 1.5597 2.5705 6.4644 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750575622.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:06 Heat of formation + Delta-G solvation = -79.495081 kcal Electronic energy + Delta-G solvation = -21664.366173 eV Core-core repulsion = 18439.715523 eV Total energy + Delta-G solvation = -3224.650650 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.66579 -40.35267 -37.89368 -36.98111 -35.04660 -33.73130 -32.22739 -29.71258 -28.86174 -28.05730 -25.78869 -24.47119 -23.47005 -21.87291 -19.88855 -19.31868 -19.05796 -18.13973 -18.01224 -16.97858 -16.78506 -16.35383 -15.92018 -15.51672 -15.29433 -15.22800 -14.99741 -14.72873 -14.34769 -14.23073 -13.89555 -13.75112 -13.32110 -13.26416 -13.09827 -12.82139 -12.62002 -12.55594 -12.19659 -11.97303 -11.95863 -11.88297 -11.65555 -11.10603 -10.88638 -10.79253 -10.10170 -9.45432 -9.25712 -8.29119 -6.39022 -0.01328 0.91197 1.05516 1.40444 1.43603 1.53477 1.62863 1.93413 2.35598 2.38106 3.04481 3.30712 3.54872 3.92800 3.97294 4.09462 4.22151 4.34936 4.39153 4.45213 4.58813 4.61630 4.72170 4.74345 4.76203 4.87285 4.92306 4.96203 4.99071 5.26570 5.36960 5.44366 5.79564 5.80681 6.17468 6.45979 6.60687 6.70439 7.20835 7.31510 8.88452 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.015467 B = 0.006170 C = 0.005182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.878042 B = 4536.869238 C = 5402.524300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.138 3.862 3 C -0.147 4.147 4 N -0.591 5.591 5 C 0.215 3.785 6 C -0.546 4.546 7 H 0.014 0.986 8 C 0.009 3.991 9 N -0.949 5.949 10 Si 0.951 3.049 11 H -0.258 1.258 12 H -0.289 1.289 13 H -0.225 1.225 14 C 0.501 3.499 15 O -0.570 6.570 16 C 0.100 3.900 17 N -0.587 5.587 18 C 0.090 3.910 19 C -0.076 4.076 20 S -0.202 6.202 21 C 0.529 3.471 22 O -0.545 6.545 23 H 0.054 0.946 24 H 0.082 0.918 25 H 0.019 0.981 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.267 0.733 33 H 0.155 0.845 34 H 0.092 0.908 35 H 0.130 0.870 36 H 0.099 0.901 37 H 0.156 0.844 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.807 17.543 7.187 21.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.035 3.965 3 C -0.205 4.205 4 N -0.322 5.322 5 C 0.093 3.907 6 C -0.585 4.585 7 H 0.033 0.967 8 C -0.189 4.189 9 N -0.589 5.589 10 Si 0.772 3.228 11 H -0.183 1.183 12 H -0.216 1.216 13 H -0.148 1.148 14 C 0.289 3.711 15 O -0.451 6.451 16 C -0.030 4.030 17 N -0.321 5.321 18 C -0.033 4.033 19 C -0.224 4.224 20 S 0.024 5.976 21 C 0.208 3.792 22 O -0.426 6.426 23 H 0.073 0.927 24 H 0.101 0.899 25 H 0.038 0.962 26 H 0.109 0.891 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.172 0.828 34 H 0.110 0.890 35 H 0.148 0.852 36 H 0.117 0.883 37 H 0.174 0.826 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 9.168 17.396 7.883 21.185 hybrid contribution 0.466 -1.335 -1.176 1.839 sum 9.633 16.061 6.707 19.894 Atomic orbital electron populations 1.22082 0.96554 1.00143 1.02599 1.21134 0.93745 0.94208 0.87372 1.22031 1.01261 0.94115 1.03093 1.48118 1.51292 1.27534 1.05223 1.19752 0.90348 0.81351 0.99270 1.21579 0.93438 0.91799 1.51647 0.96709 1.26020 1.04491 0.94818 0.93532 1.70110 1.38468 0.99254 1.51062 0.85681 0.77948 0.79483 0.79675 1.18288 1.21551 1.14786 1.21047 0.81335 0.83257 0.85498 1.90552 1.36585 1.31143 1.86839 1.21517 1.02324 0.97185 0.81930 1.47652 1.24675 1.32812 1.27005 1.21810 0.97172 0.87966 0.96335 1.24509 0.94257 1.02036 1.01609 1.87276 1.38440 1.36822 1.35067 1.22298 0.82575 0.86866 0.87420 1.90886 1.51301 1.31871 1.68579 0.92725 0.89929 0.96200 0.89137 0.91589 0.89879 0.92670 0.92626 0.92673 0.92372 0.82751 0.89023 0.85229 0.88287 0.82597 0.84299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.90 9.01 71.98 0.65 -5.25 16 2 C 0.14 4.78 3.28 44.99 0.15 4.93 16 3 C -0.15 -3.95 9.01 71.98 0.65 -3.30 16 4 N -0.59 -22.91 2.41 -802.14 -1.93 -24.84 16 5 C 0.21 8.77 4.03 85.63 0.35 9.12 16 6 C -0.55 -29.85 9.94 25.60 0.25 -29.59 16 7 H 0.01 0.96 8.06 -2.91 -0.02 0.94 16 8 C 0.01 0.52 5.47 84.66 0.46 0.98 16 9 N -0.95 -58.69 13.96 21.45 0.30 -58.39 16 10 Si 0.95 38.92 27.47 68.60 1.88 40.80 16 11 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 12 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 13 H -0.23 -7.79 6.54 99.48 0.65 -7.14 16 14 C 0.50 19.43 7.15 87.66 0.63 20.05 16 15 O -0.57 -23.86 12.82 -3.03 -0.04 -23.90 16 16 C 0.10 3.34 4.50 85.63 0.39 3.73 16 17 N -0.59 -17.61 2.27 -844.69 -1.91 -19.52 16 18 C 0.09 1.46 6.80 86.89 0.59 2.05 16 19 C -0.08 -0.97 7.42 72.13 0.54 -0.44 16 20 S -0.20 -5.44 23.25 -56.49 -1.31 -6.76 16 21 C 0.53 20.05 8.27 130.06 1.08 21.13 16 22 O -0.55 -27.37 17.28 -4.10 -0.07 -27.44 16 23 H 0.05 2.24 6.27 -2.39 -0.01 2.23 16 24 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 25 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.09 3.00 7.79 -2.39 -0.02 2.98 16 27 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 29 H 0.05 1.68 6.47 -2.39 -0.02 1.66 16 30 H 0.06 2.10 6.97 -2.39 -0.02 2.08 16 31 H 0.06 1.97 5.86 -2.39 -0.01 1.95 16 32 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 33 H 0.16 3.57 7.50 -2.39 -0.02 3.55 16 34 H 0.09 3.87 7.57 -2.39 -0.02 3.85 16 35 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.10 1.53 8.14 -2.39 -0.02 1.52 16 37 H 0.16 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -82.91 325.01 3.64 -79.27 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 1.00 Total: 17.37 kcal Atomic # 6 Polarization: 17.69 SS G_CDS: 5.72 Total: 23.41 kcal Atomic # 7 Polarization: -99.21 SS G_CDS: -3.54 Total: -102.76 kcal Atomic # 8 Polarization: -51.23 SS G_CDS: -0.11 Total: -51.34 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 1.88 Total: 40.80 kcal Atomic # 16 Polarization: -5.44 SS G_CDS: -1.31 Total: -6.76 kcal Total: -82.91 3.64 -79.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750575622.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.224 kcal (2) G-P(sol) polarization free energy of solvation -82.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds