Wall clock time and date at job start Tue Mar 31 2020 06:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 N 1.46492 * 109.47363 * 120.00161 * 2 1 3 5 5 C 1.46499 * 120.00171 * 300.00256 * 4 2 1 6 6 C 1.50702 * 109.47038 * 89.99815 * 5 4 2 7 7 H 1.07992 * 120.00467 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99865 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00012 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00200 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47221 * 89.99570 * 10 8 6 12 12 H 1.48495 * 109.47011 * 210.00218 * 10 8 6 13 13 H 1.48507 * 109.46833 * 329.99719 * 10 8 6 14 14 C 1.34779 * 119.99992 * 120.00099 * 4 2 1 15 15 O 1.21283 * 119.99789 * 180.02562 * 14 4 2 16 16 C 1.50697 * 120.00035 * 359.97438 * 14 4 2 17 17 H 1.08999 * 108.86384 * 38.59290 * 16 14 4 18 18 C 1.52819 * 108.89056 * 280.00171 * 16 14 4 19 19 S 1.82058 * 108.21874 * 187.42156 * 18 16 14 20 20 C 1.81853 * 101.23552 * 61.40944 * 19 18 16 21 21 C 1.50142 * 109.06286 * 315.90361 * 20 19 18 22 22 O 1.21284 * 116.82743 * 200.59846 * 21 20 19 23 23 N 1.31770 * 126.34308 * 20.57858 * 21 20 19 24 24 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 27 27 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 28 28 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 29 29 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 31 31 H 1.08994 * 109.47510 * 209.99690 * 5 4 2 32 32 H 1.09004 * 109.47127 * 330.00276 * 5 4 2 33 33 H 0.97000 * 120.00398 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.71511 * 307.10191 * 18 16 14 35 35 H 1.08999 * 109.71303 * 67.74066 * 18 16 14 36 36 H 1.08996 * 109.53598 * 75.78459 * 20 19 18 37 37 H 1.08999 * 109.53621 * 196.03239 * 20 19 18 38 38 H 0.97003 * 115.07750 * 173.50364 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6645 -0.1902 2.5267 6 6 0.3831 -0.8390 2.9829 7 1 -0.1174 -1.5529 2.3457 8 6 -0.1504 -0.5210 4.2139 9 7 -1.2689 -1.0868 4.6119 10 14 0.7149 0.7145 5.3160 11 1 0.2096 2.0794 5.0216 12 1 0.4456 0.3829 6.7381 13 1 2.1775 0.6631 5.0641 14 6 2.7933 -1.7864 1.0723 15 8 3.1972 -2.3584 2.0626 16 6 3.1569 -2.3015 -0.2964 17 1 3.3443 -1.4527 -0.9541 18 6 1.9820 -3.1066 -0.8502 19 16 2.5165 -3.9024 -2.3979 20 6 3.8712 -4.9598 -1.8032 21 6 4.7239 -4.1742 -0.8492 22 8 5.8522 -4.5784 -0.6634 23 7 4.3658 -3.0882 -0.1945 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 2.4629 -0.4294 3.2291 32 1 1.5295 0.8906 2.4843 33 1 -1.6441 -0.8634 5.4781 34 1 1.6853 -3.8680 -0.1287 35 1 1.1420 -2.4413 -1.0499 36 1 3.4576 -5.8289 -1.2917 37 1 4.4765 -5.2867 -2.6487 38 1 5.0115 -2.7677 0.4545 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931326319.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:03 Heat of formation + Delta-G solvation = -81.124375 kcal Electronic energy + Delta-G solvation = -21631.184820 eV Core-core repulsion = 18406.463519 eV Total energy + Delta-G solvation = -3224.721302 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.91645 -40.64384 -37.85311 -36.86555 -34.84772 -32.64962 -32.21140 -31.14988 -29.88155 -27.96340 -26.32906 -24.34726 -22.89827 -21.37618 -20.17584 -19.11021 -18.89610 -18.43994 -17.84357 -17.28692 -16.76385 -16.55217 -16.16555 -15.78362 -15.38114 -15.07808 -14.89074 -14.51777 -14.51474 -14.18848 -13.86332 -13.63538 -13.51249 -13.27228 -12.98742 -12.83696 -12.66623 -12.41125 -12.20546 -12.00321 -11.95962 -11.78994 -11.55208 -11.35955 -10.83805 -10.77797 -10.27291 -9.52290 -8.91002 -8.30019 -6.32114 0.29571 0.88812 1.31150 1.35410 1.38660 1.44681 1.54117 1.75563 2.25971 2.32082 3.03540 3.05265 3.26282 3.39086 3.63353 3.95082 4.03414 4.17228 4.24992 4.33011 4.34657 4.54380 4.70007 4.90530 4.91241 4.92998 5.06058 5.10293 5.29709 5.40767 5.48210 5.58724 5.63939 6.06973 6.25711 6.54784 6.69701 6.79661 7.13629 7.32095 8.86010 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.021357 B = 0.005246 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.715409 B = 5336.612019 C = 5674.473534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.118 3.882 3 C -0.161 4.161 4 N -0.578 5.578 5 C 0.224 3.776 6 C -0.517 4.517 7 H 0.041 0.959 8 C 0.014 3.986 9 N -0.944 5.944 10 Si 0.933 3.067 11 H -0.253 1.253 12 H -0.289 1.289 13 H -0.258 1.258 14 C 0.493 3.507 15 O -0.579 6.579 16 C 0.139 3.861 17 H 0.144 0.856 18 C -0.102 4.102 19 S -0.188 6.188 20 C -0.105 4.105 21 C 0.526 3.474 22 O -0.587 6.587 23 N -0.692 5.692 24 H 0.093 0.907 25 H 0.041 0.959 26 H 0.046 0.954 27 H 0.117 0.883 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.017 0.983 32 H 0.051 0.949 33 H 0.265 0.735 34 H 0.086 0.914 35 H 0.150 0.850 36 H 0.136 0.864 37 H 0.163 0.837 38 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.343 2.293 -17.468 18.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.016 3.984 3 C -0.219 4.219 4 N -0.309 5.309 5 C 0.101 3.899 6 C -0.555 4.555 7 H 0.059 0.941 8 C -0.184 4.184 9 N -0.585 5.585 10 Si 0.757 3.243 11 H -0.177 1.177 12 H -0.215 1.215 13 H -0.182 1.182 14 C 0.278 3.722 15 O -0.459 6.459 16 C 0.028 3.972 17 H 0.161 0.839 18 C -0.250 4.250 19 S 0.040 5.960 20 C -0.255 4.255 21 C 0.312 3.688 22 O -0.469 6.469 23 N -0.341 5.341 24 H 0.111 0.889 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.135 0.865 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.117 0.883 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.168 0.832 36 H 0.154 0.846 37 H 0.181 0.819 38 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 6.363 1.832 -18.014 19.192 hybrid contribution 0.394 0.138 2.909 2.939 sum 6.757 1.970 -15.104 16.664 Atomic orbital electron populations 1.22119 0.94434 1.01868 1.02847 1.21632 0.95318 0.94814 0.86628 1.22178 1.01653 0.94532 1.03542 1.48097 1.47710 1.26673 1.08394 1.19332 0.94331 0.95188 0.81010 1.21473 1.06916 1.24699 1.02456 0.94056 1.25698 0.95364 0.98265 0.99103 1.70028 1.21542 1.45352 1.21535 0.85921 0.79958 0.80197 0.78191 1.17737 1.21453 1.18181 1.21029 0.79354 0.80741 0.91107 1.90717 1.56036 1.58107 1.41035 1.20981 0.85854 0.95831 0.94495 0.83901 1.23752 0.99756 1.03271 0.98264 1.87133 1.42242 1.54059 1.12572 1.23693 0.97914 1.00769 1.03127 1.19779 0.87958 0.79891 0.81150 1.90799 1.21629 1.67443 1.66981 1.44734 1.19923 1.27628 1.41863 0.88874 0.94003 0.93516 0.86531 0.93350 0.91724 0.88284 0.96536 0.93114 0.92572 0.89530 0.83220 0.84576 0.81907 0.76320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.13 8.44 71.98 0.61 -3.52 16 2 C 0.12 2.81 2.57 44.99 0.12 2.93 16 3 C -0.16 -3.18 9.17 71.98 0.66 -2.52 16 4 N -0.58 -20.00 2.39 -802.15 -1.91 -21.92 16 5 C 0.22 9.88 3.66 85.63 0.31 10.20 16 6 C -0.52 -27.83 8.38 25.60 0.21 -27.61 16 7 H 0.04 2.46 7.87 -2.91 -0.02 2.44 16 8 C 0.01 0.76 5.47 84.66 0.46 1.23 16 9 N -0.94 -57.35 13.96 21.45 0.30 -57.05 16 10 Si 0.93 42.73 27.47 68.60 1.88 44.62 16 11 H -0.25 -10.63 7.11 99.48 0.71 -9.93 16 12 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 13 H -0.26 -11.41 6.54 99.48 0.65 -10.76 16 14 C 0.49 17.30 6.72 87.66 0.59 17.88 16 15 O -0.58 -26.57 15.85 -3.04 -0.05 -26.62 16 16 C 0.14 3.35 2.55 44.54 0.11 3.46 16 17 H 0.14 2.46 6.50 -2.39 -0.02 2.45 16 18 C -0.10 -2.20 5.66 71.92 0.41 -1.79 16 19 S -0.19 -3.34 22.40 -56.49 -1.27 -4.61 16 20 C -0.10 -1.94 6.61 71.06 0.47 -1.47 16 21 C 0.53 13.96 7.65 87.94 0.67 14.63 16 22 O -0.59 -19.87 17.60 -3.04 -0.05 -19.92 16 23 N -0.69 -18.47 4.63 -454.81 -2.11 -20.58 16 24 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.04 1.23 7.83 -2.39 -0.02 1.21 16 26 H 0.05 1.61 6.92 -2.39 -0.02 1.59 16 27 H 0.12 1.91 4.66 -2.39 -0.01 1.90 16 28 H 0.05 1.16 6.66 -2.39 -0.02 1.14 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 30 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.02 0.82 6.48 -2.39 -0.02 0.80 16 32 H 0.05 2.06 5.85 -2.39 -0.01 2.05 16 33 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 34 H 0.09 2.25 8.13 -2.39 -0.02 2.23 16 35 H 0.15 2.81 6.60 -2.39 -0.02 2.79 16 36 H 0.14 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.16 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.40 11.86 7.91 -92.71 -0.73 11.13 16 Total: -1.00 -74.83 316.39 1.72 -73.11 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.30 Total: 19.55 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 4.63 Total: 13.41 kcal Atomic # 7 Polarization: -95.82 SS G_CDS: -3.72 Total: -99.54 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: -0.10 Total: -46.54 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.88 Total: 44.62 kcal Atomic # 16 Polarization: -3.34 SS G_CDS: -1.27 Total: -4.61 kcal Total: -74.83 1.72 -73.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931326319.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.018 kcal (2) G-P(sol) polarization free energy of solvation -74.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds