Wall clock time and date at job start Tue Mar 31 2020 05:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38226 * 120.01049 * 264.99468 * 10 9 7 12 12 C 1.38221 * 120.09209 * 179.97438 * 11 10 9 13 13 C 1.38296 * 120.12628 * 0.02562 * 12 11 10 14 14 C 1.38298 * 120.03104 * 0.04315 * 13 12 11 15 15 F 1.35101 * 120.04735 * 179.97438 * 14 13 12 16 16 C 1.38610 * 120.01660 * 84.72835 * 10 9 7 17 17 O 1.35960 * 120.06440 * 359.97438 * 16 10 9 18 18 C 1.42899 * 117.00115 * 90.00073 * 17 16 10 19 19 C 1.50695 * 109.46887 * 179.97438 * 18 17 16 20 20 C 1.38233 * 120.00444 * 269.72833 * 19 18 17 21 21 C 1.38228 * 120.00260 * 179.77119 * 20 19 18 22 22 C 1.38241 * 119.99951 * 0.48065 * 21 20 19 23 23 C 1.38238 * 120.00049 * 359.79250 * 22 21 20 24 24 C 1.38233 * 119.99587 * 359.95877 * 23 22 21 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.07998 * 119.95456 * 0.02562 * 11 10 9 29 29 H 1.07998 * 119.93620 * 180.02562 * 12 11 10 30 30 H 1.08001 * 119.98721 * 180.02562 * 13 12 11 31 31 H 1.09001 * 109.46793 * 300.00466 * 18 17 16 32 32 H 1.08999 * 109.46754 * 60.00033 * 18 17 16 33 33 H 1.08003 * 119.99700 * 359.97438 * 20 19 18 34 34 H 1.07998 * 120.00210 * 180.25021 * 21 20 19 35 35 H 1.08003 * 120.00055 * 179.77250 * 22 21 20 36 36 H 1.07993 * 119.99900 * 179.97438 * 23 22 21 37 37 H 1.07997 * 119.99671 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6002 -4.2327 -1.2053 12 6 3.4987 -5.2830 -1.2119 13 6 4.0300 -5.7494 -0.0234 14 6 3.6623 -5.1659 1.1753 15 9 4.1807 -5.6216 2.3367 16 6 2.7645 -4.1054 1.1828 17 8 2.4064 -3.5245 2.3587 18 6 1.2716 -4.0713 3.0334 19 6 1.0280 -3.3055 4.3082 20 6 1.6275 -3.7137 5.4850 21 6 1.4078 -3.0085 6.6534 22 6 0.5808 -1.9008 6.6471 23 6 -0.0232 -1.4959 5.4714 24 6 0.2006 -2.1981 4.3020 25 1 -0.4850 0.8401 -0.0004 26 1 0.6242 -2.5609 0.8844 27 1 0.6244 -2.5529 -0.8956 28 1 2.1873 -3.8704 -2.1352 29 1 3.7863 -5.7403 -2.1471 30 1 4.7321 -6.5700 -0.0312 31 1 0.3950 -3.9950 2.3900 32 1 1.4591 -5.1188 3.2693 33 1 2.2701 -4.5818 5.4909 34 1 1.8794 -3.3251 7.5720 35 1 0.4062 -1.3520 7.5608 36 1 -0.6696 -0.6308 5.4666 37 1 -0.2710 -1.8815 3.3834 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250057504.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:16 Heat of formation + Delta-G solvation = -40.647055 kcal Electronic energy + Delta-G solvation = -21938.439241 eV Core-core repulsion = 18560.109255 eV Total energy + Delta-G solvation = -3378.329986 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.45834 -39.52804 -38.74021 -36.72747 -33.42876 -31.93788 -31.12405 -30.64409 -29.20470 -27.18924 -25.81834 -23.47381 -22.32564 -21.97534 -21.05474 -20.74478 -17.47364 -16.74492 -16.59023 -16.34886 -16.16252 -15.44994 -15.01099 -14.93027 -14.56410 -14.49628 -13.80891 -13.66467 -13.15272 -12.89731 -12.63396 -12.52706 -12.44267 -12.09988 -11.65549 -11.51895 -11.28198 -11.11562 -10.80039 -10.73876 -10.68835 -10.44465 -9.78840 -9.50594 -9.27265 -8.71135 -8.65540 -8.41412 -8.11069 -7.97303 -6.04959 -4.06485 1.33884 1.65547 1.67066 1.74762 3.33659 3.36745 3.41784 3.73830 4.08636 4.39704 4.47850 4.69250 5.04999 5.08516 5.17674 5.24137 5.30511 5.36865 5.46694 5.53459 5.65902 5.68098 5.82491 5.83747 5.91167 6.16437 6.20875 6.31997 6.46596 6.58671 6.65397 6.74666 6.75852 6.89139 6.90905 7.18478 7.23342 7.45937 7.64869 7.90415 8.05339 8.28756 8.95296 9.56132 11.05243 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.009436 B = 0.008120 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.715012 B = 3447.435986 C = 5822.116557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.501 4.501 8 H 0.056 0.944 9 C 0.054 3.946 10 C -0.026 4.026 11 C -0.125 4.125 12 C -0.099 4.099 13 C -0.173 4.173 14 C 0.073 3.927 15 F -0.143 7.143 16 C 0.058 3.942 17 O -0.303 6.303 18 C 0.107 3.893 19 C -0.084 4.084 20 C -0.099 4.099 21 C -0.132 4.132 22 C -0.118 4.118 23 C -0.125 4.125 24 C -0.082 4.082 25 H 0.262 0.738 26 H 0.034 0.966 27 H 0.031 0.969 28 H 0.130 0.870 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.491 -9.447 6.464 11.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.539 4.539 8 H 0.074 0.926 9 C 0.018 3.982 10 C -0.027 4.027 11 C -0.143 4.143 12 C -0.117 4.117 13 C -0.192 4.192 14 C 0.053 3.947 15 F -0.122 7.122 16 C 0.013 3.987 17 O -0.220 6.220 18 C 0.033 3.967 19 C -0.085 4.085 20 C -0.118 4.118 21 C -0.150 4.150 22 C -0.136 4.136 23 C -0.143 4.143 24 C -0.100 4.100 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.148 0.852 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.434 -9.192 6.609 11.411 hybrid contribution 0.612 0.763 0.126 0.986 sum 2.045 -8.429 6.735 10.981 Atomic orbital electron populations 1.69932 1.05891 1.26839 1.50787 1.24918 0.94870 0.99017 0.95165 0.86628 0.79623 0.82877 0.78802 1.20217 1.21249 1.20093 1.20879 0.92925 0.89422 1.50658 0.92620 1.18308 0.92275 0.89121 0.98507 1.21026 0.95796 0.95218 0.90648 1.21120 0.98682 0.96296 0.98183 1.20943 0.96828 0.96922 0.97004 1.20814 1.04257 1.02987 0.91142 1.18189 0.98921 0.95703 0.81845 1.91429 1.85388 1.88145 1.47195 1.18547 0.98685 0.94308 0.87125 1.86243 1.46883 1.56461 1.32396 1.21489 0.89308 0.95040 0.90901 1.19554 0.98217 0.97070 0.93615 1.21041 0.98429 0.99928 0.92357 1.21039 0.99634 0.96412 0.97894 1.21146 0.97506 0.96941 0.98025 1.21166 1.00449 0.99935 0.92710 1.21309 0.96720 0.93286 0.98710 0.92865 0.94796 0.95073 0.85204 0.85616 0.85417 0.91567 0.92955 0.86212 0.86318 0.86397 0.85972 0.84820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.65 13.29 55.43 0.74 -24.92 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.50 -13.90 9.09 -34.44 -0.31 -14.22 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.05 1.36 4.82 -29.03 -0.14 1.22 16 10 C -0.03 -0.56 5.08 -104.49 -0.53 -1.09 16 11 C -0.12 -2.24 9.68 -39.59 -0.38 -2.63 16 12 C -0.10 -1.49 10.04 -39.57 -0.40 -1.89 16 13 C -0.17 -2.70 10.02 -39.54 -0.40 -3.10 16 14 C 0.07 1.35 7.31 -39.30 -0.29 1.06 16 15 F -0.14 -2.61 17.11 2.25 0.04 -2.57 16 16 C 0.06 1.21 5.70 -39.18 -0.22 0.99 16 17 O -0.30 -6.58 9.18 -19.61 -0.18 -6.76 16 18 C 0.11 1.93 5.85 36.00 0.21 2.14 16 19 C -0.08 -1.46 5.51 -104.62 -0.58 -2.04 16 20 C -0.10 -1.51 9.70 -39.59 -0.38 -1.89 16 21 C -0.13 -1.77 10.05 -39.58 -0.40 -2.17 16 22 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 23 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 24 C -0.08 -1.44 9.70 -39.58 -0.38 -1.83 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.03 0.88 6.43 -51.93 -0.33 0.55 16 27 H 0.03 0.80 8.05 -51.93 -0.42 0.38 16 28 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 29 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.07 1.20 7.11 -51.93 -0.37 0.83 16 32 H 0.05 0.84 8.08 -51.93 -0.42 0.42 16 33 H 0.12 1.63 8.06 -52.48 -0.42 1.20 16 34 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 36 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.13 2.53 8.06 -52.49 -0.42 2.11 16 LS Contribution 328.74 15.07 4.95 4.95 Total: -1.00 -30.33 328.74 -9.03 -39.36 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -4.46 Total: 1.30 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: -5.10 Total: -28.07 kcal Atomic # 7 Polarization: -25.65 SS G_CDS: 0.74 Total: -24.92 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.18 Total: -6.76 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.04 Total: -2.57 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.33 -9.03 -39.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057504.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.290 kcal (2) G-P(sol) polarization free energy of solvation -30.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds