Wall clock time and date at job start Tue Mar 31 2020 06:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 N 1.46492 * 109.47363 * 120.00161 * 2 1 3 5 5 C 1.46499 * 120.00171 * 300.00256 * 4 2 1 6 6 C 1.50702 * 109.47038 * 89.99815 * 5 4 2 7 7 H 1.07992 * 120.00467 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99865 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00012 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00200 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47221 * 89.99570 * 10 8 6 12 12 H 1.48495 * 109.47011 * 210.00218 * 10 8 6 13 13 H 1.48507 * 109.46833 * 329.99719 * 10 8 6 14 14 C 1.34779 * 119.99992 * 120.00099 * 4 2 1 15 15 O 1.21283 * 119.99789 * 180.02562 * 14 4 2 16 16 C 1.50697 * 120.00035 * 359.97438 * 14 4 2 17 17 H 1.08999 * 108.86384 * 38.59290 * 16 14 4 18 18 C 1.52819 * 108.89056 * 280.00171 * 16 14 4 19 19 S 1.82058 * 108.21874 * 187.42156 * 18 16 14 20 20 C 1.81853 * 101.23552 * 61.40944 * 19 18 16 21 21 C 1.50142 * 109.06286 * 315.90361 * 20 19 18 22 22 O 1.21284 * 116.82743 * 200.59846 * 21 20 19 23 23 N 1.31770 * 126.34308 * 20.57858 * 21 20 19 24 24 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 27 27 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 28 28 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 29 29 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 31 31 H 1.08994 * 109.47510 * 209.99690 * 5 4 2 32 32 H 1.09004 * 109.47127 * 330.00276 * 5 4 2 33 33 H 0.97000 * 120.00398 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.71511 * 307.10191 * 18 16 14 35 35 H 1.08999 * 109.71303 * 67.74066 * 18 16 14 36 36 H 1.08996 * 109.53598 * 75.78459 * 20 19 18 37 37 H 1.08999 * 109.53621 * 196.03239 * 20 19 18 38 38 H 0.97003 * 115.07750 * 173.50364 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6645 -0.1902 2.5267 6 6 0.3831 -0.8390 2.9829 7 1 -0.1174 -1.5529 2.3457 8 6 -0.1504 -0.5210 4.2139 9 7 -1.2689 -1.0868 4.6119 10 14 0.7149 0.7145 5.3160 11 1 0.2096 2.0794 5.0216 12 1 0.4456 0.3829 6.7381 13 1 2.1775 0.6631 5.0641 14 6 2.7933 -1.7864 1.0723 15 8 3.1972 -2.3584 2.0626 16 6 3.1569 -2.3015 -0.2964 17 1 3.3443 -1.4527 -0.9541 18 6 1.9820 -3.1066 -0.8502 19 16 2.5165 -3.9024 -2.3979 20 6 3.8712 -4.9598 -1.8032 21 6 4.7239 -4.1742 -0.8492 22 8 5.8522 -4.5784 -0.6634 23 7 4.3658 -3.0882 -0.1945 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 2.4629 -0.4294 3.2291 32 1 1.5295 0.8906 2.4843 33 1 -1.6441 -0.8634 5.4781 34 1 1.6853 -3.8680 -0.1287 35 1 1.1420 -2.4413 -1.0499 36 1 3.4576 -5.8289 -1.2917 37 1 4.4765 -5.2867 -2.6487 38 1 5.0115 -2.7677 0.4545 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931326319.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:03 Heat of formation + Delta-G solvation = -57.387289 kcal Electronic energy + Delta-G solvation = -21630.155503 eV Core-core repulsion = 18406.463519 eV Total energy + Delta-G solvation = -3223.691984 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.68350 -39.35788 -36.50245 -35.59933 -32.86999 -31.29604 -30.97093 -30.23178 -28.18063 -26.92661 -25.07102 -22.62290 -21.67631 -20.25269 -18.90269 -17.73618 -17.30297 -17.00503 -16.67797 -16.25125 -15.53508 -15.13355 -14.78236 -14.36373 -14.11763 -13.80446 -13.60409 -13.45738 -13.18201 -12.73850 -12.58726 -12.41465 -12.04500 -11.94959 -11.80723 -11.64814 -11.14251 -11.03660 -10.95326 -10.59371 -10.56890 -10.20522 -10.13403 -9.71509 -9.57289 -8.99075 -8.67936 -8.07203 -7.97190 -6.17879 -4.16774 1.18723 1.86039 2.44700 2.79125 2.98204 3.19107 3.28635 3.31541 3.53099 4.07810 4.30974 4.35038 4.55218 4.63258 4.81911 4.98164 5.11826 5.14220 5.15811 5.28293 5.36700 5.51747 5.80458 5.91280 6.06199 6.16077 6.33359 6.46093 6.55989 6.80688 6.85475 7.07089 7.17973 7.49262 7.87147 7.97533 8.33146 8.59655 8.84836 9.41752 10.94908 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.021357 B = 0.005246 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.715409 B = 5336.612019 C = 5674.473534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.124 3.876 3 C -0.164 4.164 4 N -0.576 5.576 5 C 0.215 3.785 6 C -0.526 4.526 7 H 0.077 0.923 8 C 0.074 3.926 9 N -0.894 5.894 10 Si 0.870 3.130 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.499 3.501 15 O -0.523 6.523 16 C 0.124 3.876 17 H 0.107 0.893 18 C -0.095 4.095 19 S -0.225 6.225 20 C -0.104 4.104 21 C 0.528 3.472 22 O -0.549 6.549 23 N -0.690 5.690 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.041 0.959 32 H 0.031 0.969 33 H 0.265 0.735 34 H 0.106 0.894 35 H 0.136 0.864 36 H 0.124 0.876 37 H 0.141 0.859 38 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.587 0.923 -14.790 15.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.020 3.980 3 C -0.222 4.222 4 N -0.308 5.308 5 C 0.094 3.906 6 C -0.565 4.565 7 H 0.095 0.905 8 C -0.129 4.129 9 N -0.533 5.533 10 Si 0.697 3.303 11 H -0.201 1.201 12 H -0.209 1.209 13 H -0.189 1.189 14 C 0.281 3.719 15 O -0.399 6.399 16 C 0.012 3.988 17 H 0.125 0.875 18 C -0.243 4.243 19 S 0.002 5.998 20 C -0.255 4.255 21 C 0.312 3.688 22 O -0.429 6.429 23 N -0.341 5.341 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.124 0.876 35 H 0.154 0.846 36 H 0.142 0.858 37 H 0.159 0.841 38 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 5.629 0.429 -15.270 16.280 hybrid contribution 0.672 0.628 2.156 2.344 sum 6.301 1.056 -13.114 14.587 Atomic orbital electron populations 1.22172 0.93689 1.02953 1.02848 1.21232 0.95934 0.93403 0.87383 1.22178 1.01027 0.96134 1.02859 1.48040 1.47872 1.26341 1.08529 1.19719 0.97465 0.94488 0.78883 1.21263 1.05959 1.26064 1.03171 0.90453 1.24834 0.94673 0.96029 0.97327 1.69877 1.19525 1.43001 1.20854 0.86935 0.80844 0.81765 0.80748 1.20061 1.20938 1.18920 1.20200 0.80429 0.81564 0.89721 1.90746 1.53976 1.56570 1.38632 1.20942 0.85739 0.94751 0.97331 0.87507 1.23765 0.99856 1.03316 0.97400 1.87193 1.43057 1.54516 1.15041 1.23614 0.97925 1.00942 1.03017 1.19196 0.88057 0.80355 0.81151 1.90816 1.19823 1.66678 1.65536 1.44617 1.19959 1.27381 1.42122 0.92785 0.92330 0.89703 0.90310 0.91355 0.92686 0.91632 0.94124 0.95137 0.92495 0.87575 0.84631 0.85840 0.84081 0.75485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 8.44 37.16 0.31 -1.93 16 2 C 0.12 1.65 2.57 -67.93 -0.17 1.48 16 3 C -0.16 -1.91 9.17 37.16 0.34 -1.57 16 4 N -0.58 -10.16 2.39 -167.47 -0.40 -10.56 16 5 C 0.21 4.72 3.66 -5.19 -0.02 4.70 16 6 C -0.53 -13.72 8.38 -34.44 -0.29 -14.00 16 7 H 0.08 2.19 7.87 -52.49 -0.41 1.78 16 8 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 9 N -0.89 -26.21 13.96 55.43 0.77 -25.44 16 10 Si 0.87 20.46 27.47 -169.99 -4.67 15.79 16 11 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 14 C 0.50 8.82 6.72 -10.99 -0.07 8.74 16 15 O -0.52 -11.65 15.85 5.55 0.09 -11.57 16 16 C 0.12 1.61 2.55 -70.20 -0.18 1.43 16 17 H 0.11 1.14 6.50 -51.93 -0.34 0.81 16 18 C -0.09 -1.12 5.66 37.06 0.21 -0.91 16 19 S -0.23 -2.38 22.40 -107.50 -2.41 -4.79 16 20 C -0.10 -1.10 6.61 35.74 0.24 -0.86 16 21 C 0.53 7.35 7.65 -12.57 -0.10 7.26 16 22 O -0.55 -9.45 17.60 5.55 0.10 -9.35 16 23 N -0.69 -9.58 4.63 -57.16 -0.26 -9.84 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.88 7.83 -51.93 -0.41 0.48 16 26 H 0.08 1.47 6.92 -51.93 -0.36 1.11 16 27 H 0.08 0.83 4.66 -51.93 -0.24 0.58 16 28 H 0.07 0.91 6.66 -51.93 -0.35 0.56 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.04 0.99 6.48 -51.93 -0.34 0.66 16 32 H 0.03 0.63 5.85 -51.93 -0.30 0.33 16 33 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.11 1.41 8.13 -51.93 -0.42 0.99 16 35 H 0.14 1.46 6.60 -51.93 -0.34 1.11 16 36 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.14 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.41 6.06 7.91 -40.82 -0.32 5.74 16 LS Contribution 316.39 15.07 4.77 4.77 Total: -1.00 -32.42 316.39 -6.96 -39.38 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -5.11 Total: 5.36 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 0.17 Total: 6.25 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.11 Total: -45.84 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: 0.19 Total: -20.92 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.67 Total: 15.79 kcal Atomic # 16 Polarization: -2.38 SS G_CDS: -2.41 Total: -4.79 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.42 -6.96 -39.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931326319.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.011 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds