Wall clock time and date at job start Tue Mar 31 2020 05:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00003 * 2 1 4 4 H 1.48499 * 109.47237 * 240.00431 * 3 2 1 5 5 H 1.48506 * 109.46974 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46949 * 120.00606 * 3 2 1 7 7 C 1.38811 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99783 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99949 * 359.97438 * 7 2 1 10 10 C 1.47585 * 134.49212 * 180.02562 * 9 7 2 11 11 C 1.53945 * 86.11755 * 155.35638 * 10 9 7 12 12 N 1.46498 * 113.74502 * 137.95678 * 11 10 9 13 13 C 1.34776 * 120.00471 * 156.92403 * 12 11 10 14 14 O 1.21631 * 119.99718 * 359.97438 * 13 12 11 15 15 C 1.47219 * 120.00223 * 179.97438 * 13 12 11 16 16 C 1.38948 * 120.85826 * 0.02562 * 15 13 12 17 17 C 1.39740 * 119.29118 * 179.69654 * 16 15 13 18 18 C 1.35112 * 121.14774 * 0.30024 * 17 16 15 19 19 N 1.36147 * 121.71557 * 359.95904 * 18 17 16 20 20 C 1.37010 * 132.64237 * 180.02562 * 19 18 17 21 21 C 1.34955 * 107.14929 * 180.02562 * 20 19 18 22 22 N 1.33741 * 108.60983 * 359.97438 * 21 20 19 23 23 C 1.31980 * 109.16604 * 0.02562 * 22 21 20 24 24 C 1.47814 * 134.46005 * 359.86306 * 9 7 2 25 25 H 0.97005 * 119.99721 * 359.97438 * 1 2 3 26 26 H 1.09003 * 113.77164 * 41.05502 * 10 9 7 27 27 H 1.09003 * 113.76688 * 269.65607 * 10 9 7 28 28 H 1.09010 * 113.73961 * 269.15162 * 11 10 9 29 29 H 0.97001 * 119.99390 * 336.91899 * 12 11 10 30 30 H 1.08002 * 120.35719 * 359.97438 * 16 15 13 31 31 H 1.08001 * 119.42803 * 180.27333 * 17 16 15 32 32 H 1.08000 * 119.14227 * 179.97438 * 18 17 16 33 33 H 1.07994 * 126.42224 * 359.97438 * 20 19 18 34 34 H 1.08005 * 125.69523 * 180.02562 * 21 20 19 35 35 H 1.09003 * 113.76853 * 90.37934 * 24 9 7 36 36 H 1.09003 * 113.83552 * 318.92364 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 1.7201 -3.8101 -0.0005 11 6 0.3471 -4.0829 0.6399 12 7 -0.3333 -5.2613 0.0972 13 6 -1.2732 -5.8931 0.8279 14 8 -1.5562 -5.4851 1.9383 15 6 -1.9573 -7.0770 0.2823 16 6 -1.6477 -7.5586 -0.9837 17 6 -2.3128 -8.6887 -1.4668 18 6 -3.2539 -9.3152 -0.7271 19 7 -3.5953 -8.8779 0.5162 20 6 -4.4968 -9.3295 1.4439 21 6 -4.4173 -8.5057 2.5099 22 7 -3.4959 -7.5696 2.2581 23 6 -2.9861 -7.7751 1.0582 24 6 -0.1057 -2.7571 0.0025 25 1 -0.4850 0.8401 0.0004 26 1 2.5625 -4.0324 0.6546 27 1 1.8318 -4.2350 -0.9981 28 1 0.3596 -4.0639 1.7298 29 1 -0.1074 -5.5869 -0.7882 30 1 -0.8977 -7.0676 -1.5862 31 1 -2.0706 -9.0676 -2.4488 32 1 -3.7480 -10.1858 -1.1324 33 1 -5.1492 -10.1839 1.3409 34 1 -4.9998 -8.5891 3.4156 35 1 -0.5320 -2.8717 -0.9942 36 1 -0.7183 -2.1402 0.6600 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031096310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:13 Heat of formation + Delta-G solvation = 128.144345 kcal Electronic energy + Delta-G solvation = -21436.551723 eV Core-core repulsion = 18117.753793 eV Total energy + Delta-G solvation = -3318.797929 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.117 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.84075 -39.50508 -37.63405 -37.17686 -33.85720 -33.24398 -31.75732 -30.42469 -29.01500 -27.37068 -24.99425 -24.79940 -23.15515 -22.72203 -21.93749 -20.49893 -19.63646 -17.94553 -17.48580 -16.77315 -16.57706 -16.05219 -15.69377 -15.54041 -14.92640 -14.31354 -14.26692 -14.07197 -13.79355 -13.67462 -12.72324 -12.68150 -12.45214 -12.07815 -11.86196 -11.45048 -11.41545 -10.99836 -10.86270 -10.73594 -10.41302 -10.10583 -10.02763 -9.55926 -9.48323 -9.01484 -8.78647 -8.43601 -8.08239 -6.90332 -5.74968 -3.09286 0.13657 1.06685 2.29650 2.63004 2.95099 3.37408 3.43036 3.46631 3.47805 3.70933 3.93113 4.13421 4.40018 4.46899 4.57168 4.66996 5.05422 5.17957 5.24625 5.29325 5.46730 5.49842 5.60032 5.64804 5.69105 6.03847 6.12457 6.23698 6.42052 6.46034 6.57833 6.76619 6.80658 7.26182 7.38816 7.58934 7.82230 7.88278 7.98526 8.57183 9.04566 9.71088 10.57500 11.41554 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.035976 B = 0.003255 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.110396 B = 8601.305421 C = 8992.112668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.227 4.227 8 H 0.081 0.919 9 N -0.607 5.607 10 C 0.113 3.887 11 C 0.094 3.906 12 N -0.711 5.711 13 C 0.554 3.446 14 O -0.503 6.503 15 C -0.080 4.080 16 C -0.063 4.063 17 C -0.153 4.153 18 C 0.077 3.923 19 N -0.373 5.373 20 C -0.102 4.102 21 C 0.028 3.972 22 N -0.457 5.457 23 C 0.252 3.748 24 C 0.154 3.846 25 H 0.255 0.745 26 H 0.050 0.950 27 H 0.035 0.965 28 H 0.113 0.887 29 H 0.393 0.607 30 H 0.150 0.850 31 H 0.156 0.844 32 H 0.164 0.836 33 H 0.184 0.816 34 H 0.182 0.818 35 H 0.029 0.971 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.247 -23.217 -4.718 24.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.355 4.355 8 H 0.099 0.901 9 N -0.333 5.333 10 C -0.014 4.014 11 C -0.010 4.010 12 N -0.363 5.363 13 C 0.339 3.661 14 O -0.378 6.378 15 C -0.086 4.086 16 C -0.088 4.088 17 C -0.174 4.174 18 C -0.046 4.046 19 N -0.046 5.046 20 C -0.231 4.231 21 C -0.123 4.123 22 N -0.175 5.175 23 C 0.005 3.995 24 C 0.027 3.973 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.052 0.948 28 H 0.131 0.869 29 H 0.228 0.772 30 H 0.167 0.833 31 H 0.174 0.826 32 H 0.181 0.819 33 H 0.201 0.799 34 H 0.199 0.801 35 H 0.047 0.953 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.263 -21.944 -3.301 23.349 hybrid contribution 0.168 -0.072 -1.271 1.284 sum -7.095 -22.016 -4.572 23.578 Atomic orbital electron populations 1.69824 1.05039 1.25618 1.55919 1.24823 0.95688 0.97638 1.02116 0.86171 0.78449 0.83006 0.77922 1.21172 1.21519 1.20974 1.18927 0.90209 0.81617 1.44717 0.90092 1.45693 1.02419 0.99128 1.86086 1.22872 0.94630 0.86875 0.97009 1.23945 0.93186 0.83793 1.00105 1.46021 1.39718 1.31011 1.19550 1.17578 0.80378 0.82495 0.85686 1.90895 1.62703 1.65267 1.18885 1.20421 0.96793 0.97622 0.93736 1.21687 0.98369 0.95152 0.93548 1.20625 0.97886 0.97417 1.01474 1.21630 0.98671 1.00330 0.83920 1.42952 1.27359 1.21874 1.12455 1.22666 1.02143 1.06734 0.91603 1.22730 0.98213 0.92287 0.99028 1.70869 1.11060 1.24267 1.11285 1.21609 0.97816 0.88688 0.91358 1.22724 0.88123 0.89164 0.97246 0.93459 0.93158 0.94754 0.86941 0.77241 0.83255 0.82631 0.81915 0.79908 0.80104 0.95330 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.80 11.39 55.49 0.63 -27.17 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.23 -6.43 10.70 -15.06 -0.16 -6.59 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 9 N -0.61 -15.70 3.70 -177.87 -0.66 -16.36 16 10 C 0.11 2.26 8.69 -2.96 -0.03 2.23 16 11 C 0.09 1.88 4.40 -70.15 -0.31 1.57 16 12 N -0.71 -11.29 5.33 -56.49 -0.30 -11.59 16 13 C 0.55 9.78 7.77 -12.61 -0.10 9.68 16 14 O -0.50 -11.27 15.82 5.25 0.08 -11.19 16 15 C -0.08 -1.13 6.06 -102.64 -0.62 -1.75 16 16 C -0.06 -0.59 9.63 -38.76 -0.37 -0.96 16 17 C -0.15 -1.01 9.91 -40.13 -0.40 -1.41 16 18 C 0.08 0.56 10.88 -16.75 -0.18 0.38 16 19 N -0.37 -4.14 2.94 -61.10 -0.18 -4.32 16 20 C -0.10 -0.98 11.76 -16.40 -0.19 -1.17 16 21 C 0.03 0.34 11.83 -17.89 -0.21 0.13 16 22 N -0.46 -7.84 10.70 -11.32 -0.12 -7.96 16 23 C 0.25 3.86 7.67 -154.14 -1.18 2.68 16 24 C 0.15 3.74 7.32 -2.85 -0.02 3.72 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.04 0.62 8.11 -51.93 -0.42 0.20 16 28 H 0.11 2.46 7.51 -51.92 -0.39 2.07 16 29 H 0.39 4.75 6.81 -40.82 -0.28 4.47 16 30 H 0.15 0.97 6.48 -52.49 -0.34 0.63 16 31 H 0.16 0.44 8.06 -52.49 -0.42 0.02 16 32 H 0.16 0.52 8.06 -52.49 -0.42 0.09 16 33 H 0.18 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.18 1.60 8.06 -52.48 -0.42 1.17 16 35 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 2.17 7.17 -51.93 -0.37 1.80 16 LS Contribution 313.60 15.07 4.73 4.73 Total: -1.00 -38.50 313.60 -8.60 -47.10 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -3.88 Total: 1.18 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: -3.87 Total: 8.24 kcal Atomic # 7 Polarization: -66.76 SS G_CDS: -0.63 Total: -67.39 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.08 Total: -11.19 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -38.50 -8.60 -47.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031096310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.245 kcal (2) G-P(sol) polarization free energy of solvation -38.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds