Wall clock time and date at job start Tue Mar 31 2020 05:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38226 * 120.01049 * 264.99468 * 10 9 7 12 12 C 1.38221 * 120.09209 * 179.97438 * 11 10 9 13 13 C 1.38296 * 120.12628 * 0.02562 * 12 11 10 14 14 C 1.38298 * 120.03104 * 0.04315 * 13 12 11 15 15 F 1.35101 * 120.04735 * 179.97438 * 14 13 12 16 16 C 1.38610 * 120.01660 * 84.72835 * 10 9 7 17 17 O 1.35960 * 120.06440 * 359.97438 * 16 10 9 18 18 C 1.42899 * 117.00115 * 90.00073 * 17 16 10 19 19 C 1.50695 * 109.46887 * 179.97438 * 18 17 16 20 20 C 1.38233 * 120.00444 * 269.72833 * 19 18 17 21 21 C 1.38228 * 120.00260 * 179.77119 * 20 19 18 22 22 C 1.38241 * 119.99951 * 0.48065 * 21 20 19 23 23 C 1.38238 * 120.00049 * 359.79250 * 22 21 20 24 24 C 1.38233 * 119.99587 * 359.95877 * 23 22 21 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.07998 * 119.95456 * 0.02562 * 11 10 9 29 29 H 1.07998 * 119.93620 * 180.02562 * 12 11 10 30 30 H 1.08001 * 119.98721 * 180.02562 * 13 12 11 31 31 H 1.09001 * 109.46793 * 300.00466 * 18 17 16 32 32 H 1.08999 * 109.46754 * 60.00033 * 18 17 16 33 33 H 1.08003 * 119.99700 * 359.97438 * 20 19 18 34 34 H 1.07998 * 120.00210 * 180.25021 * 21 20 19 35 35 H 1.08003 * 120.00055 * 179.77250 * 22 21 20 36 36 H 1.07993 * 119.99900 * 179.97438 * 23 22 21 37 37 H 1.07997 * 119.99671 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6002 -4.2327 -1.2053 12 6 3.4987 -5.2830 -1.2119 13 6 4.0300 -5.7494 -0.0234 14 6 3.6623 -5.1659 1.1753 15 9 4.1807 -5.6216 2.3367 16 6 2.7645 -4.1054 1.1828 17 8 2.4064 -3.5245 2.3587 18 6 1.2716 -4.0713 3.0334 19 6 1.0280 -3.3055 4.3082 20 6 1.6275 -3.7137 5.4850 21 6 1.4078 -3.0085 6.6534 22 6 0.5808 -1.9008 6.6471 23 6 -0.0232 -1.4959 5.4714 24 6 0.2006 -2.1981 4.3020 25 1 -0.4850 0.8401 -0.0004 26 1 0.6242 -2.5609 0.8844 27 1 0.6244 -2.5529 -0.8956 28 1 2.1873 -3.8704 -2.1352 29 1 3.7863 -5.7403 -2.1471 30 1 4.7321 -6.5700 -0.0312 31 1 0.3950 -3.9950 2.3900 32 1 1.4591 -5.1188 3.2693 33 1 2.2701 -4.5818 5.4909 34 1 1.8794 -3.3251 7.5720 35 1 0.4062 -1.3520 7.5608 36 1 -0.6696 -0.6308 5.4666 37 1 -0.2710 -1.8815 3.3834 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250057504.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:15 Heat of formation + Delta-G solvation = -55.437111 kcal Electronic energy + Delta-G solvation = -21939.080586 eV Core-core repulsion = 18560.109255 eV Total energy + Delta-G solvation = -3378.971331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.87392 -40.96839 -40.00547 -38.16626 -35.43344 -33.25943 -32.85221 -31.83366 -30.60008 -28.99249 -27.21269 -25.37113 -23.53316 -23.37410 -22.38435 -22.27806 -18.96498 -18.52169 -18.04139 -17.89580 -17.67378 -16.82416 -16.52176 -16.30655 -16.22489 -15.84515 -15.13780 -15.05812 -14.56081 -14.33680 -14.29441 -14.10838 -13.81254 -13.45697 -13.29886 -13.20251 -12.85549 -12.69728 -12.55925 -12.41387 -12.00517 -11.94092 -11.59184 -11.54219 -10.84007 -10.57953 -9.94682 -9.86279 -9.56962 -9.43488 -8.20275 -6.29754 0.00806 0.27717 0.42004 0.46040 1.35872 1.38784 1.46255 2.35747 2.44051 2.75488 3.06240 3.11541 3.28633 3.78172 3.82207 3.92515 4.08134 4.12068 4.21957 4.25192 4.30755 4.37651 4.43894 4.60621 4.71026 4.73178 5.00886 5.04936 5.11125 5.14380 5.19433 5.32719 5.43925 5.50035 5.56147 5.65632 5.72860 5.79327 5.86192 6.06219 6.15793 6.56948 6.77790 7.36202 8.89152 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.009436 B = 0.008120 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.715012 B = 3447.435986 C = 5822.116557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.013 3.987 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.517 4.517 8 H 0.044 0.956 9 C 0.067 3.933 10 C -0.062 4.062 11 C -0.128 4.128 12 C -0.079 4.079 13 C -0.151 4.151 14 C 0.061 3.939 15 F -0.143 7.143 16 C 0.036 3.964 17 O -0.333 6.333 18 C 0.110 3.890 19 C -0.108 4.108 20 C -0.106 4.106 21 C -0.123 4.123 22 C -0.111 4.111 23 C -0.132 4.132 24 C -0.113 4.113 25 H 0.264 0.736 26 H 0.006 0.994 27 H 0.012 0.988 28 H 0.137 0.863 29 H 0.176 0.824 30 H 0.170 0.830 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.135 0.865 34 H 0.158 0.842 35 H 0.156 0.844 36 H 0.135 0.865 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.650 -10.553 7.221 13.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.555 4.555 8 H 0.063 0.937 9 C 0.030 3.970 10 C -0.063 4.063 11 C -0.146 4.146 12 C -0.097 4.097 13 C -0.170 4.170 14 C 0.041 3.959 15 F -0.122 7.122 16 C -0.008 4.008 17 O -0.250 6.250 18 C 0.036 3.964 19 C -0.108 4.108 20 C -0.124 4.124 21 C -0.141 4.141 22 C -0.128 4.128 23 C -0.150 4.150 24 C -0.131 4.131 25 H 0.073 0.927 26 H 0.024 0.976 27 H 0.030 0.970 28 H 0.155 0.845 29 H 0.194 0.806 30 H 0.188 0.812 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.153 0.847 34 H 0.175 0.825 35 H 0.174 0.826 36 H 0.153 0.847 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.591 -10.308 7.358 13.164 hybrid contribution -0.056 1.027 -0.083 1.032 sum 3.535 -9.280 7.275 12.310 Atomic orbital electron populations 1.70042 1.07193 1.27720 1.51385 1.25722 0.95727 1.02374 0.94764 0.85674 0.78565 0.79006 0.78897 1.18974 1.20196 1.20344 1.21137 0.92542 0.91150 1.50638 0.93736 1.17957 0.92557 0.90332 0.96114 1.20772 0.97069 0.95746 0.92698 1.21308 0.99275 0.97015 0.97042 1.21401 0.94414 0.94936 0.98927 1.21324 1.03272 1.02683 0.89713 1.18325 0.98925 0.95599 0.83017 1.91421 1.85272 1.87996 1.47502 1.18776 0.99874 0.95600 0.86581 1.86172 1.47842 1.57967 1.33045 1.21530 0.87794 0.96108 0.90928 1.19637 0.99428 0.97551 0.94186 1.21280 0.98293 1.00692 0.92093 1.21509 0.98613 0.95492 0.98486 1.21578 0.96068 0.96790 0.98398 1.21393 1.00922 1.00106 0.92613 1.21204 0.98361 0.94909 0.98672 0.92675 0.97578 0.96987 0.84525 0.80637 0.81230 0.93560 0.91157 0.84695 0.82458 0.82603 0.84686 0.88318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.45 13.29 21.45 0.28 -55.16 16 2 C 0.01 0.73 5.46 84.66 0.46 1.19 16 3 Si 0.95 45.61 29.54 68.60 2.03 47.63 16 4 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 7 C -0.52 -30.21 9.09 25.60 0.23 -29.98 16 8 H 0.04 2.63 7.74 -2.91 -0.02 2.61 16 9 C 0.07 3.61 4.82 29.10 0.14 3.75 16 10 C -0.06 -2.77 5.08 -19.78 -0.10 -2.88 16 11 C -0.13 -4.54 9.68 22.26 0.22 -4.33 16 12 C -0.08 -2.10 10.04 22.28 0.22 -1.88 16 13 C -0.15 -4.17 10.02 22.30 0.22 -3.95 16 14 C 0.06 2.19 7.31 22.45 0.16 2.35 16 15 F -0.14 -5.05 17.11 44.97 0.77 -4.28 16 16 C 0.04 1.55 5.70 22.53 0.13 1.68 16 17 O -0.33 -15.37 9.18 -93.09 -0.85 -16.22 16 18 C 0.11 4.32 5.85 71.23 0.42 4.74 16 19 C -0.11 -3.96 5.51 -19.87 -0.11 -4.07 16 20 C -0.11 -3.14 9.70 22.27 0.22 -2.92 16 21 C -0.12 -3.00 10.05 22.27 0.22 -2.77 16 22 C -0.11 -2.72 10.05 22.27 0.22 -2.50 16 23 C -0.13 -4.07 10.05 22.27 0.22 -3.85 16 24 C -0.11 -4.31 9.70 22.27 0.22 -4.09 16 25 H 0.26 14.98 8.31 -92.70 -0.77 14.21 16 26 H 0.01 0.35 6.43 -2.38 -0.02 0.34 16 27 H 0.01 0.66 8.05 -2.39 -0.02 0.64 16 28 H 0.14 4.54 8.06 -2.91 -0.02 4.52 16 29 H 0.18 2.98 8.06 -2.91 -0.02 2.96 16 30 H 0.17 3.31 8.06 -2.91 -0.02 3.28 16 31 H 0.05 1.92 7.11 -2.39 -0.02 1.90 16 32 H 0.07 2.39 8.08 -2.39 -0.02 2.37 16 33 H 0.14 3.51 8.06 -2.91 -0.02 3.48 16 34 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 35 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 36 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 37 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -70.46 328.74 6.40 -64.06 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 1.07 Total: 13.47 kcal Atomic # 6 Polarization: -52.60 SS G_CDS: 3.10 Total: -49.50 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: 0.28 Total: -55.16 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.85 Total: -16.22 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 0.77 Total: -4.28 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -70.46 6.40 -64.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057504.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.626 kcal (2) G-P(sol) polarization free energy of solvation -70.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds