Wall clock time and date at job start Tue Mar 31 2020 05:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99626 * 2 1 4 4 H 1.48493 * 109.47341 * 269.99793 * 3 2 1 5 5 H 1.48499 * 109.47066 * 30.00129 * 3 2 1 6 6 H 1.48500 * 109.46754 * 149.99481 * 3 2 1 7 7 C 1.37871 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99864 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99975 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47239 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47239 * 180.02562 * 10 9 7 12 12 O 1.21290 * 119.99984 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99818 * 179.97438 * 11 10 9 14 14 C 1.39963 * 119.99637 * 185.52420 * 13 11 10 15 15 C 1.38754 * 120.10323 * 25.07607 * 14 13 11 16 16 C 1.38160 * 119.99445 * 179.69491 * 15 14 13 17 17 C 1.38322 * 120.19323 * 0.57628 * 16 15 14 18 18 C 1.38174 * 120.19976 * 359.72667 * 17 16 15 19 19 C 1.38697 * 120.00693 * 359.97171 * 18 17 16 20 20 N 1.40288 * 120.09777 * 180.02562 * 19 18 17 21 21 C 1.36094 * 125.94355 * 4.92278 * 20 19 18 22 22 C 1.35394 * 106.04951 * 179.90673 * 21 20 19 23 23 N 1.33760 * 106.53252 * 0.34834 * 22 21 20 24 24 N 1.28597 * 109.06512 * 359.77855 * 23 22 21 25 25 H 0.97002 * 120.00369 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47303 * 60.00803 * 9 7 2 27 27 H 1.09000 * 109.47888 * 300.00379 * 9 7 2 28 28 H 1.09004 * 109.46619 * 60.00067 * 10 9 7 29 29 H 1.09000 * 109.47109 * 300.01002 * 10 9 7 30 30 H 0.97002 * 119.99818 * 5.52976 * 13 11 10 31 31 H 1.07999 * 120.00673 * 359.97438 * 15 14 13 32 32 H 1.08002 * 119.90655 * 180.28185 * 16 15 14 33 33 H 1.08007 * 119.89946 * 179.74097 * 17 16 15 34 34 H 1.08000 * 119.99950 * 179.97438 * 18 17 16 35 35 H 1.07996 * 126.97364 * 0.03522 * 21 20 19 36 36 H 1.08002 * 126.73175 * 180.09158 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5465 1.4403 0.7002 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4919 -4.9671 -0.0025 12 8 0.2790 -4.9671 -0.0024 13 7 2.1659 -6.1343 -0.0041 14 6 1.4709 -7.3435 -0.1214 15 6 0.2278 -7.3748 -0.7372 16 6 -0.4535 -8.5707 -0.8573 17 6 0.0945 -9.7371 -0.3547 18 6 1.3290 -9.7141 0.2656 19 6 2.0230 -8.5192 0.3852 20 7 3.2767 -8.4937 1.0141 21 6 3.9665 -9.5769 1.4649 22 6 5.1154 -9.0950 1.9950 23 7 5.0716 -7.7656 1.8534 24 7 3.9724 -7.4412 1.2702 25 1 -0.4851 0.8400 -0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.8727 -3.6046 0.8878 29 1 2.8715 -3.6038 -0.8922 30 1 3.1326 -6.1362 0.0760 31 1 -0.2051 -6.4652 -1.1265 32 1 -1.4189 -8.5942 -1.3409 33 1 -0.4441 -10.6686 -0.4475 34 1 1.7536 -10.6266 0.6572 35 1 3.6605 -10.6111 1.4090 36 1 5.9093 -9.6706 2.4475 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361679322.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:17 Heat of formation + Delta-G solvation = 102.966884 kcal Electronic energy + Delta-G solvation = -21525.550312 eV Core-core repulsion = 18205.660607 eV Total energy + Delta-G solvation = -3319.889706 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.117 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.69503 -40.50243 -38.61194 -35.05872 -34.49123 -33.51388 -31.50656 -31.20066 -30.30595 -29.42722 -25.86410 -24.41355 -23.99138 -22.32206 -21.75947 -21.21888 -19.70563 -18.82423 -17.38617 -17.07459 -16.67597 -15.95037 -15.54164 -15.43447 -15.20834 -14.81832 -14.44523 -14.23178 -13.97246 -13.46512 -13.37916 -12.46734 -12.28295 -12.17802 -11.95224 -11.86250 -11.24136 -11.22181 -11.17171 -10.93159 -10.60673 -10.51998 -9.99182 -9.75190 -9.70404 -9.28561 -9.09960 -8.94233 -8.33220 -8.11350 -5.96739 -4.00960 0.37516 1.03073 1.74069 2.00211 2.29840 2.93491 3.18199 3.34628 3.40813 3.44379 3.56543 4.05712 4.21770 4.47966 4.61576 4.72534 4.77062 4.91579 4.98813 5.09019 5.28819 5.38678 5.41184 5.64671 5.79584 5.90804 6.04529 6.15426 6.17941 6.20896 6.34254 6.48321 6.81345 6.83535 7.61110 7.72705 7.81580 8.04211 8.18948 8.33721 8.50058 9.06516 9.62853 11.14245 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.020399 B = 0.003864 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.312979 B = 7245.131400 C = 8530.580526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.512 3.488 12 O -0.512 6.512 13 N -0.675 5.675 14 C 0.193 3.807 15 C -0.123 4.123 16 C -0.081 4.081 17 C -0.132 4.132 18 C -0.093 4.093 19 C 0.061 3.939 20 N -0.228 5.228 21 C -0.049 4.049 22 C -0.045 4.045 23 N -0.259 5.259 24 N -0.094 5.094 25 H 0.261 0.739 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.421 0.579 31 H 0.163 0.837 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.194 0.806 36 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.672 -25.289 -0.317 25.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.075 0.925 9 C 0.000 4.000 10 C -0.169 4.169 11 C 0.303 3.697 12 O -0.385 6.385 13 N -0.324 5.324 14 C 0.093 3.907 15 C -0.143 4.143 16 C -0.100 4.100 17 C -0.152 4.152 18 C -0.114 4.114 19 C -0.033 4.033 20 N -0.015 5.015 21 C -0.198 4.198 22 C -0.202 4.202 23 N -0.124 5.124 24 N -0.073 5.073 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.265 0.735 31 H 0.180 0.820 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.211 0.789 36 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 3.844 -23.460 -0.389 23.776 hybrid contribution 0.856 -0.457 0.227 0.997 sum 4.700 -23.917 -0.161 24.375 Atomic orbital electron populations 1.69991 1.06063 1.26630 1.50209 1.25009 0.94829 0.99246 0.95212 0.86576 0.79838 0.83395 0.78081 1.20654 1.21217 1.19801 1.21203 0.93045 0.90863 1.51443 0.92452 1.18928 0.93083 0.89285 0.98711 1.21946 1.00915 0.90747 1.03293 1.21972 0.88734 0.85482 0.73508 1.90621 1.14320 1.87240 1.46352 1.44574 1.12419 1.03683 1.71706 1.17707 0.93569 0.84641 0.94816 1.21595 0.93410 1.00555 0.98777 1.21313 0.99831 0.91595 0.97292 1.20935 0.94915 0.99075 1.00275 1.20637 0.95337 0.94962 1.00491 1.17453 0.85061 0.95869 1.04904 1.44699 1.14074 1.05815 1.36879 1.23811 0.94999 0.95240 1.05774 1.23662 0.99271 0.91810 1.05421 1.75133 1.10726 1.13348 1.13176 1.77886 1.00905 1.11161 1.17336 0.92940 0.95695 0.95670 0.89450 0.89586 0.73535 0.81975 0.84610 0.84677 0.84749 0.78930 0.78764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.41 13.29 55.43 0.74 -26.67 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.53 -15.07 9.11 -34.44 -0.31 -15.38 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 10 C -0.13 -2.71 5.64 -27.88 -0.16 -2.86 16 11 C 0.51 10.13 7.63 -10.99 -0.08 10.04 16 12 O -0.51 -11.46 13.16 5.55 0.07 -11.39 16 13 N -0.67 -11.15 4.89 -9.75 -0.05 -11.20 16 14 C 0.19 2.85 6.44 -83.52 -0.54 2.32 16 15 C -0.12 -1.71 8.71 -39.42 -0.34 -2.05 16 16 C -0.08 -0.82 10.04 -39.58 -0.40 -1.22 16 17 C -0.13 -1.07 10.04 -39.57 -0.40 -1.47 16 18 C -0.09 -0.82 9.45 -39.44 -0.37 -1.19 16 19 C 0.06 0.75 6.69 -83.38 -0.56 0.20 16 20 N -0.23 -2.83 3.56 -10.35 -0.04 -2.87 16 21 C -0.05 -0.43 10.91 -16.68 -0.18 -0.61 16 22 C -0.04 -0.43 12.05 -17.73 -0.21 -0.65 16 23 N -0.26 -3.64 12.39 30.24 0.37 -3.26 16 24 N -0.09 -1.41 9.84 60.35 0.59 -0.81 16 25 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.02 0.72 8.10 -51.93 -0.42 0.29 16 27 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 28 H 0.09 1.74 8.14 -51.93 -0.42 1.31 16 29 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 30 H 0.42 6.62 5.99 -40.82 -0.24 6.37 16 31 H 0.16 2.62 5.80 -52.49 -0.30 2.32 16 32 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 34 H 0.13 0.71 6.79 -52.49 -0.36 0.35 16 35 H 0.19 0.79 7.13 -52.49 -0.37 0.42 16 36 H 0.20 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 312.85 15.07 4.71 4.71 Total: -1.00 -35.38 312.85 -6.16 -41.54 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -3.78 Total: 3.47 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -3.77 Total: -10.37 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 1.62 Total: -44.81 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.07 Total: -11.39 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.38 -6.16 -41.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361679322.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.506 kcal (2) G-P(sol) polarization free energy of solvation -35.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds