Wall clock time and date at job start Tue Mar 31 2020 05:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37958 * 120.07354 * 2 1 4 4 C 1.38368 * 120.14265 * 180.25198 * 3 2 1 5 5 C 1.50703 * 119.85424 * 179.77083 * 4 3 2 6 6 O 1.42909 * 109.46886 * 270.02326 * 5 4 3 7 7 C 1.38404 * 120.29014 * 359.79260 * 4 3 2 8 8 C 1.37919 * 120.14264 * 359.97438 * 7 4 3 9 9 C 1.39571 * 120.07365 * 179.79540 * 2 1 3 10 10 C 1.48005 * 120.13959 * 359.97438 * 9 2 1 11 11 C 1.40014 * 119.86242 * 129.73026 * 10 9 2 12 12 C 1.36195 * 120.18895 * 179.97438 * 11 10 9 13 13 C 1.40939 * 119.89690 * 0.02635 * 12 11 10 14 14 C 1.40958 * 120.13244 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99475 * 154.30595 * 14 13 12 16 16 C 1.40004 * 120.00219 * 334.30521 * 14 13 12 17 17 N 1.30819 * 119.99552 * 343.27787 * 16 14 13 18 18 Si 1.86792 * 120.00263 * 163.28295 * 16 14 13 19 19 H 1.48506 * 109.47107 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47174 * 119.99481 * 18 16 14 21 21 H 1.48496 * 109.47390 * 239.99976 * 18 16 14 22 22 C 1.41165 * 119.73234 * 359.97438 * 13 12 11 23 23 F 1.35097 * 120.09728 * 179.97438 * 22 13 12 24 24 C 1.36580 * 119.80836 * 359.97438 * 22 13 12 25 25 H 1.08991 * 109.46843 * 270.20847 * 1 2 3 26 26 H 1.09005 * 109.46943 * 30.20876 * 1 2 3 27 27 H 1.09006 * 109.46989 * 150.20403 * 1 2 3 28 28 H 1.08000 * 119.92820 * 0.02562 * 3 2 1 29 29 H 1.08996 * 109.47009 * 30.01862 * 5 4 3 30 30 H 1.08995 * 109.47211 * 150.02504 * 5 4 3 31 31 H 0.96702 * 113.99345 * 180.02562 * 6 5 4 32 32 H 1.08000 * 119.92553 * 179.97438 * 7 4 3 33 33 H 1.08001 * 120.07061 * 179.97438 * 8 7 4 34 34 H 1.08009 * 119.90613 * 359.71424 * 11 10 9 35 35 H 1.07996 * 120.04931 * 179.97438 * 12 11 10 36 36 H 0.97000 * 119.99628 * 179.97438 * 17 16 14 37 37 H 1.07997 * 119.94946 * 179.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1939 0.0000 4 6 3.5820 1.1955 -0.0053 5 6 4.3306 2.5035 -0.0105 6 8 4.5616 2.9147 -1.3595 7 6 4.2815 0.0013 -0.0062 8 6 3.6025 -1.1991 -0.0014 9 6 2.2064 -1.2078 0.0043 10 6 1.4712 -2.4923 0.0095 11 6 1.7981 -3.4864 -0.9207 12 6 1.1261 -4.6711 -0.9216 13 6 0.0985 -4.8966 0.0162 14 6 -0.6005 -6.1206 0.0194 15 1 -1.0655 -6.4745 0.9278 16 6 -0.6920 -6.8776 -1.1548 17 7 -0.4291 -6.3253 -2.3111 18 14 -1.1898 -8.6760 -1.0703 19 1 -1.4308 -9.0570 0.3447 20 1 -2.4317 -8.8834 -1.8576 21 1 -0.1021 -9.5175 -1.6305 22 6 -0.2279 -3.8916 0.9523 23 9 -1.2120 -4.0997 1.8542 24 6 0.4541 -2.7083 0.9436 25 1 -0.3633 0.0037 1.0276 26 1 -0.3633 0.8882 -0.5171 27 1 -0.3633 -0.8919 -0.5107 28 1 1.6584 2.1292 0.0004 29 1 3.7408 3.2617 0.5045 30 1 5.2856 2.3776 0.4996 31 1 5.0405 3.7511 -1.4391 32 1 5.3615 0.0095 -0.0108 33 1 4.1495 -2.1303 -0.0026 34 1 2.5825 -3.3117 -1.6423 35 1 1.3799 -5.4362 -1.6403 36 1 -0.4921 -6.8498 -3.1246 37 1 0.2059 -1.9377 1.6584 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244580708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:52 Heat of formation + Delta-G solvation = -69.600212 kcal Electronic energy + Delta-G solvation = -21369.373062 eV Core-core repulsion = 17989.787573 eV Total energy + Delta-G solvation = -3379.585489 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -47.29065 -39.39621 -37.48878 -36.47607 -34.12690 -32.57104 -31.53640 -29.44745 -29.20914 -26.69981 -26.48038 -24.28963 -21.95155 -21.42295 -20.58652 -19.68784 -17.54989 -17.49619 -16.50548 -15.65138 -15.42150 -15.12801 -14.66965 -14.39751 -14.11036 -14.08540 -13.76405 -13.38795 -13.19208 -12.70528 -12.66599 -12.46577 -12.03113 -11.82907 -11.66790 -11.52634 -11.35257 -11.17376 -10.86610 -10.79069 -10.62140 -10.40500 -10.12571 -9.91086 -9.63233 -9.37554 -8.47415 -8.26112 -7.57153 -7.32127 -6.97342 -4.52930 1.51159 1.79945 2.56336 2.80327 2.97771 3.02525 3.05150 3.78445 3.98077 4.40425 4.56948 4.98030 5.05770 5.28235 5.32023 5.37933 5.43923 5.48260 5.69330 5.87576 5.95832 5.96489 6.07481 6.19411 6.26351 6.32305 6.48545 6.62672 6.77978 6.83207 6.87039 6.94081 7.04404 7.15036 7.34916 7.42367 7.52387 7.58232 7.84840 7.89375 7.97030 8.39039 8.55730 8.70593 9.92977 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.031182 B = 0.003716 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.729924 B = 7532.443695 C = 7981.908236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.093 4.093 3 C -0.097 4.097 4 C -0.121 4.121 5 C 0.123 3.877 6 O -0.568 6.568 7 C -0.103 4.103 8 C -0.124 4.124 9 C 0.018 3.982 10 C -0.180 4.180 11 C -0.081 4.081 12 C -0.153 4.153 13 C 0.094 3.906 14 C -0.442 4.442 15 H 0.086 0.914 16 C 0.074 3.926 17 N -0.778 5.778 18 Si 0.915 3.085 19 H -0.257 1.257 20 H -0.271 1.271 21 H -0.269 1.269 22 C -0.033 4.033 23 F -0.164 7.164 24 C -0.092 4.092 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.114 0.886 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.374 0.626 32 H 0.114 0.886 33 H 0.122 0.878 34 H 0.096 0.904 35 H 0.126 0.874 36 H 0.286 0.714 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.512 10.482 1.932 12.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.094 4.094 3 C -0.115 4.115 4 C -0.121 4.121 5 C 0.046 3.954 6 O -0.373 6.373 7 C -0.121 4.121 8 C -0.142 4.142 9 C 0.018 3.982 10 C -0.181 4.181 11 C -0.099 4.099 12 C -0.173 4.173 13 C 0.090 3.910 14 C -0.470 4.470 15 H 0.104 0.896 16 C -0.146 4.146 17 N -0.401 5.401 18 Si 0.738 3.262 19 H -0.181 1.181 20 H -0.197 1.197 21 H -0.194 1.194 22 C -0.053 4.053 23 F -0.143 7.143 24 C -0.111 4.111 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.132 0.868 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.220 0.780 32 H 0.132 0.868 33 H 0.140 0.860 34 H 0.114 0.886 35 H 0.144 0.856 36 H 0.097 0.903 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.134 9.853 1.583 11.714 hybrid contribution -0.057 -0.237 0.185 0.306 sum 6.077 9.616 1.768 11.512 Atomic orbital electron populations 1.20839 0.91275 1.02824 1.01875 1.20020 0.96097 0.92170 1.01066 1.20716 0.93147 0.97221 1.00463 1.19418 0.93576 0.93633 1.05502 1.20931 0.97688 0.93480 0.83290 1.86632 1.80040 1.43803 1.26827 1.20820 0.99058 0.91946 1.00282 1.21263 0.93731 0.97539 1.01706 1.18872 0.92331 0.92354 0.94682 1.17739 1.03099 0.94329 1.02981 1.20507 0.98869 0.93496 0.97063 1.20829 0.96783 0.97398 1.02247 1.17712 0.91423 0.91550 0.90293 1.19648 1.28122 1.02446 0.96743 0.89606 1.26010 0.93057 1.00958 0.94568 1.69810 1.33772 1.37598 0.98969 0.86136 0.78961 0.81020 0.80042 1.18090 1.19657 1.19387 1.17435 0.94222 0.96290 0.97349 1.91280 1.60957 1.95651 1.66424 1.20271 0.96220 0.95591 0.99060 0.91728 0.92612 0.90229 0.86787 0.93279 0.93241 0.77980 0.86783 0.86031 0.88630 0.85640 0.90329 0.87942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.82 8.45 36.01 0.30 -1.51 16 2 C -0.09 -1.63 5.87 -104.23 -0.61 -2.24 16 3 C -0.10 -1.51 9.34 -39.64 -0.37 -1.88 16 4 C -0.12 -1.79 5.52 -104.51 -0.58 -2.37 16 5 C 0.12 1.39 7.16 36.01 0.26 1.65 16 6 O -0.57 -6.67 13.64 -35.23 -0.48 -7.15 16 7 C -0.10 -1.57 9.68 -39.64 -0.38 -1.95 16 8 C -0.12 -2.14 9.51 -39.19 -0.37 -2.51 16 9 C 0.02 0.34 5.46 -104.89 -0.57 -0.24 16 10 C -0.18 -3.87 4.74 -104.65 -0.50 -4.37 16 11 C -0.08 -1.81 9.43 -39.65 -0.37 -2.18 16 12 C -0.15 -3.78 8.62 -39.29 -0.34 -4.12 16 13 C 0.09 2.44 5.57 -106.73 -0.59 1.84 16 14 C -0.44 -11.46 8.75 -37.89 -0.33 -11.80 16 15 H 0.09 2.21 7.74 -52.48 -0.41 1.80 16 16 C 0.07 1.78 5.15 -17.32 -0.09 1.69 16 17 N -0.78 -19.06 10.95 55.55 0.61 -18.45 16 18 Si 0.91 17.90 29.59 -169.99 -5.03 12.87 16 19 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 20 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 21 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 22 C -0.03 -0.82 7.26 -39.07 -0.28 -1.10 16 23 F -0.16 -4.08 16.71 2.25 0.04 -4.04 16 24 C -0.09 -2.06 7.81 -39.61 -0.31 -2.37 16 25 H 0.06 0.99 7.50 -51.93 -0.39 0.60 16 26 H 0.05 0.78 8.09 -51.93 -0.42 0.36 16 27 H 0.08 1.48 6.47 -51.93 -0.34 1.14 16 28 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 29 H 0.05 0.47 8.08 -51.93 -0.42 0.05 16 30 H 0.05 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.37 2.31 9.12 45.56 0.42 2.73 16 32 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.12 1.98 8.04 -52.49 -0.42 1.55 16 34 H 0.10 1.96 8.04 -52.48 -0.42 1.54 16 35 H 0.13 3.15 6.19 -52.49 -0.32 2.83 16 36 H 0.29 6.28 8.30 -40.82 -0.34 5.95 16 37 H 0.10 2.10 6.86 -52.49 -0.36 1.74 16 LS Contribution 319.16 15.07 4.81 4.81 Total: -1.00 -28.47 319.16 -8.68 -37.15 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -3.48 Total: 8.27 kcal Atomic # 6 Polarization: -28.32 SS G_CDS: -5.14 Total: -33.46 kcal Atomic # 7 Polarization: -19.06 SS G_CDS: 0.61 Total: -18.45 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.48 Total: -7.15 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.04 Total: -4.04 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.47 -8.68 -37.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244580708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.446 kcal (2) G-P(sol) polarization free energy of solvation -28.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds