Wall clock time and date at job start Tue Mar 31 2020 05:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99399 * 2 1 4 4 H 1.48499 * 109.47516 * 269.99899 * 3 2 1 5 5 H 1.48497 * 109.47341 * 29.99855 * 3 2 1 6 6 H 1.48501 * 109.47181 * 150.00022 * 3 2 1 7 7 C 1.38809 * 120.00571 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00001 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99876 * 359.97438 * 7 2 1 10 10 C 1.47584 * 134.49472 * 180.02562 * 9 7 2 11 11 C 1.53939 * 86.11858 * 155.36016 * 10 9 7 12 12 N 1.46504 * 113.73922 * 137.95013 * 11 10 9 13 13 C 1.34784 * 119.99847 * 156.92131 * 12 11 10 14 14 O 1.21595 * 119.99695 * 0.02562 * 13 12 11 15 15 C 1.47564 * 120.00017 * 180.02562 * 13 12 11 16 16 C 1.41756 * 120.01438 * 0.02562 * 15 13 12 17 17 C 1.35635 * 119.54360 * 179.97438 * 16 15 13 18 18 C 1.41173 * 119.50625 * 0.02562 * 17 16 15 19 19 N 1.32414 * 132.12192 * 179.97438 * 18 17 16 20 20 C 1.33597 * 109.22578 * 180.02562 * 19 18 17 21 21 C 1.34995 * 108.65851 * 359.97438 * 20 19 18 22 22 N 1.37005 * 107.14516 * 0.02562 * 21 20 19 23 23 C 1.35915 * 132.41637 * 179.97438 * 22 21 20 24 24 C 1.47815 * 134.45764 * 359.87523 * 9 7 2 25 25 H 0.96997 * 120.00272 * 0.02562 * 1 2 3 26 26 H 1.09001 * 113.76643 * 41.05528 * 10 9 7 27 27 H 1.09000 * 113.76661 * 269.66505 * 10 9 7 28 28 H 1.08995 * 113.74768 * 269.15416 * 11 10 9 29 29 H 0.96990 * 120.00350 * 336.93241 * 12 11 10 30 30 H 1.07994 * 120.23051 * 0.25858 * 16 15 13 31 31 H 1.08000 * 120.24243 * 179.97438 * 17 16 15 32 32 H 1.08000 * 125.66919 * 180.02562 * 20 19 18 33 33 H 1.08000 * 126.42644 * 180.02562 * 21 20 19 34 34 H 1.08004 * 119.75684 * 0.03188 * 23 22 21 35 35 H 1.08996 * 113.77130 * 90.37348 * 24 9 7 36 36 H 1.08999 * 113.83393 * 318.90871 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2019 -0.0001 9 7 1.3258 -2.3880 -0.0005 10 6 1.7205 -3.8101 -0.0005 11 6 0.3474 -4.0829 0.6398 12 7 -0.3328 -5.2614 0.0968 13 6 -1.2727 -5.8933 0.8275 14 8 -1.5563 -5.4850 1.9372 15 6 -1.9575 -7.0806 0.2808 16 6 -1.6267 -7.5572 -1.0126 17 6 -2.2618 -8.6496 -1.5055 18 6 -3.2433 -9.2954 -0.7229 19 7 -4.0030 -10.3561 -0.9489 20 6 -4.7838 -10.5725 0.1134 21 6 -4.5193 -9.6299 1.0429 22 7 -3.5464 -8.8152 0.5264 23 6 -2.9098 -7.7206 1.0204 24 6 -0.1055 -2.7571 0.0022 25 1 -0.4850 0.8400 -0.0004 26 1 2.5628 -4.0322 0.6547 27 1 1.8323 -4.2349 -0.9981 28 1 0.3597 -4.0639 1.7295 29 1 -0.1068 -5.5869 -0.7885 30 1 -0.8710 -7.0566 -1.5997 31 1 -2.0189 -9.0221 -2.4897 32 1 -5.5059 -11.3695 0.2123 33 1 -4.9869 -9.5358 2.0118 34 1 -3.1590 -7.3547 2.0055 35 1 -0.5316 -2.8718 -0.9944 36 1 -0.7182 -2.1404 0.6598 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031237982.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:57 Heat of formation + Delta-G solvation = 120.317749 kcal Electronic energy + Delta-G solvation = -21200.180143 eV Core-core repulsion = 17881.042827 eV Total energy + Delta-G solvation = -3319.137316 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.117 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.08772 -39.92500 -37.92484 -36.90267 -34.23964 -33.48954 -31.93538 -30.65885 -29.04008 -27.55234 -24.92696 -24.83975 -23.41362 -22.89191 -22.01855 -20.68988 -19.76127 -18.38340 -17.28451 -16.86708 -16.70202 -16.22234 -15.98149 -15.05545 -15.01225 -14.82235 -14.54186 -14.11513 -13.93909 -13.81908 -13.31966 -12.78734 -12.09157 -12.02472 -11.93937 -11.53744 -11.51477 -11.35160 -10.94672 -10.83710 -10.52710 -10.43732 -10.13967 -9.87408 -9.60478 -9.17995 -8.86580 -8.59091 -8.17915 -6.98692 -5.82769 -3.17172 0.30660 0.79180 2.17562 2.35331 2.94404 3.27283 3.36966 3.41721 3.43587 3.47930 3.90494 4.24604 4.35715 4.42493 4.57412 4.62647 4.99851 5.02555 5.11921 5.17109 5.41410 5.47918 5.53540 5.64475 5.74378 5.92591 6.08395 6.12362 6.29465 6.30988 6.46152 6.60749 6.67435 7.16323 7.25669 7.48026 7.53801 7.67955 7.90505 8.29056 8.97121 9.63620 10.48707 11.33879 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.047646 B = 0.002891 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.527656 B = 9681.584904 C = 9845.265284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.915 3.085 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.227 4.227 8 H 0.082 0.918 9 N -0.606 5.606 10 C 0.113 3.887 11 C 0.091 3.909 12 N -0.704 5.704 13 C 0.566 3.434 14 O -0.539 6.539 15 C -0.154 4.154 16 C -0.077 4.077 17 C -0.084 4.084 18 C 0.231 3.769 19 N -0.494 5.494 20 C 0.032 3.968 21 C -0.096 4.096 22 N -0.367 5.367 23 C 0.129 3.871 24 C 0.154 3.846 25 H 0.255 0.745 26 H 0.051 0.949 27 H 0.036 0.964 28 H 0.113 0.887 29 H 0.397 0.603 30 H 0.148 0.852 31 H 0.157 0.843 32 H 0.183 0.817 33 H 0.186 0.814 34 H 0.180 0.820 35 H 0.030 0.970 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.445 -19.431 -0.496 20.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.745 3.255 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.354 4.354 8 H 0.100 0.900 9 N -0.333 5.333 10 C -0.014 4.014 11 C -0.014 4.014 12 N -0.354 5.354 13 C 0.352 3.648 14 O -0.417 6.417 15 C -0.160 4.160 16 C -0.101 4.101 17 C -0.104 4.104 18 C -0.013 4.013 19 N -0.214 5.214 20 C -0.118 4.118 21 C -0.225 4.225 22 N -0.039 5.039 23 C 0.004 3.996 24 C 0.028 3.972 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.131 0.869 29 H 0.232 0.768 30 H 0.166 0.834 31 H 0.174 0.826 32 H 0.200 0.800 33 H 0.203 0.797 34 H 0.197 0.803 35 H 0.048 0.952 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.645 -19.252 -0.341 20.370 hybrid contribution 0.417 1.220 0.162 1.299 sum -6.228 -18.033 -0.179 19.079 Atomic orbital electron populations 1.69821 1.05062 1.25584 1.55984 1.24828 0.95711 0.97698 1.02041 0.86083 0.78632 0.83203 0.77594 1.21536 1.21543 1.20515 1.18977 0.90264 0.81543 1.44645 0.89983 1.45710 1.02364 0.99163 1.86074 1.22872 0.94495 0.86906 0.97118 1.24028 0.93442 0.83782 1.00105 1.46031 1.39065 1.30614 1.19657 1.17656 0.79956 0.82119 0.85118 1.90813 1.64465 1.66674 1.19751 1.19534 1.00749 0.99537 0.96202 1.21136 0.99329 0.95556 0.94076 1.20167 0.94444 0.95486 1.00304 1.21181 1.00365 0.94736 0.85040 1.70750 1.09437 1.14365 1.26846 1.22558 1.00119 0.99580 0.89556 1.22800 0.98995 0.97077 1.03644 1.42846 1.26354 1.19665 1.15037 1.21738 0.92215 0.85628 1.00032 1.22721 0.88241 0.88957 0.97310 0.93473 0.93069 0.94626 0.86877 0.76766 0.83429 0.82551 0.80021 0.79717 0.80322 0.95235 0.90376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.03 11.39 55.49 0.63 -26.40 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 3 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.23 -6.24 10.70 -15.06 -0.16 -6.40 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 N -0.61 -15.09 3.70 -177.89 -0.66 -15.75 16 10 C 0.11 2.13 8.69 -2.97 -0.03 2.11 16 11 C 0.09 1.67 4.40 -70.15 -0.31 1.36 16 12 N -0.70 -9.92 5.32 -56.38 -0.30 -10.22 16 13 C 0.57 8.24 7.76 -12.45 -0.10 8.15 16 14 O -0.54 -9.79 15.90 5.28 0.08 -9.71 16 15 C -0.15 -1.77 5.84 -105.37 -0.61 -2.38 16 16 C -0.08 -0.71 9.53 -39.17 -0.37 -1.08 16 17 C -0.08 -0.80 10.09 -39.40 -0.40 -1.20 16 18 C 0.23 2.74 7.81 -155.93 -1.22 1.52 16 19 N -0.49 -6.16 11.31 -12.72 -0.14 -6.31 16 20 C 0.03 0.31 11.82 -17.94 -0.21 0.10 16 21 C -0.10 -0.86 11.75 -16.39 -0.19 -1.06 16 22 N -0.37 -4.03 2.93 -62.31 -0.18 -4.21 16 23 C 0.13 1.42 10.49 -16.37 -0.17 1.25 16 24 C 0.15 3.55 7.32 -2.85 -0.02 3.53 16 25 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.04 0.61 8.11 -51.93 -0.42 0.19 16 28 H 0.11 2.25 7.50 -51.93 -0.39 1.86 16 29 H 0.40 4.34 6.75 -40.82 -0.28 4.06 16 30 H 0.15 0.97 6.44 -52.49 -0.34 0.63 16 31 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.19 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.18 1.78 7.56 -52.48 -0.40 1.39 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 2.06 7.17 -51.93 -0.37 1.69 16 LS Contribution 313.26 15.07 4.72 4.72 Total: -1.00 -34.63 313.26 -8.61 -43.25 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -3.85 Total: 2.19 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: -3.89 Total: 5.63 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: -0.65 Total: -62.89 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.08 Total: -9.71 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.63 -8.61 -43.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031237982.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.564 kcal (2) G-P(sol) polarization free energy of solvation -34.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds