Wall clock time and date at job start Tue Mar 31 2020 05:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99626 * 2 1 4 4 H 1.48493 * 109.47341 * 269.99793 * 3 2 1 5 5 H 1.48499 * 109.47066 * 30.00129 * 3 2 1 6 6 H 1.48500 * 109.46754 * 149.99481 * 3 2 1 7 7 C 1.37871 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99864 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99975 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47239 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47239 * 180.02562 * 10 9 7 12 12 O 1.21290 * 119.99984 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99818 * 179.97438 * 11 10 9 14 14 C 1.39963 * 119.99637 * 185.52420 * 13 11 10 15 15 C 1.38754 * 120.10323 * 25.07607 * 14 13 11 16 16 C 1.38160 * 119.99445 * 179.69491 * 15 14 13 17 17 C 1.38322 * 120.19323 * 0.57628 * 16 15 14 18 18 C 1.38174 * 120.19976 * 359.72667 * 17 16 15 19 19 C 1.38697 * 120.00693 * 359.97171 * 18 17 16 20 20 N 1.40288 * 120.09777 * 180.02562 * 19 18 17 21 21 C 1.36094 * 125.94355 * 4.92278 * 20 19 18 22 22 C 1.35394 * 106.04951 * 179.90673 * 21 20 19 23 23 N 1.33760 * 106.53252 * 0.34834 * 22 21 20 24 24 N 1.28597 * 109.06512 * 359.77855 * 23 22 21 25 25 H 0.97002 * 120.00369 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47303 * 60.00803 * 9 7 2 27 27 H 1.09000 * 109.47888 * 300.00379 * 9 7 2 28 28 H 1.09004 * 109.46619 * 60.00067 * 10 9 7 29 29 H 1.09000 * 109.47109 * 300.01002 * 10 9 7 30 30 H 0.97002 * 119.99818 * 5.52976 * 13 11 10 31 31 H 1.07999 * 120.00673 * 359.97438 * 15 14 13 32 32 H 1.08002 * 119.90655 * 180.28185 * 16 15 14 33 33 H 1.08007 * 119.89946 * 179.74097 * 17 16 15 34 34 H 1.08000 * 119.99950 * 179.97438 * 18 17 16 35 35 H 1.07996 * 126.97364 * 0.03522 * 21 20 19 36 36 H 1.08002 * 126.73175 * 180.09158 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5465 1.4403 0.7002 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4919 -4.9671 -0.0025 12 8 0.2790 -4.9671 -0.0024 13 7 2.1659 -6.1343 -0.0041 14 6 1.4709 -7.3435 -0.1214 15 6 0.2278 -7.3748 -0.7372 16 6 -0.4535 -8.5707 -0.8573 17 6 0.0945 -9.7371 -0.3547 18 6 1.3290 -9.7141 0.2656 19 6 2.0230 -8.5192 0.3852 20 7 3.2767 -8.4937 1.0141 21 6 3.9665 -9.5769 1.4649 22 6 5.1154 -9.0950 1.9950 23 7 5.0716 -7.7656 1.8534 24 7 3.9724 -7.4412 1.2702 25 1 -0.4851 0.8400 -0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.8727 -3.6046 0.8878 29 1 2.8715 -3.6038 -0.8922 30 1 3.1326 -6.1362 0.0760 31 1 -0.2051 -6.4652 -1.1265 32 1 -1.4189 -8.5942 -1.3409 33 1 -0.4441 -10.6686 -0.4475 34 1 1.7536 -10.6266 0.6572 35 1 3.6605 -10.6111 1.4090 36 1 5.9093 -9.6706 2.4475 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361679322.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:17 Heat of formation + Delta-G solvation = 78.269943 kcal Electronic energy + Delta-G solvation = -21526.621252 eV Core-core repulsion = 18205.660607 eV Total energy + Delta-G solvation = -3320.960646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.117 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.52233 -41.71624 -39.78561 -36.12547 -35.71869 -35.46263 -33.21225 -32.21751 -31.21757 -30.52692 -27.79117 -25.26188 -25.13940 -23.75648 -22.71663 -22.37759 -21.22137 -19.67425 -18.89333 -18.39957 -17.76756 -17.49837 -16.81586 -16.53776 -16.31953 -16.12015 -15.78946 -15.25412 -15.05448 -14.69220 -14.64358 -14.20938 -13.98748 -13.34813 -13.05946 -12.86382 -12.79924 -12.68088 -12.51898 -12.12073 -12.04710 -12.00874 -11.71106 -11.67802 -11.34643 -10.79422 -10.59321 -10.50842 -9.83305 -9.16390 -8.21220 -6.35218 -0.46330 0.14575 0.94104 1.22028 1.40246 1.43059 1.49376 1.52502 1.54283 1.93813 2.41301 2.65996 3.11781 3.27032 3.54016 3.73103 3.90675 4.08734 4.10409 4.24504 4.27509 4.32537 4.40289 4.43628 4.62267 4.69223 4.94017 5.06689 5.14789 5.25455 5.32970 5.43279 5.45670 5.55007 5.55567 5.79544 5.90042 6.13468 6.28148 6.80601 7.00321 7.34733 7.35992 8.91410 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.020399 B = 0.003864 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.312979 B = 7245.131400 C = 8530.580526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.974 3.026 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.547 4.547 8 H 0.072 0.928 9 C 0.046 3.954 10 C -0.120 4.120 11 C 0.514 3.486 12 O -0.551 6.551 13 N -0.664 5.664 14 C 0.147 3.853 15 C -0.149 4.149 16 C -0.080 4.080 17 C -0.110 4.110 18 C -0.079 4.079 19 C 0.056 3.944 20 N -0.238 5.238 21 C -0.028 4.028 22 C -0.051 4.051 23 N -0.296 5.296 24 N -0.148 5.148 25 H 0.264 0.736 26 H -0.009 1.009 27 H -0.014 1.014 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.424 0.576 31 H 0.126 0.874 32 H 0.158 0.842 33 H 0.184 0.816 34 H 0.184 0.816 35 H 0.248 0.752 36 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.092 -28.941 -0.010 29.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.797 3.203 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.183 1.183 7 C -0.585 4.585 8 H 0.090 0.910 9 C 0.009 3.991 10 C -0.159 4.159 11 C 0.304 3.696 12 O -0.428 6.428 13 N -0.313 5.313 14 C 0.049 3.951 15 C -0.170 4.170 16 C -0.099 4.099 17 C -0.129 4.129 18 C -0.099 4.099 19 C -0.037 4.037 20 N -0.025 5.025 21 C -0.177 4.177 22 C -0.208 4.208 23 N -0.161 5.161 24 N -0.125 5.125 25 H 0.073 0.927 26 H 0.009 0.991 27 H 0.004 0.996 28 H 0.117 0.883 29 H 0.124 0.876 30 H 0.268 0.732 31 H 0.144 0.856 32 H 0.176 0.824 33 H 0.201 0.799 34 H 0.201 0.799 35 H 0.264 0.736 36 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 5.299 -27.152 -0.088 27.664 hybrid contribution 0.385 0.409 0.145 0.580 sum 5.684 -26.742 0.057 27.340 Atomic orbital electron populations 1.70158 1.08169 1.27910 1.51198 1.26091 0.95758 1.03784 0.94426 0.85321 0.78595 0.77717 0.78631 1.19488 1.20861 1.18292 1.21665 0.93914 0.91649 1.51270 0.90984 1.18675 0.93436 0.91854 0.95169 1.21683 0.99651 0.89789 1.04794 1.21560 0.88084 0.86280 0.73656 1.90608 1.15651 1.87878 1.48683 1.44196 1.12399 1.03676 1.71064 1.17980 0.94540 0.84729 0.97838 1.21450 0.94076 1.01066 1.00445 1.21631 1.00392 0.90951 0.96968 1.21501 0.94390 0.99704 0.97272 1.21261 0.94859 0.95021 0.98786 1.17754 0.85362 0.96031 1.04590 1.44870 1.14123 1.06485 1.37011 1.24729 0.93686 0.96412 1.02876 1.24429 1.00730 0.90513 1.05134 1.75071 1.11005 1.16064 1.13932 1.77838 1.02012 1.12858 1.19834 0.92715 0.99094 0.99582 0.88299 0.87619 0.73182 0.85617 0.82445 0.79913 0.79897 0.73619 0.75137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.96 13.29 21.44 0.28 -59.67 16 2 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 3 Si 0.97 45.53 29.54 68.60 2.03 47.56 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.55 -32.35 9.11 25.60 0.23 -32.12 16 8 H 0.07 3.95 7.74 -2.91 -0.02 3.93 16 9 C 0.05 2.67 4.26 29.85 0.13 2.80 16 10 C -0.12 -5.33 5.64 29.85 0.17 -5.17 16 11 C 0.51 22.08 7.63 87.65 0.67 22.75 16 12 O -0.55 -27.23 13.16 -3.06 -0.04 -27.27 16 13 N -0.66 -23.46 4.89 -303.15 -1.48 -24.95 16 14 C 0.15 4.50 6.44 38.25 0.25 4.74 16 15 C -0.15 -4.38 8.71 22.37 0.19 -4.19 16 16 C -0.08 -1.49 10.04 22.27 0.22 -1.26 16 17 C -0.11 -1.25 10.04 22.27 0.22 -1.02 16 18 C -0.08 -0.99 9.45 22.36 0.21 -0.78 16 19 C 0.06 1.28 6.69 38.18 0.26 1.54 16 20 N -0.24 -5.47 3.56 -186.66 -0.66 -6.13 16 21 C -0.03 -0.38 10.91 83.37 0.91 0.53 16 22 C -0.05 -0.83 12.05 83.74 1.01 0.17 16 23 N -0.30 -8.19 12.39 -58.24 -0.72 -8.91 16 24 N -0.15 -4.43 9.84 37.02 0.36 -4.07 16 25 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 26 H -0.01 -0.59 8.10 -2.39 -0.02 -0.61 16 27 H -0.01 -0.92 8.10 -2.39 -0.02 -0.94 16 28 H 0.10 4.13 8.14 -2.38 -0.02 4.12 16 29 H 0.11 4.22 8.14 -2.39 -0.02 4.21 16 30 H 0.42 14.18 5.99 -92.71 -0.56 13.63 16 31 H 0.13 4.57 5.80 -2.91 -0.02 4.56 16 32 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 33 H 0.18 0.47 8.06 -2.91 -0.02 0.44 16 34 H 0.18 0.50 6.79 -2.91 -0.02 0.48 16 35 H 0.25 0.23 7.13 -2.91 -0.02 0.21 16 36 H 0.23 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -86.01 312.85 5.27 -80.74 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.57 Total: 14.40 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 4.93 Total: -11.70 kcal Atomic # 7 Polarization: -101.51 SS G_CDS: -2.22 Total: -103.73 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.04 Total: -27.27 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -86.01 5.27 -80.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361679322.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.012 kcal (2) G-P(sol) polarization free energy of solvation -86.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds